View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8300_low_22 (Length: 262)

Name: NF8300_low_22
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8300_low_22
NF8300_low_22
[»] chr2 (5 HSPs)
chr2 (95-257)||(34608714-34608876)
chr2 (16-96)||(34608922-34609002)
chr2 (134-188)||(25770411-25770465)
chr2 (133-188)||(25780906-25780961)
chr2 (135-188)||(41101147-41101200)
[»] chr1 (2 HSPs)
chr1 (135-197)||(5270141-5270203)
chr1 (133-169)||(731936-731972)
[»] chr6 (2 HSPs)
chr6 (135-188)||(24359197-24359250)
chr6 (134-188)||(2038317-2038371)
[»] chr7 (4 HSPs)
chr7 (135-207)||(1295565-1295637)
chr7 (149-197)||(16984337-16984385)
chr7 (153-188)||(37333601-37333636)
chr7 (136-182)||(28065608-28065654)
[»] chr4 (7 HSPs)
chr4 (134-207)||(14043947-14044020)
chr4 (135-188)||(17115921-17115974)
chr4 (135-197)||(49159063-49159125)
chr4 (135-188)||(542286-542338)
chr4 (143-180)||(23125491-23125528)
chr4 (135-207)||(4787072-4787144)
chr4 (136-188)||(18862402-18862454)
[»] chr5 (3 HSPs)
chr5 (135-183)||(19747406-19747454)
chr5 (133-183)||(40294644-40294694)
chr5 (135-188)||(22858539-22858592)
[»] chr3 (1 HSPs)
chr3 (134-182)||(44894196-44894244)
[»] chr8 (2 HSPs)
chr8 (142-188)||(32158712-32158758)
chr8 (135-188)||(15892036-15892089)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 95 - 257
Target Start/End: Complemental strand, 34608876 - 34608714
Alignment:
Q  95 tgcttatgggcccaaggggacaaaattgaccattaaatatgaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaactatcc 194  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||    
T  34608876 tgctcatgggcccaaggggacaaaattgaccattaaatatgaattttgctctttacccaacacattttgcttattcccaactgaaattccaaaaatatcc 34608777  T
Q  195 ctgcacgagttaattacttggacgttgaagcatttgcaggtacacaacccccttcatctcact 257  Q
    |||  ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  34608776 ctgtgcgagttaattacttggacgttgaagcatttgcaggtatacaatccccttcgtctcact 34608714  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 34609002 - 34608922
Alignment:
Q  16 tctccaatgctatgctgaaccattgttgttgttttctatttgccctaacaaagaaagaaacataatctagggttttaagtg 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34609002 tctccaatgctatgctgaaccattgttgttgttttctatttgccctaacaaagaaagaaacataatctagggttttaagtg 34608922  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 25770465 - 25770411
Alignment:
Q  134 tgaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25770465 tgaattctgctctttacccaacacattttgctcattttcaactgaaattctaaaa 25770411  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 25780961 - 25780906
Alignment:
Q  133 atgaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  25780961 atgaattgtgctatttacccaacacattttgctcatttccaactgaaatttcaaaa 25780906  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 41101147 - 41101200
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||| |||| ||||||||||||||||||||| ||| ||| |||||||| ||||    
T  41101147 gaattatgctatttacccaacacattttgctcgtttccaattgaaattctaaaa 41101200  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 5270203 - 5270141
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaactatccctg 197  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || |||||    
T  5270203 gaattttgctctttacccaacacattttgttcatttccaactgaaattccaaaaatacccctg 5270141  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 731936 - 731972
Alignment:
Q  133 atgaattttgctctttacccaacacattttgctcatt 169  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  731936 atgaattttgctctttactcaaaacattttgctcatt 731972  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 24359250 - 24359197
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  24359250 gaattctgctctttacccaacacatttttctcattttcaactgaaattccaaaa 24359197  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 2038317 - 2038371
Alignment:
Q  134 tgaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    |||||| ||||||||||| |||| ||||| || ||| ||||||||||||||||||    
T  2038317 tgaattctgctctttaccaaacatattttactaattctcaactgaaattccaaaa 2038371  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 1295637 - 1295565
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaactatccctgcacgagttaa 207  Q
    ||||| |||||||||||||||||||||||||||||   |||||||||| ||||| || ||||||| |||||||    
T  1295637 gaattctgctctttacccaacacattttgctcattcctaactgaaatttcaaaaatacccctgcatgagttaa 1295565  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 16984337 - 16984385
