View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8301_low_2 (Length: 581)

Name: NF8301_low_2
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8301_low_2
NF8301_low_2
[»] chr5 (10 HSPs)
chr5 (169-556)||(689648-690036)
chr5 (43-177)||(690051-690186)
chr5 (56-184)||(32090199-32090342)
chr5 (100-184)||(9507626-9507712)
chr5 (100-185)||(34854045-34854132)
chr5 (57-108)||(3627574-3627625)
chr5 (58-108)||(9503735-9503785)
chr5 (58-108)||(9507717-9507767)
chr5 (57-95)||(34854155-34854193)
chr5 (100-187)||(9503641-9503730)
[»] chr8 (8 HSPs)
chr8 (14-239)||(37186744-37186985)
chr8 (14-187)||(37786537-37786725)
chr8 (165-244)||(37786745-37786825)
chr8 (14-86)||(37791062-37791134)
chr8 (165-244)||(37791301-37791381)
chr8 (100-187)||(37791207-37791295)
chr8 (58-108)||(11096211-11096261)
chr8 (118-172)||(11096134-11096186)
[»] chr1 (1 HSPs)
chr1 (14-248)||(44541314-44541579)
[»] chr3 (9 HSPs)
chr3 (39-244)||(28920251-28920472)
chr3 (165-244)||(18641093-18641173)
chr3 (100-187)||(4315552-4315641)
chr3 (58-171)||(531527-531655)
chr3 (100-172)||(32813593-32813667)
chr3 (117-172)||(55418423-55418478)
chr3 (69-108)||(4315646-4315685)
chr3 (56-108)||(47743902-47743954)
chr3 (58-102)||(55418479-55418523)
[»] chr2 (13 HSPs)
chr2 (15-185)||(302372-302556)
chr2 (14-187)||(295734-295922)
chr2 (57-185)||(29960346-29960476)
chr2 (58-187)||(13273295-13273419)
chr2 (165-244)||(302270-302350)
chr2 (57-187)||(45485784-45485929)
chr2 (100-187)||(21794542-21794631)
chr2 (167-245)||(29960257-29960336)
chr2 (100-187)||(18163923-18164012)
chr2 (100-187)||(43081689-43081778)
chr2 (57-108)||(39190646-39190697)
chr2 (58-108)||(18164017-18164067)
chr2 (176-238)||(295654-295717)
[»] chr7 (6 HSPs)
chr7 (100-244)||(297006-297153)
chr7 (100-244)||(45937770-45937917)
chr7 (100-244)||(293112-293260)
chr7 (57-108)||(22582334-22582385)
chr7 (70-108)||(45937922-45937960)
chr7 (70-107)||(293266-293303)
[»] scaffold0038 (2 HSPs)
scaffold0038 (51-177)||(49381-49522)
scaffold0038 (162-244)||(49254-49337)
[»] chr6 (6 HSPs)
chr6 (51-177)||(28249219-28249360)
chr6 (100-187)||(31888483-31888572)
chr6 (162-244)||(28249092-28249175)
chr6 (100-172)||(7501421-7501495)
chr6 (58-108)||(31888577-31888627)
chr6 (49-108)||(7501356-7501416)
[»] chr4 (11 HSPs)
chr4 (165-244)||(5707100-5707180)
chr4 (100-187)||(53011149-53011238)
chr4 (117-187)||(56563179-56563249)
chr4 (57-185)||(50935647-50935785)
chr4 (57-108)||(5715377-5715428)
chr4 (117-187)||(53008257-53008327)
chr4 (100-162)||(16854014-16854078)
chr4 (60-187)||(50911862-50912000)
chr4 (195-245)||(50911740-50911790)
chr4 (73-108)||(53008351-53008386)
chr4 (195-244)||(50935538-50935587)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 169 - 556
Target Start/End: Complemental strand, 690036 - 689648
Alignment:
Q  169 aagcagcacttcagaagctcatgtttgaagctgcacttcagattctgaacaacaattattgattaatattccaataatttttagtttcaactttagcttc 268  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  690036 aagcagcacttcagaagctcatgttcgaagctgcacttcagattctgaacaacagttattgattaatattccaataatttttagtttcaactttagcttc 689937  T
Q  269 tgcatgtataagtgtactccctcgggcaattattatgag-ggnnnnnnnngctgtttttatgatgattaaaaaatgcagtgnnnnnnnnnntatagtaga 367  Q
    |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||          |||||||||    
T  689936 tgcatgtataagtgtactccctcgggcaattattatgagaaaaaaaaaaagctgtttttatgatgattaaaaaatgcagtgaaaaaaaaaatatagtaga 689837  T
Q  368 atatttgtaaaagaaagttgtattgattattctttaatatcgatatataattacaatgattatttgaaaaaagaaactatcatttnnnnnnnnncttcta 467  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| ||    
T  689836 atatttgtaaaagaaagatgtattgattattctttaatatcgatatataattacaatgattatttgaaaaaagaaactatcatttaaaaaaaaacttata 689737  T
Q  468 gttaaagcacaaattgtagagttttgcataaattattataggttttaacccctattttagaatattaataaaaatatcattttttctag 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  689736 gttaaagcacaaattgtagagttttgcataaattattataggttttaacccctattttagaatattaataaaaatatcattttttctag 689648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 690186 - 690051
Alignment:
Q  43 attaataattgttattatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaactaacta-cctgttaacacgctaaccaaggttggtt 141  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  690186 attaataattgttattatttacaacacatgagtgagtatatatacaactgaacattgtaacaaactaactaccctgttaacacgctaaccaagattggtt 690087  T
Q  142 actaaactctacttctgaagacatcagaagcagcac 177  Q
    |||||||||||||||||||||||||| |||| ||||    
T  690086 actaaactctacttctgaagacatcaaaagctgcac 690051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 32090342 - 32090199
Alignment:
