View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_28 (Length: 228)
Name: NF8300_low_28
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 36679477 - 36679613
Alignment:
| Q |
2 |
catgtctaaattacattgtacatcaatacagtgtgcacaagaatatctattctagaaaataccaatcttcacaaacccaaaatttgacttccaatgttaa |
101 |
Q |
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| T |
36679477 |
catgtctaaattacattgtacatcaatacagtgtgcacaagaatatctattctagaaaatatcaatcttcacaaacccaaaatttgacttccaatgttaa |
36679576 |
T |
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| Q |
102 |
ataactactaactaaagtgactgaagtcacatctata |
138 |
Q |
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| T |
36679577 |
ataactactaactaaagtgactgaagtcacatctata |
36679613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 36679786 - 36679879
Alignment:
| Q |
135 |
tatattttaagactagaactgaaaataagagtgaatatggaaaaaagaattgatagtactaaccaggagtgtgaaaagaaaggagctcagggat |
228 |
Q |
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| T |
36679786 |
tatattttaagactggaactgaaaataagagtgaatatggaaaaaacaattgatagtactaaccaggagtgtgaaaagaaaggagctcagggat |
36679879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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