View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8301_low_12 (Length: 239)
Name: NF8301_low_12
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8301_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37914720 - 37914942
Alignment:
| Q |
1 |
tctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914720 |
tctttgacatttcttggttttactgcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcc |
37914819 |
T |
|
| Q |
101 |
tattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctccttacata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37914820 |
tattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcata |
37914919 |
T |
|
| Q |
201 |
cgttaccttgatcaagactctat |
223 |
Q |
| |
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|||||||||||| |||||||||| |
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| T |
37914920 |
cgttaccttgatgaagactctat |
37914942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 37 - 224
Target Start/End: Original strand, 37906593 - 37906780
Alignment:
| Q |
37 |
ttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaaca |
136 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906593 |
ttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaaca |
37906692 |
T |
|
| Q |
137 |
cttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctccttacatacgttaccttgatcaagactctatt |
224 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
37906693 |
cttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatt |
37906780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 37961472 - 37961289
Alignment:
| Q |
40 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
139 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37961472 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
37961373 |
T |
|
| Q |
140 |
ctttcccttcacctccaacctcatcatccctccaaattcccataacactcctccttacatacgttaccttgatcaagactctat |
223 |
Q |
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||| || || |||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||| |
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| T |
37961372 |
cttccctttttcctctaacctcatcgtccctccaaattcccaaaacaccgatccttacatacgttacctcgatgaagactctat |
37961289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 3782862 - 3782970
Alignment:
| Q |
37 |
ttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaaca |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||| |||||| | ||||| |||| |
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| T |
3782862 |
ttaaacgcatcttcttctaccactttcctcatccaactcatcactttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaaca |
3782961 |
T |
|
| Q |
137 |
cttctttcc |
145 |
Q |
| |
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||||||||| |
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| T |
3782962 |
cttctttcc |
3782970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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