Q  56 attatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact-------------aactacct--gttaacacgctaaccaaggttggt 140  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||             |||||| |  ||||||||||||||| ||||| ||    
T  32090342 attatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactacattggttaacacgctaaccgaggtttgt 32090243  T
Q  141 tactaaactctacttctgaagacatcagaagcagcacttcagaa 184  Q
    ||||| | |||||||||||||||||||||||| | |||||||||    
T  32090242 tactagattctacttctgaagacatcagaagctgtacttcagaa 32090199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 9507712 - 9507626
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaa 184  Q
    |||||||||||||||||  |||||||||||||||||||||  |||||| ||||| |||||||||||||||||||  | |||||||||    
T  9507712 taacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagttgtacttcagaa 9507626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 34854132 - 34854045
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaag 185  Q
    ||||||| |||||||||  ||||||||||||||||| |||  |||||| ||||| ||||||||||||||| |||| |||| |||||||    
T  34854132 taacaaattaactaccttggttaacacgctaaccaaagtttattactagactctgcttctgaagacatcaaaagctgcacatcagaag 34854045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 3627625 - 3627574
Alignment:
Q  57 ttatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  3627625 ttatttacaacacatgagtgagtatatatacatctggacgttgtaacaaact 3627574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 9503785 - 9503735
Alignment:
Q  58 tatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  9503785 tatttacaacacatgagtgagtatatatataactggacgttgtaacaaact 9503735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 9507767 - 9507717
Alignment:
Q  58 tatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    |||||||| |||||||||| ||||||||| ||||| |||||||||||||||    
T  9507767 tatttacaacacatgagtgggtatatatataactggacgttgtaacaaact 9507717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 34854193 - 34854155
Alignment:
Q  57 ttatttacagcacatgagtgagtatatatacaactgaac 95  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  34854193 ttatttacaacacatgagtgagtatatatacaactgaac 34854155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 9503730 - 9503641
Alignment:
Q  100 taacaaactaactacctg--ttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||| ||   |||||||||||||||| |||  |||||| ||||| ||||||||||| ||||||   | ||||||||||||    
T  9503730 taacaaactaactatcttgattaacacgctaaccaaagtttattactagactctgcttctgaagacttcagaaattgtacttcagaagct 9503641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 37186744 - 37186985
Alignment:
Q  14 cagagaaattgtgataaactgaaaaattgattaataattgttattatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact----- 108  Q
    |||||||||||||| ||||| ||||| |||||| | |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||         
T  37186744 cagagaaattgtgaaaaactaaaaaaatgattattgattgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctct 37186843  T
Q  109 --------aactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagctcatgttt-gaa 197  Q
            |||||||   ||||||||  || |||| |||  |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||  |||    
T  37186844 aacaaactaactaccctggttaacactatagccaatgtttattactagactctgcttctaaagacatcagaagctgcacttcagaagctcatgttcagaa 37186943  T
Q  198 gctgcacttcagattctgaacaacaattattgattaatattc 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37186944 gctgcacttcagattctgaacaacaattattgattaatattc 37186985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 37786537 - 37786725
Alignment:
Q  14 cagagaaattgtgataaactgaaaaattgattaataattgttattatttacagcacatgagtgagtatatatacaactgaacgttg-------------t 100  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| ||||||             |    
T  37786537 cagagaaattatgataaactgaaaaattgattaatgattgttattatttacaacacatgagtgaatatatatacaactggacgttgtaacaaagtcctct 37786636  T
Q  101 aacaaactaactacc--tgttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||||   ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||| |||| |||||||||    
T  37786637 aacaaactaactaccctggttaacacgctaaccaaggttggttactagactctgcttatgaagacatcaaaagctgcacatcagaagct 37786725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 37786745 - 37786825
Alignment:
Q  165 tcagaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  37786745 tcagaagcatcacttcagaagctcatgttcagaagctgcacttcagattctaaacaacagttattgattaatattccaata 37786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 37791062 - 37791134
Alignment:
Q  14 cagagaaattgtgataaactgaaaaattgattaataattgttattatttacagcacatgagtgagtatatata 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||    
T  37791062 cagagaaattgtgataaactgaaaaattgattaataattgttattatgtacaacacatcagtgaatatatata 37791134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 37791301 - 37791381
