View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_6 (Length: 519)
Name: NF8300_low_6
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Original strand, 10881366 - 10881857
Alignment:
| Q |
10 |
ggtgtttagataagctacagttatttgacatcagcaactgcttcataacgaaggtggttccacctagttttatatcaagcctgacttgtttagaagagtt |
109 |
Q |
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| T |
10881366 |
ggtgtttagataagctacagttatttgacatcagcaactgtttcataacgaaggtggttccacctagttttatatcaagcctgacttgtttagaagagtt |
10881465 |
T |
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| Q |
110 |
gtatataagaaagagcttgatcaaagtggtggtagatggagaaccaaaccaaagtcaaattacatttctttctcagttaaaacatttacaccaattgagg |
209 |
Q |
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| T |
10881466 |
gtatataagaaagagcttgatcaaagtggtggtagatggagaaccaaaccaaagtcaaattacatttctttctcagttaaaacatttacaccaattgagg |
10881565 |
T |
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| Q |
210 |
gttgtagacttatgtatcccgagtgctgcagttttgcctagggacttgttctttgacaggttaactgattacaaaattgtgattggagacttcaagatgc |
309 |
Q |
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| T |
10881566 |
gttgtagacttatgtatcccgagtgctgcagttttgcctagggacttgttctttgacaggttaactgattacaaaattgtgattggagacttcaagatgc |
10881665 |
T |
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| Q |
310 |
tttcagttggagattttaggatgccaaataagtacaaagcattaagatctttggcattgcagctaatagacggcactgacattcactctcagaaagggat |
409 |
Q |
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| T |
10881666 |
tttcagttggagatttcaggatgccaaataagtacaaaacattaagatctttggcattgcagctaatagacggcactgacattcactctcagaaagggat |
10881765 |
T |
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| Q |
410 |
aaagttgttgtttaaaggagttgaaaatttgttgttgggagagctaaatggtgttcaaaatgttttttatgagttgaatttggatggatttc |
501 |
Q |
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| T |
10881766 |
aaagttgttgtttaaaggagttgaaaatttgttgttgggagagctaaatggtgttcaaaatgttttttatgagttgaatttggatggatttc |
10881857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 501
Target Start/End: Original strand, 10849940 - 10850423
Alignment:
| Q |
15 |
ttagataagctacagttatttgacatcagcaactgcttcataacgaaggtggttccacctagttttatatcaagcctgacttgtttagaagagttgtata |
114 |
Q |
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||||||||||||||||||||||||||||| |||| | ||||| ||||| |||| |||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
10849940 |
ttagataagctacagttatttgacatcagtgactgttccataatgaagggggtttcacctaattttatatcaaggttgacatgtttagaagagttgtata |
10850039 |
T |
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| Q |
115 |
taagaaagagcttgatcaaagtggtggtagatggagaaccaaaccaaagtcaaattacatttctttctcagttaaaacatttacaccaattgagggttgt |
214 |
Q |
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| T |
10850040 |
taagaaagagcttgatcaaagtggtggttgatggagagccaaaccaaagtcaaatttcatttctttctcagttaaaacatttacaccaattgagggttgt |
10850139 |
T |
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| Q |
215 |
agacttatgtatcccgagtgctgcagttttgcctagggacttgttctttgacaggttaactgattacaaaattgtgattggagacttcaagatgctttca |
314 |
Q |
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| T |
10850140 |
agacttatgaatcccgagtgctgcagttttgcctagggacttgttctttgacaggttaactgattacaaaattgtgattggagacttcaagatgctttca |
10850239 |
T |
|
| Q |
315 |
gttggagattttaggatgccaaataagtacaaagcattaagatctttggcattgcagctaatagacggcactgacattcactctcagaaagggataaagt |
414 |
Q |
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| T |
10850240 |
gttggagatttcaggatgccaaataagtacaaagcattaagatctttggcatt---gctaacagacggcactgacattcacgctcagaaagggataaagt |
10850336 |
T |
|
| Q |
415 |
tgttgtttaaaggagttgaaaatttgttgttgggagagctaaatggtgttcaaaatgttttttatgagttgaatttggatggatttc |
501 |
Q |
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| T |
10850337 |
tgttgtttaaaggagttgaaaatttgttgttgggagagctaaatggtgttcaaaatgttttttatgagttgaatttggatggatttc |
10850423 |
T |
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