View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8301_high_3 (Length: 425)
Name: NF8301_high_3
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8301_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 32626876 - 32627116
Alignment:
| Q |
10 |
tgttgggtttgaaagtaaatttctacaaaagttgtttgatgggggtgaatgtcacgtcggattttatggaaatggcgtgccaattattgaattgtagtga |
109 |
Q |
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| T |
32626876 |
tgttgggtttgaaagtaaatttctacaaaagttgtttgatgggggtgaatgttacgtcggattttatggaaatggcgtgccaattattgaattgtagtga |
32626975 |
T |
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| Q |
110 |
aggaaggttgcctttcaaatacttggggttgccggttggggcaaatccgagtagtgttgtaacatgggatcctctgttggagcaactctctaagaagttg |
209 |
Q |
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| T |
32626976 |
aggaaggttgcctttcaaatacttggggttgccggttggggcaaatccaagtagtgtcgtaacatgggatcctgtgttggagcaactctctaagaagttg |
32627075 |
T |
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| Q |
210 |
aactcatggggtagtagtacatgagtcttgggggaaaaatt |
250 |
Q |
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| T |
32627076 |
aactcatggggtagtagtacatgagtcttggaagaaaaatt |
32627116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 321 - 411
Target Start/End: Original strand, 32627103 - 32627193
Alignment:
| Q |
321 |
ttggaagaaaaattacttgaattcaaagggtgttcctttggggtggtgtgtggggtcgtatgaagattaattgggtgaagcggagaaaagt |
411 |
Q |
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| T |
32627103 |
ttggaagaaaaattacttgaattcaaagggtgttcctttggggtggtgtgtggggtcgtatgaagattaattgggtgaagcggagaaaagt |
32627193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 19111312 - 19111210
Alignment:
| Q |
120 |
cctttcaaatacttggggttgccggttggggcaaatccgagtagtgttgtaacatgggatcctctgttggagcaactctctaagaagttgaactcatggg |
219 |
Q |
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| T |
19111312 |
ccttttaagtacttggggttaccggtgggtgcaaatccgagaagggtggcaacttgggatcctcttttcgatcaattatctaggaggttgaactcgtggg |
19111213 |
T |
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| Q |
220 |
gta |
222 |
Q |
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| T |
19111212 |
gta |
19111210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 43075201 - 43075044
Alignment:
| Q |
39 |
agttgtttgatgggggtgaatgtcacgtcggattttatggaaatggcgtgccaattattgaattgtagtgaaggaaggttgcctttcaaatacttggggt |
138 |
Q |
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| T |
43075201 |
agttgtttgatgggaatcaatgtcaacccggattttatgaatatggcgtgcaatttcttgaattgtagtcaagggagtttccctttccgttatttggggt |
43075102 |
T |
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| Q |
139 |
tgccggttggggcaaatccgagtagtgttgtaacatgggatcctctgttggagcaact |
196 |
Q |
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| T |
43075101 |
tgccggtaggaggtaatccgggtagagttgtaactcgggatccgcttttggaacaact |
43075044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 4902765 - 4902826
Alignment:
| Q |
339 |
gaattcaaagggtgttcctttggggtggtgtgtggggtcgtatgaagattaattgggtgaag |
400 |
Q |
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| T |
4902765 |
gaattcaaagggagttcctttggggtggtgtggagggtggtaggggcattaattgggtgaag |
4902826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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