Alignment:
Q  165 tcagaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||||| ||||||||||||||||||||||  |||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  37791301 tcagaaacagcacttcagaagctcatgttcagaagttgcacttcatattctgaacaacagttattgattaatattccaata 37791381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 37791207 - 37791295
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||||||  ||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||| |||| |||||||||    
T  37791207 taacaaactaactaccttggttaacatgctaatcaaggttggttactaa-ctctgcttctgaagacatcagaagctgcacatcagaagct 37791295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 11096261 - 11096211
Alignment:
Q  58 tatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11096261 tatttacaacacatgagtgagtatatatacaactgaacgttgtaacaaact 11096211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 11096186 - 11096134
Alignment:
Q  118 ttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagc 172  Q
    |||||||||||||||| ||| ||||||| ||||  ||||||||||||||||||||    
T  11096186 ttaacacgctaaccaaagtttgttactagactc--cttctgaagacatcagaagc 11096134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 44541314 - 44541579
Alignment:
Q  14 cagagaaattgtgataaactgaaaaattgattaataattgttatt-atttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact---- 108  Q
    ||||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||| || ||||||||||||        
T  44541314 cagagaaattgtgataaactgaacaattgattaataattgttttttatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctc 44541413  T
Q  109 ---------aactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagaca--------------tcagaagcagcacttcaga 183  Q
             |||||||   |||||||| |||| |||||||||||| || ||| | ||||||||||||              |||||||||||||||||||    
T  44541414 taacaaactaactaccctggttaacacactaatcaaggttggttattagactatgcttctgaagacaacagaagctgcacatcagaagcagcacttcaga 44541513  T
Q  184 agctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaataattt 248  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541514 agctcatgttcagaagctgcacttcagattctgaacaacaattattgattaatattccaataattt 44541579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 28920251 - 28920472
Alignment:
Q  39 attgattaataattgttattatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact-------------aactacct--gttaaca 123  Q
    |||||| ||| |||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||             |||||||   |||||||    
T  28920251 attgatcaatgattgttattatttacaacatatgagtgagtatatatacaactggacgttataacaaactcctctaataaactaactaccctggttaaca 28920350  T
Q  124 cgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaaca 222  Q
     |||||||||| ||| |||||| ||| | |||||||||||||||||||| |||||| |||| ||||||||  |||||||||||||||||||||||||| |    
T  28920351 tgctaaccaagattgattactagactatgcttctgaagacatcagaagctgcactttagaaactcatgttcagaagctgcacttcagattctgaacaata 28920450  T
Q  223 attattgattaatattccaata 244  Q
    ||||||||||||||||||||||    
T  28920451 attattgattaatattccaata 28920472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 18641093 - 18641173
Alignment:
Q  165 tcagaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||||||| || |||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18641093 tcagaagctgcgcttcagaagctcatgttcagaagctacacttcagattctgaacaacaattattgattaatattccaata 18641173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 4315641 - 4315552
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||||||  ||||||||||||||||| ||| ||||||| ||||| ||||||||| |||||||||| ||||||||||||||    
T  4315641 taacaaactaactaccttggttaacacgctaaccaacgtttgttactagactctgcttctgaagccatcagaagctgcacttcagaagct 4315552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 531527 - 531655
Alignment:
Q  58 tatttacagcacatgagtgagtatatatacaactgaacgttgtaac-------------aaactaactacc--tgttaacacgctaaccaaggttggtta 142  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||             ||||||||||||  ||||||||||||||||||||||  |||    
T  531527 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaaaaaactaactacctttgttaacacgctaaccaaggtttatta 531626  T
Q  143 ctaaactctacttctgaagacatcagaag 171  Q
    ||| ||||| |||||||||||||||||||    
T  531627 ctagactctgcttctgaagacatcagaag 531655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 32813667 - 32813593
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagc 172  Q
    |||||||||||||||||  ||||||||||||||||||||| ||||||| | ||| ||||| ||||||||| ||||    
T  32813667 taacaaactaactaccttcgttaacacgctaaccaaggtttgttactagattctgcttctaaagacatcaaaagc 32813593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 55418478 - 55418423
Alignment:
