View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_30 (Length: 204)
Name: NF8300_low_30
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_30 |
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| [»] scaffold0051 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 26617504 - 26617610
Alignment:
| Q |
21 |
agcatgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgata |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26617504 |
agcatgtacctaggctaatgtaagttcatgtatcagaaaattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgata |
26617603 |
T |
|
| Q |
121 |
tgtaagc |
127 |
Q |
| |
|
||||||| |
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|
| T |
26617604 |
tgtaagc |
26617610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 26723432 - 26723538
Alignment:
| Q |
21 |
agcatgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgata |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26723432 |
agcatgtacctaggctaatgtaagttcatgtatcagaaaattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgata |
26723531 |
T |
|
| Q |
121 |
tgtaagc |
127 |
Q |
| |
|
||||||| |
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|
| T |
26723532 |
tgtaagc |
26723538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 22930 - 22827
Alignment:
| Q |
23 |
catgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgatatg |
122 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22930 |
catgtacctaggctaatgtaagttcatgtatcagataattaatgttttctagagagctctatcactcactataaatgagagttctccaccatctgatatg |
22831 |
T |
|
| Q |
123 |
taag |
126 |
Q |
| |
|
|||| |
|
|
| T |
22830 |
taag |
22827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 38883 - 38778
Alignment:
| Q |
21 |
agcatgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgata |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38883 |
agcatgtaactaggctaatgtaagttcatgtatcagataattaatgttttctagagagctctatcactcgctataaatgagagttctccaccatctgata |
38784 |
T |
|
| Q |
121 |
tgtaag |
126 |
Q |
| |
|
|||||| |
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|
| T |
38783 |
tgtaag |
38778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 34506 - 34443
Alignment:
| Q |
21 |
agcatgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctat |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
34506 |
agcatgtacctaggctaatgtaagttcatgtatcagataattaatgttttctagagagctctat |
34443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 16418368 - 16418262
Alignment:
| Q |
21 |
agcatgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgata |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
16418368 |
agcatgtacctaggctaatgtaagttcatgtatcagataattaatgatttctagagagctctatcactcactataaatgagagttctccatcatctgata |
16418269 |
T |
|
| Q |
121 |
tgtaagc |
127 |
Q |
| |
|
||||||| |
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|
| T |
16418268 |
tgtaagc |
16418262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 553085 - 552987
Alignment:
| Q |
21 |
agcatgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
553085 |
agcatgtacctaggctaatgtaagttcatgtatgagataattaatgctttctagagagctctatcagtcattataaatgagagttctccaccatctgat |
552987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 49006214 - 49006261
Alignment:
| Q |
148 |
ctgtttctaacctcactcctcacggtcgtgtttctttcttcttcttct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49006214 |
ctgtttctaacctcactcctcacggtcgtgtttctttcttcttcttct |
49006261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 17536442 - 17536336
Alignment:
| Q |
21 |
agcatgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgata |
120 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
17536442 |
agcatgtacctaggttaatgcaagttcatgtatcagataattaatgctttctagagagctctatcactcattataaatgagagttctccaccatctgata |
17536343 |
T |
|
| Q |
121 |
tgtaagc |
127 |
Q |
| |
|
||||||| |
|
|
| T |
17536342 |
tgtaagc |
17536336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 17532016 - 17531914
Alignment:
| Q |
25 |
tgtacctaggctaatgtaagttcatgcatcagataattaatgctttctagagagctctatcactcactataaatgagagttctccaccatctgatatgta |
124 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
17532016 |
tgtacctaggctaatgcaagttcatgtatcagataatttatgctttctagagagctctatcactcattataaatgagagttctccaccatctgatatgta |
17531917 |
T |
|
| Q |
125 |
agc |
127 |
Q |
| |
|
||| |
|
|
| T |
17531916 |
agc |
17531914 |
T |
|
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