View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_2 (Length: 652)
Name: NF8300_low_2
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 224 - 635
Target Start/End: Original strand, 35484739 - 35485148
Alignment:
| Q |
224 |
agttatagatggtgggtggggttggagagcataatgagcgagctggaatccgacttgtataaggtgatacctacgactcaatattatttattataccggt |
323 |
Q |
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| T |
35484739 |
agttatagatggtgggtggggttggagagcataatgagcgagctggaatccgacttgtataaggtgatacctccgactcaatattat----tataccggt |
35484834 |
T |
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| Q |
324 |
tcaaagcccccatggccagccctcaacaattctgatgactgatgagcccccaaaacaaggtgagccccgagattttggtttgcacatgcgagatatagct |
423 |
Q |
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| T |
35484835 |
tcaaagcccctaaggccagccctcaataattctgatgactgacgagcccccaaaacaaggtgagccccgagattttggtttgcacatgcgagttatagct |
35484934 |
T |
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| Q |
424 |
ttatttgtatttgtttctctcacgtataga--nnnnnnnactattttgagtcgacgtgatttctgcaaccatgctccaattatctcgtgtcagtttgaag |
521 |
Q |
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| T |
35484935 |
ttagttgtatttgtttctctcacgtatagatttttttttagtattttgaggtgacgtgatttctacaatcatgctccaattatctcgtgtcaatttgaag |
35485034 |
T |
|
| Q |
522 |
ctcccaagcatgagacttgaaagggcgaattcacgccttttagccaacatttgcttttcggtttctgattgacggttagatgttatcgtatctcgtttaa |
621 |
Q |
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| T |
35485035 |
ctcccaagcatgagatttgaaagggcgaattcacaccttttagccaacatttgcttttcggtttctgattgacggctagatgttatcgtatctcgtttaa |
35485134 |
T |
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| Q |
622 |
gcacgtgttttctt |
635 |
Q |
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| T |
35485135 |
gcacgtgctttctt |
35485148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 35484035 - 35484156
Alignment:
| Q |
115 |
taaacagtaaagaccatgcatgcctgcggtgtacctgatgagtgatggtgatttctgaatgtttcctctt-----------ccctctttttatagagatg |
203 |
Q |
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| T |
35484035 |
taaacagtaaagaccatgc----cttcggtgtacgtgatgagtgatggtgatttctgaatctttcctcttgtgaatgcctcccctcattttatagagatg |
35484130 |
T |
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| Q |
204 |
gttttcaaaatattgtcgggagttat |
229 |
Q |
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| T |
35484131 |
gttttcaaaatattgtcgggagttat |
35484156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 35483586 - 35483641
Alignment:
| Q |
16 |
tgcaacacaaaatttcatgtttcaaggtgaaaggtttagagaattaagaactttac |
71 |
Q |
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| T |
35483586 |
tgcaacacaaaatttcatgtttcaaggtgaaaggtttagagaactaagaaccttac |
35483641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 35483717 - 35483762
Alignment:
| Q |
71 |
cggtgtaatattttgtgttgggtgtattaaaaattgtagcgggtta |
116 |
Q |
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| T |
35483717 |
cggtgtaatattttgtgttgggtgtattaaaaattgtagcgagtta |
35483762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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