View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8300_low_24 (Length: 241)

Name: NF8300_low_24
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8300_low_24
NF8300_low_24
[»] chr8 (2 HSPs)
chr8 (1-224)||(5618359-5618582)
chr8 (34-224)||(32009619-32009813)
[»] chr3 (5 HSPs)
chr3 (1-224)||(22819317-22819540)
chr3 (34-222)||(22807823-22808010)
chr3 (161-224)||(26778473-26778536)
chr3 (161-224)||(26776183-26776246)
chr3 (161-224)||(26780489-26780552)
[»] chr5 (1 HSPs)
chr5 (113-212)||(17081589-17081688)
[»] chr2 (2 HSPs)
chr2 (88-174)||(28969420-28969506)
chr2 (9-171)||(29024291-29024450)
[»] chr7 (1 HSPs)
chr7 (122-175)||(25270916-25270969)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5618359 - 5618582
Alignment:
Q  1 ggagacaatttttctcataggaaaactcaaagtaattaacctcaccatgttgacatgttggtggaatatcattaggaacatatccaacaacatgagctta 100  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  5618359 ggagacaatttttttcataggaaaactctaagtaattaacctcaccatgttgacatgttggtggaatatcattacgaacatattcaacaacatgagctta 5618458  T
Q  101 ttcaacaataagtttcataggaggataaaatttagaataactaatcgttcgaccaatcatatccttaagattaattctaaatcaacccaaacccataaaa 200  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  5618459 ttcaacaataaatttcataggaggataaaatttaggataactaatcgttcgaccaatcatatccttaagattaattctaagtcaacccaaatccataaaa 5618558  T
Q  201 gttatcgtgacccaagcacctaaa 224  Q
    ||||||||||||||||||||||||    
T  5618559 gttatcgtgacccaagcacctaaa 5618582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 32009813 - 32009619
Alignment:
Q  34 aattaacctcaccatgttgacatgttggtggaatatcattaggaacatatccaacaacatgagcttattcaacaataagtttcataggaggataaaattt 133  Q
    |||||||||||||||||||| |||  ||||||||| ||||||  | ||  |||||||||  ||  | |||||||| || ||||||| || ||| ||||||    
T  32009813 aattaacctcaccatgttgatatgacggtggaataccattagacatatgaccaacaacaccaggcttttcaacaacaaatttcataagatgatcaaattt 32009714  T
Q  134 agaataactaatcgttcgaccaatca----tatccttaagattaattctaaatcaacccaaacccataaaagttatcgtgacccaagcacctaaa 224  Q
    || ||||||||  ||| |||||| ||    ||||||||| |||||||||||||| ||||||| ||| |||||| ||| |||| ||||||||||||    
T  32009713 aggataactaaatgtttgaccaaccaaccttatccttaatattaattctaaatcgacccaaaaccacaaaagtcatcatgactcaagcacctaaa 32009619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22819540 - 22819317
Alignment:
Q  1 ggagacaatttttctcataggaaaactcaaagtaattaacctcaccatgttgacatgttggtggaatatcattaggaacatatccaacaacatgagctta 100  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22819540 ggagacaatttttttcataggaaaactctaagtaattaacctcaccatgttgacatgttggtggaatatcattacgaacatattcaacaacatgagctta 22819441  T
Q  101 ttcaacaataagtttcataggaggataaaatttagaataactaatcgttcgaccaatcatatccttaagattaattctaaatcaacccaaacccataaaa 200  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  22819440 ttcaacaataaatttcataggaggataaaatttaggataactaatcgttcgaccaatcatatccttaagattaattctaagtcaacccaaatccataaaa 22819341  T
Q  201 gttatcgtgacccaagcacctaaa 224  Q
    ||||||||||||||||||||||||    
T  22819340 gttatcgtgacccaagcacctaaa 22819317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 22808010 - 22807823
Alignment:
Q  34 aattaacctcaccatgttgacatgttggtggaatatcattaggaacatatccaacaacatgagcttattcaacaataagtttcataggaggataaaattt 133  Q
    |||||||||||||||||| | ||||||||||||||  ||||| ||||| ||||||||||| ||||| |||||||| || |||||||||||||| ||||||    
