View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8301_low_10 (Length: 241)
Name: NF8301_low_10
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8301_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 47019952 - 47019742
Alignment:
| Q |
17 |
gtttaaatttttgtaatttcttgctttttgcacctccatgttgtctaatagtgttatagactcgataaaaacatcaaaacaacttataaaaacatgtaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47019952 |
gtttaaatttttgtaatttcttgctttttgcacctccatgttgtctaatagtgttacagactcgataaaaacatcaaaacaacttataaaaacatgtaat |
47019853 |
T |
|
| Q |
117 |
gacagcaagttatcagtcgtcatcattatgaacttctcgttcttcctttatagacattctttcttgaaagcctttcaacatttacttgtccttctccctg |
216 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47019852 |
gacggcaagttatcactcgtcatcattatgaacttctcgttcttcctttatagacattctttgttgaaagcctttcaacatttacttgtccttctccctg |
47019753 |
T |
|
| Q |
217 |
ttcatgttttt |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
47019752 |
ttcatgttttt |
47019742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 2089943 - 2089847
Alignment:
| Q |
24 |
tttttgtaatttcttgctttttgcacctccatgttgtctaatagtgttatagactcgataaaaacatcaaaacaacttataaaaacatgtaatgaca |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| || |||| | || ||||||||||||||| |||| |||||||| |||||||||| |
|
|
| T |
2089943 |
tttttgtaatttcttgctttttgcacctccaggctgtctaataatgatataaattcaataaaaacatcaaaataactaataaaaacttgtaatgaca |
2089847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 6602794 - 6602732
Alignment:
| Q |
38 |
tgctttttgcacctccatgttgtctaatagtgttatagactcgataaaaacatcaaaacaact |
100 |
Q |
| |
|
|||||||| |||| ||| ||||||||| | || || |||||| |||||||||||||||||||| |
|
|
| T |
6602794 |
tgctttttacacccccaggttgtctaaaattgctacagactcaataaaaacatcaaaacaact |
6602732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 31428276 - 31428338
Alignment:
| Q |
38 |
tgctttttgcacctccatgttgtctaatagtgttatagactcgataaaaacatcaaaacaact |
100 |
Q |
| |
|
||||||||||||| ||| | ||||||| | || ||||||||| |||||||||||||||||||| |
|
|
| T |
31428276 |
tgctttttgcacccccaggctgtctaaaattgctatagactcaataaaaacatcaaaacaact |
31428338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 11187362 - 11187299
Alignment:
| Q |
32 |
atttcttgctttttgcacctccatgttgtctaatagtgttatagactcgataaaaacatcaaaa |
95 |
Q |
| |
|
|||| ||||||||||||||| || | ||||||| | ||||| |||||| ||||||||||||||| |
|
|
| T |
11187362 |
attttttgctttttgcaccttcaggctgtctaaaattgttacagactcaataaaaacatcaaaa |
11187299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 18826661 - 18826723
Alignment:
| Q |
38 |
tgctttttgcacctccatgttgtctaatagtgttatagactcgataaaaacatcaaaacaact |
100 |
Q |
| |
|
|||||||| |||| ||| | ||||||| | || || ||||||||||||||||||||||||||| |
|
|
| T |
18826661 |
tgctttttacacccccaggctgtctaaaattgctacagactcgataaaaacatcaaaacaact |
18826723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 19302177 - 19302217
Alignment:
| Q |
24 |
tttttgtaatttcttgctttttgcacctccatgttgtctaa |
64 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
19302177 |
tttttgtactttcttgctttttgcacctccaagctgtctaa |
19302217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University