Alignment:
Q  149 acccaacacattttgctcattttcaactgaaattccaaaactatccctg 197  Q
    |||||||||||||||||||||  ||||| ||||||||||| ||||||||    
T  16984337 acccaacacattttgctcattcccaactaaaattccaaaattatccctg 16984385  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 37333601 - 37333636
Alignment:
Q  153 aacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37333601 aacacattttgctcattttcaactgaaattcaaaaa 37333636  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 28065608 - 28065654
Alignment:
Q  136 aattttgctctttacccaacacattttgctcattttcaactgaaatt 182  Q
    |||| |||||||||||||||||||||| ||||||||  |||||||||    
T  28065608 aattctgctctttacccaacacattttactcattttttactgaaatt 28065654  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 14043947 - 14044020
Alignment:
Q  134 tgaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaactatccctgcacgagttaa 207  Q
    |||||| ||||||||||| |||||||||||||||||  ||||||||||||| ||| | ||||| || |||||||    
T  14043947 tgaattctgctctttaccaaacacattttgctcattcccaactgaaattcctaaaatgtccctacatgagttaa 14044020  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 17115974 - 17115921
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  17115974 gaattctgctctttacctaacacattttgctcattctcaactgaaattcaaaaa 17115921  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 49159063 - 49159125
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaactatccctg 197  Q
    ||||| |||||||||||||||||||||||||||||   |||| ||||||||||| || |||||    
T  49159063 gaattctgctctttacccaacacattttgctcattccaaactaaaattccaaaaatacccctg 49159125  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 542286 - 542338
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||||||||| |||||||||| ||||||||| || ||||||||||||||||||    
T  542286 gaattttgctcattacccaacatattttgctc-ttctcaactgaaattccaaaa 542338  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 23125528 - 23125491
Alignment:
Q  143 ctctttacccaacacattttgctcattttcaactgaaa 180  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  23125528 ctctttacccaacacattttactcattctcaactgaaa 23125491  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 4787072 - 4787144
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaactatccctgcacgagttaa 207  Q
    ||||| ||||||||||| |||| |||||||||||| |||| || |||| ||||| ||  |||||| |||||||    
T  4787072 gaattctgctctttaccgaacatattttgctcattctcaagtgcaatttcaaaaatactcctgcatgagttaa 4787144  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 18862454 - 18862402
Alignment:
Q  136 aattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    |||| ||||||| ||| |||||||||||||||||  ||||||||||| |||||    
T  18862454 aattctgctcttaacctaacacattttgctcattcccaactgaaatttcaaaa 18862402  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 19747406 - 19747454
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattc 183  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||||||||    
T  19747406 gaattatgctctttacccgacatattttgctcattttcaactgaaattc 19747454  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 40294694 - 40294644
Alignment:
Q  133 atgaattttgctctttacccaacacattttgctcattttcaactgaaattc 183  Q
    |||||||||||||||||||||||  |||||| || ||||||||||||||||    
T  40294694 atgaattttgctctttacccaactgattttgttcgttttcaactgaaattc 40294644  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 22858592 - 22858539
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||| ||||||||||||||||| ||||| |||||  |||||||||| ||||||    
T  22858592 gaattatgctctttacccaacacgttttgttcattcccaactgaaatcccaaaa 22858539  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 44894244 - 44894196
Alignment:
Q  134 tgaattttgctctttacccaacacattttgctcattttcaactgaaatt 182  Q
    ||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  44894244 tgaattttgctctttatacaacacattttgctcattttcaattgaaatt 44894196  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 32158758 - 32158712
Alignment:
Q  142 gctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||    
T  32158758 gctctttacccaacacattttgctcattgccaaccgaaattccaaaa 32158712  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 15892036 - 15892089
Alignment:
Q  135 gaattttgctctttacccaacacattttgctcattttcaactgaaattccaaaa 188  Q
    ||||| || ||||||||||||||||| ||||||||  |||||||||||||||||    
T  15892036 gaattatgttctttacccaacacattatgctcattcccaactgaaattccaaaa 15892089  T

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