T  22808010 aattaacctcaccatgtt-atatgttggtggaatactattagaaacatgtccaacaacatcagctttttcaacaacaaatttcataggaggatcaaattt 22807912  T
Q  134 agaataactaatcgttcgaccaatcatatccttaagattaattctaaatcaacccaaacccataaaagttatcgtgacccaagcaccta 222  Q
    || |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||| || | |||||||||||||||||    
T  22807911 aggataactaatcattcgatcaaccatatccttaagattaattctaaatcaacccaaactcataaaggtcaacgtgacccaagcaccta 22807823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 26778473 - 26778536
Alignment:
Q  161 atccttaagattaattctaaatcaacccaaacccataaaagttatcgtgacccaagcacctaaa 224  Q
    |||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||    
T  26778473 atccttaagattaattctaaatcaacccaaacccactaaagtcatcatgacccaagcacctaaa 26778536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 26776183 - 26776246
Alignment:
Q  161 atccttaagattaattctaaatcaacccaaacccataaaagttatcgtgacccaagcacctaaa 224  Q
    |||||||||||||||| ||||||||||||||||||  ||||| ||| |||||||||||||||||    
T  26776183 atccttaagattaattgtaaatcaacccaaacccactaaagtcatcatgacccaagcacctaaa 26776246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 26780489 - 26780552
Alignment:
Q  161 atccttaagattaattctaaatcaacccaaacccataaaagttatcgtgacccaagcacctaaa 224  Q
    |||||||||||||||||||||||||||||||||||  ||||| ||| ||||||| |||||||||    
T  26780489 atccttaagattaattctaaatcaacccaaacccactaaagtcatcatgacccatgcacctaaa 26780552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 17081688 - 17081589
Alignment:
Q  113 tttcataggaggataaaatttagaataactaatcgttcgaccaatcatatccttaagattaattctaaatcaacccaaacccataaaagttatcgtgacc 212  Q
    |||||||||| ||| |||||||| ||||||||||||||||| || | ||| ||| |||||||||||||||| | |||||| || |||||| |||||||||    
T  17081688 tttcataggaagatcaaatttaggataactaatcgttcgacaaaccctattcttgagattaattctaaatcgatccaaactcacaaaagtcatcgtgacc 17081589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 28969506 - 28969420
Alignment:
Q  88 caacatgagcttattcaacaataagtttcataggaggataaaatttagaataactaatcgttcgaccaatcatatccttaagattaa 174  Q
    |||||| || || ||||| || || |||| |||||| || |||||||| |||| | ||||||||||||| | |||||||||||||||    
T  28969506 caacatcagttttttcaataacaaatttcttaggagtattaaatttaggataaattatcgttcgaccaaccctatccttaagattaa 28969420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 29024450 - 29024291
Alignment:
Q  9 tttttctcataggaaaactcaaagtaattaacctcaccatgttgacatgttggtggaatatcattaggaacatatccaacaacatgagcttattcaacaa 108  Q
    ||||||||||||||||| | |||   |||||  |||||||||||| |||  |||||||||  |||| | |||||  ||||||||| | ||  ||||||||    
T  29024450 tttttctcataggaaaattaaaa---attaatgtcaccatgttgatatggcggtggaatacgattaagcacatagtcaacaacatcaactatttcaacaa 29024354  T
Q  109 taagtttcataggaggataaaatttagaataactaatcgttcgaccaatcatatccttaagat 171  Q
      | ||| ||||||| || |||||||| |||  |||| ||||||| || | ||||||||||||    
T  29024353 cgaattttataggagtattaaatttaggatagttaattgttcgactaaccctatccttaagat 29024291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 25270969 - 25270916
Alignment:
Q  122 aggataaaatttagaataactaatcgttcgaccaatcatatccttaagattaat 175  Q
    ||||| |||||||| |||| ||||| ||| ||||| ||||||||||||||||||    
T  25270969 aggatcaaatttaggataaataatcattcaaccaaccatatccttaagattaat 25270916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University