Q  117 gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagc 172  Q
    |||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||    
T  55418478 gttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagc 55418423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 4315685 - 4315646
Alignment:
Q  69 catgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  4315685 catgagtgagtatatatacaactggacgttgtaacaaact 4315646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 47743954 - 47743902
Alignment:
Q  56 attatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    |||||||||| ||||||||||| ||||| |||||||  |||||||||||||||    
T  47743954 attatttacaacacatgagtgaatatatttacaactagacgttgtaacaaact 47743902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 55418523 - 55418479
Alignment:
Q  58 tatttacagcacatgagtgagtatatatacaactgaacgttgtaa 102  Q
    ||||||||  ||||||||||||||||||||||||| | |||||||    
T  55418523 tatttacaatacatgagtgagtatatatacaactggaagttgtaa 55418479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 302556 - 302372
Alignment:
Q  15 agagaaattgtgataaactgaaaaattgattaataattgttattatttacagcacatgagtgagtatatatacaactgaacgttg-------------ta 101  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| || |||             ||    
T  302556 agagaaattgtgataaactgaaaaattgattaatgattgttattatttacaacacat-agtgagtatatatacaactggacattgtaacaaactcctcta 302458  T
Q  102 acaaactaactacc--tgttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaag 185  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||    
T  302457 acaaactaactaccctggttaacacgctaaccaaggttggttactagactctgcttctgaagacatcagaagctgcacatcagaag 302372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 295922 - 295734
Alignment:
Q  14 cagagaaattgtgataaactgaaaaattgattaataattgttattatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact----- 108  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||         
T  295922 cagagaaattatgataaactgaaaaattgattaatgattgttattatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctct 295823  T
Q  109 ----aactacct------gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
        ||||| ||      |||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||    
T  295822 aacaaactaactatcctggttaacacactaatcaaggttggttactagactctgcttctgaagacatcagaagctgcacatcagaagct 295734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 29960476 - 29960346
Alignment:
Q  57 ttatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctact 154  Q
    ||||||||| ||||| |||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||||| ||||||| || || ||    
T  29960476 ttatttacaacacataagtgagtatatatacaactagacgttgtaacaaactaactaccttggttaacacgctaaccaaggtttgttactagaccctgct 29960377  T
Q  155 tctgaagacatcagaagcagcacttcagaag 185  Q
    ||||||||||||| |||| || |||||||||    
T  29960376 tctgaagacatcataagctgcccttcagaag 29960346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 13273419 - 13273295
Alignment:
Q  58 tatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctactt 155  Q
    |||||||| ||||||||||| |||||||||||||| ||||   ||||||||||||||||  ||||||||||||||||||||| ||||||| ||||| |||    
T  13273419 tatttacaacacatgagtgaatatatatacaactggacgt---aacaaactaactaccttggttaacacgctaaccaaggtttgttactagactctgctt 13273323  T
Q  156 ctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||    |||||| ||||||||||||||    
T  13273322 ctgaaga----agaagctgcacttcagaagct 13273295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 302350 - 302270
Alignment:
Q  165 tcagaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  302350 tcagaagcagcacttcagaagctcatgttcagaagctgcacttcagattctgaacaacagttattgattcatattccaata 302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 45485784 - 45485929
Alignment:
Q  57 ttatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact-------------aactacct--gttaacacgctaaccaaggttggtt 141  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||             ||||||||  ||||||||||||||||||||| |||    
T  45485784 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttgtt 45485883  T
Q  142 actaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
     ||| |||||  ||||||||||||||||||| ||||||||||||||    
T  45485884 gctagactctgtttctgaagacatcagaagctgcacttcagaagct 45485929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 21794542 - 21794631
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||||||  |||||||||||||||| |||| ||||||| ||||| |||||||||||||||||||| |||| |||||||||    
T  21794542 taacaaactaactaccttggttaacacgctaaccatggtttgttactagactctgcttctgaagacatcagaagctgcacatcagaagct 21794631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 29960336 - 29960257
Alignment:
Q  167 agaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaataa 245  Q
