View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8300_low_4 (Length: 532)

Name: NF8300_low_4
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8300_low_4
NF8300_low_4
[»] chr6 (5 HSPs)
chr6 (72-374)||(7325994-7326296)
chr6 (455-521)||(7326481-7326547)
chr6 (1-49)||(7325949-7325997)
chr6 (390-455)||(7326393-7326453)
chr6 (397-440)||(6922703-6922746)
[»] chr1 (1 HSPs)
chr1 (33-92)||(51791469-51791528)
[»] chr4 (5 HSPs)
chr4 (376-440)||(35130658-35130723)
chr4 (390-440)||(13538317-13538367)
chr4 (398-439)||(49479453-49479494)
chr4 (376-440)||(17882291-17882355)
chr4 (377-440)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (397-441)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (376-440)||(30746010-30746074)
chr7 (390-440)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (397-441)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (397-437)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (376-442)||(32594558-32594625)
chr3 (397-440)||(52093594-52093637)
chr3 (397-440)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (407-441)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 72 - 374
Target Start/End: Original strand, 7325994 - 7326296
Alignment:
Q  72 tattattcttgaatttaaggaagtgaaagaaactagttggttcgaatggtaagaaattagatcaccttaaattagtggtcatgagtccaattttttgact 171  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  7325994 tattattcttgtatttaaggaagtgaaaaaaactagttggttcgaatggtaagaaattagatcaccttaaattagtgatcatgagtccaattttttgagt 7326093  T
Q  172 ctcgcataaaagaaaaaactagttcggagggaaacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaag 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7326094 ctcgcataaaagaaaaaactagttcggagggaaacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaag 7326193  T
Q  272 caaaataaggcataatctaaaatgttgtttgctgcaaataagtgaaattagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattag 371  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7326194 caaaataaggcctaatctaaaatgttgtttgctgcaaataagtgaagttagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattgg 7326293  T
Q  372 cac 374  Q
    |||    
T  7326294 cac 7326296  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 455 - 521
Target Start/End: Original strand, 7326481 - 7326547
Alignment:
Q  455 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggatagttttatcccttcat 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7326481 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggataattttatcccttcat 7326547  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7325949 - 7325997
Alignment:
Q  1 ggtccaaattaattgtcgtaaaggaaaaataaataaacctatttgtatt 49  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7325949 ggtccaaattaattgtcgttaaggaaaaataaataaacctatttgtatt 7325997  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 7326393 - 7326453
Alignment:
Q  390 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttcttca 455  Q
    |||| |||||||||| |||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttcttca 7326453  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  397 caaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 51791469 - 51791528
Alignment:
Q  33 ataaacctatttgtatttccaagtttattataacaaagttattattcttgaatttaagga 92  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||||| | |||||||||    
T  51791469 ataaacctatttgtattttcaagtttatcataactaagttattattctaggatttaagga 51791528  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  376 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 440
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  390 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  398 aaattattcctgatagctaccaactgaactatacttacggga 439  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  376 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  377 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  397 caaattattcctgatagctaccaactgaactatacttacgggaca 441  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  376 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 440
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  390 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  397 caaattattcctgatagctaccaactgaactatacttacgggaca 441  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  397 caaattattcctgatagctaccaactgaactatacttacgg 437  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  376 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 442  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  397 caaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  397 caaattattcctgatagctaccaactgaactatacttacgggac 440  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 441
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  407 ctgatagctaccaactgaactatacttacgggaca 441  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

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