View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_5 (Length: 523)
Name: NF8300_low_5
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Original strand, 10880874 - 10881388
Alignment:
| Q |
8 |
tcgagtttggtgttggatggtagttccaatgatcatttcaatatgcatgatatggctcaagatgccgctttgtctatagcacacaaggagaaaaatgtat |
107 |
Q |
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| T |
10880874 |
tcgagtttgatgtcggatggtagttccagtgatcatttcaatatgcatgatatggctcaagatgccgctttgtctatagcacacaaggagaaaaatgtat |
10880973 |
T |
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| Q |
108 |
ttgctttgagaaatggcaaattagatgactggctggacaaagatatacttgggaggtgcactgttatctctatacgcaactgtgaaatcgttgacgagct |
207 |
Q |
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| T |
10880974 |
ttgctttgagaaatggcaaattagatgactggccggacaaagatatacttgggaggtgcactgttatctctatacgcaactgtgaaatcattgacgagct |
10881073 |
T |
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| Q |
208 |
tcctaaattcatacattgtcctcaacttaagttcttccaaatcgacaacgatgatccttctttgaaaatacctgagaacttttttgaaggaatggaaaaa |
307 |
Q |
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| T |
10881074 |
tcctaaattcatacattgtcctcaacttaaattcttccaaatcgacaacgatgatccttctttgaaaatacctgagaa-ttttttgaaggaatggaaaaa |
10881172 |
T |
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| Q |
308 |
ctcagagtattaatattgactggttttcatttatcatgcttaccatcttcgattaaatgcctattaaacctcagaatgctttgtttagagaggtgtgttc |
407 |
Q |
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| T |
10881173 |
ctcagagtattaatattgactggttttcatttatcatgcttaccatcttcgattaaatgcctattaaacctcagaatgctttgtttagagaggtgtgttc |
10881272 |
T |
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| Q |
408 |
tagttgacaacttatccatcgtaggaaagctgaaaaagttaagaattctcagcttttctggatctcaaattgaaaacttgccagctgagttagggtgttt |
507 |
Q |
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| T |
10881273 |
tagttgacaacttatccatcgtaggaaagctgaaaaagttaagaattctcagcttttctggatctcaaattgaaaacttgccagctgagttagggtgttt |
10881372 |
T |
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| Q |
508 |
agataagctacagtta |
523 |
Q |
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| T |
10881373 |
agataagctacagtta |
10881388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Original strand, 10849442 - 10849957
Alignment:
| Q |
8 |
tcgagtttggtgttggatggtagttccaatgatcatttcaatatgcatgatatggctcaagatgccgctttgtctatagcacacaaggagaaaaatgtat |
107 |
Q |
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| T |
10849442 |
tcgagtttgatgttggattgtagttccaatgatcatttcaatatgcatgatatggttcaagatgccgctttgtctatagcacacaaggagaaaaatgtat |
10849541 |
T |
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| Q |
108 |
ttgctttgagaaatggcaaattagatgactggctggacaaagatatacttgggaggtgcactgttatctctatacgcaactgtgaaatcgttgacgagct |
207 |
Q |
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| T |
10849542 |
ttgctttgagaaatggcaaattagatgactggccggacaaggatatactcgagaggtgtagtgctatctctatacgcaactgtgatatcattgacgagct |
10849641 |
T |
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| Q |
208 |
tcctaaattcatacattgtcctcaacttaagttcttccaaatcgacaacgatgatccttctttgaaaatacctgagaacttttttgaaggaatggaaaaa |
307 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
10849642 |
tcctaaagtcatacattgtcctcagcttaagttcttccaaattgacagcaatgatccttctttgaaaatacctgagaatttttttgtaggaatggaaaaa |
10849741 |
T |
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| Q |
308 |
ctcagagtattaatattgactggttttcatttatcatgcttaccatcttcgattaaatgcctattaaacctcagaatgctttgtttagagaggtgtgttc |
407 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| || |
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| T |
10849742 |
ctcagaatattaatattgactggttttcatttatcgtgcttaccatcttcgattaaattcctattaaacctcagaatgctttgtttggagcggtgtgctc |
10849841 |
T |
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| Q |
408 |
tagttgacaacttatccatcgtaggaaagctgaaaaagttaagaattctcagcttttctggatctcaaattgaaaacttgccagctgagttagggtgttt |
507 |
Q |
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| T |
10849842 |
taggtgaaaacttatccatcgtaggagagctgaaaaaattaagaattctcagcttttctggatctcaaattgaaaacttgccagctgagttagggttctt |
10849941 |
T |
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| Q |
508 |
agataagctacagtta |
523 |
Q |
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|||||||||||||||| |
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| T |
10849942 |
agataagctacagtta |
10849957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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