View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_23 (Length: 250)
Name: NF8300_low_23
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 36524465 - 36524685
Alignment:
| Q |
16 |
tgaaaagggaatcggagaaagttagagaagaagttgaaaaggagagagaaatgcttcagttagctgacattttgcgcgaagaacgagtccatatgaagct |
115 |
Q |
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| T |
36524465 |
tgaaaagggaatcggagaaagttcgagaagaagttgaaaaggagagagaaatgcttcagttagccgacattttgcgcgaagaacgagtccatatgaagct |
36524564 |
T |
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| Q |
116 |
ctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattctaagaaatgagcttgagaactttataagaaata---aagaagagaaaggt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36524565 |
ctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattctaagaaatgagcttgagaactttataagaaataaagaagaagagaaaggt |
36524664 |
T |
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| Q |
213 |
gatgatattgatgttaatcca |
233 |
Q |
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| T |
36524665 |
gatgatattgatgttaatcca |
36524685 |
T |
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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 18971212 - 18971032
Alignment:
| Q |
15 |
atgaaaagggaatcggagaaagttagagaagaagttgaaaaggagagagaaatgcttcagttagctgacattttgcgcgaagaacgagtccatatgaagc |
114 |
Q |
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||||||| ||| |||| |||||| | ||||| || ||||||||||| ||||||||||||||||| || |||||||||| || ||||||| ||||||| |
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| T |
18971212 |
atgaaaaaggagtcggttaaagttcgtgaagaggtggaaaaggagagggaaatgcttcagttagcggatgttttgcgcgaggagagagtccagatgaagc |
18971113 |
T |
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| Q |
115 |
tctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattctaagaaatgagcttgagaactttataagaa |
195 |
Q |
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| T |
18971112 |
tttcagaggccaagtatcaattcgaagagaaaaatgattttgtagaaaagctaagaaatgagcttgaagactttatgagaa |
18971032 |
T |
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