View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_9 (Length: 464)
Name: NF8300_low_9
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 18278396 - 18277967
Alignment:
| Q |
18 |
caatggtttcactttctacaacagagccactgcactattcaccaaagcatacaaatctgaataaatgatccctctctatccatggatcgttctacttata |
117 |
Q |
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| T |
18278396 |
caatggtttcactttctagaacagagccactgcactattcaccaaagcatacaaatctgaataaatgatccctctctatccatggatcgttctacttata |
18278297 |
T |
|
| Q |
118 |
cacgttattcctctaacaattcttactattctaatcaccctttattctatattctaacagacacggtgaaaccatattacttactgtagagacaatgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18278296 |
cacgttattcctctaacaattcttactattctaatcaccctttattctatattctaacagacacggtgaaaccatattacttactgtagagacaatgatt |
18278197 |
T |
|
| Q |
218 |
aatcataataaaaattctctacccaaaaattcaaaagctcattcaagagtgaagaatcttaacattcagagatggccacatataagttccagtagaaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18278196 |
aatcataataaaaattctctacccaaaaattcaaaagctcattcaagagtgaagaatcttaacattcagacatggccacatataagttccagtagaaaaa |
18278097 |
T |
|
| Q |
318 |
taagaatacacnnnnnnntagcaattcctgtggattaccattattgcttttatgatgtcttccaattcgctcgcagtatctattttttgtcatgttgtag |
417 |
Q |
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| T |
18278096 |
taagaatacacaaaaaaatagcacttcctgtggattaccattattgcttttatgatgtcttccaattcgctcgcagtatctattttttgtcatgttgtag |
18277997 |
T |
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| Q |
418 |
accatgaatccagattcagagtataaatac |
447 |
Q |
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| T |
18277996 |
accatgaatccagattcagagtataaatac |
18277967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 18269501 - 18269384
Alignment:
| Q |
18 |
caatggtttcactttctacaacagagccactgcactattcaccaaagcatacaaatctgaataaatgatccctctctatccatgga-tcgttctacttat |
116 |
Q |
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|||||||||| | |||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||| ||||||||||||||| | ||| |||| |||| |
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| T |
18269501 |
caatggtttccccttctacaacagagccactgctctattcatcaaagtatataaatctgaataaatgaaccctctctatccatgtattcgatctatttat |
18269402 |
T |
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| Q |
117 |
acacgttattcctctaac |
134 |
Q |
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||| |||||||||||||| |
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| T |
18269401 |
acatgttattcctctaac |
18269384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 447
Target Start/End: Complemental strand, 18269217 - 18269007
Alignment:
| Q |
233 |
tctctacccaaaaattcaaaagctcattcaagagtgaagaatcttaacattcagagatggccacatataagttccagtagaaaaataagaatacacnnnn |
332 |
Q |
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| T |
18269217 |
tctctacccaaatattcaaaaactcattcaagagtggagaattataacattcagacgtcgcaaaaaaaaa--tccagtagaaaaataagaacatacaaaa |
18269120 |
T |
|
| Q |
333 |
nnntagcaattcctgtggattaccattattgcttttatgatgtcttccaattcgctcgcagtatctattttttgtcatgttgtagaccatgaatccagat |
432 |
Q |
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|| | |||| | ||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| ||||| |||||||||| | |||| || |
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| T |
18269119 |
aa--agtacttccgggagattaccattattgcttttatgaggtctgccaattcgctcgcaatatctattttttatcatgctgtagaccatcagtccaaat |
18269022 |
T |
|
| Q |
433 |
tcagagtataaatac |
447 |
Q |
| |
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|||||| |||||||| |
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| T |
18269021 |
tcagagaataaatac |
18269007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 18269337 - 18269284
Alignment:
| Q |
149 |
taatcaccctttattctatattctaacagacacggtgaaaccatattacttact |
202 |
Q |
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||||||||||||||||||||| || ||||||| ||||||| || |||||||||| |
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| T |
18269337 |
taatcaccctttattctatatcctgacagacaaggtgaaaacacattacttact |
18269284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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