    |||||||||||||||||||||||||||  ||||||||||| || ||||| ||||||| ||||||||||||||||||||||    
T  29960336 agaagcagcacttcagaagctcatgttcagaagctgcactccaaattctaaacaacagttattgattaatattccaataa 29960257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 18164012 - 18163923
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||||||  ||||||||||||||||| | |  |||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  18164012 taacaaactaactaccttggttaacacgctaaccaatggttattactagactctacttctaaagacatcagaagcagcatttcagaagct 18163923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 43081689 - 43081778
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||||||  ||||||| ||||||||| |||  |||||| ||||| |||||||||||||||||||| |||| |||||||||    
T  43081689 taacaaactaactaccttcgttaacatgctaaccaatgtttattactagactctgcttctgaagacatcagaagctgcacatcagaagct 43081778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 39190646 - 39190697
Alignment:
Q  57 ttatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    ||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  39190646 ttatttacaacacatgagtgagtatatatacaactagacgttgtaacaaact 39190697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 18164067 - 18164017
Alignment:
Q  58 tatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    |||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  18164067 tatttacaacacttgagtgagtatatatacaactggacgttgtaacaaact 18164017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 295717 - 295654
Alignment:
Q  176 acttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatatt 238  Q
    ||||||||||||||||||  |||||||||||||| ||||| ||||||| |||| ||||||||||    
T  295717 acttcagaagctcatgttcagaagctgcacttcaaattctaaacaacagttatcgattaatatt 295654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 297153 - 297006
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagctcatgtt-tga 196  Q
    |||||||||||||||||  ||||||||||||||||||||| ||||||||||||   ||||||||||||||||||| |||| ||||||| | |||||  ||    
T  297153 taacaaactaactaccttggttaacacgctaaccaaggtttgttactaaactcagtttctgaagacatcagaagctgcacatcagaagttgatgttcaga 297054  T
Q  197 agctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||| |||||||||  |||||||||| |||||||||||||||| ||||    
T  297053 agctacacttcagaagctgaacaacagttattgattaatattctaata 297006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 45937917 - 45937770
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagctcatgtt-tga 196  Q
    |||| ||||||||||||  |||||||||||||||||||||  |||||| || || ||| ||||||||||| |||| ||||||||||||||||||||   |    
T  45937917 taactaactaactaccttggttaacacgctaaccaaggtttattactagaccctgcttttgaagacatcaaaagctgcacttcagaagctcatgttcaaa 45937818  T
Q  197 agctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    || |||||| |||||||||||||||| |||||||||||||||| ||||    
T  45937817 agttgcactccagattctgaacaacagttattgattaatattctaata 45937770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 293260 - 293112
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagc-tcatgtt-tg 195  Q
    |||||||||||||||||  ||||||||||||||||| ||| ||||||||||||   |||||||||||||| ||||  ||| ||| |||| || ||||  |    
T  293260 taacaaactaactaccttggttaacacgctaaccaatgtttgttactaaactcagtttctgaagacatcaaaagctacacatcaaaagcttcttgttcag 293161  T
Q  196 aagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||||||||||||||  |||||||||| |||||||||||||||| ||||    
T  293160 aagctgcacttcagaagctgaacaacagttattgattaatattctaata 293112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 22582334 - 22582385
Alignment:
Q  57 ttatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  22582334 ttatttacaacacatgagtgagtatatatacaactggacgttgtaccaaact 22582385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 45937960 - 45937922
Alignment:
Q  70 atgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  45937960 atgagtgagtatatatacaactggacgttgtaacaaact 45937922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 293303 - 293266
Alignment:
Q  70 atgagtgagtatatatacaactgaacgttgtaacaaac 107  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  293303 atgagtgagtatatatacaactagacgttgtaacaaac 293266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 49522 - 49381
Alignment:
Q  51 ttgttattatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact-------------aactacct--gttaacacgctaaccaagg 135  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||             ||||||||  |||||||||||||||||||    
T  49522 ttgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaagg 49423  T
Q  136 ttggttactaaactctacttctgaagacatcagaagcagcac 177  Q
    || ||||||| || || |||||||||||||||||||||||||    
T  49422 tttgttactagaccctgcttctgaagacatcagaagcagcac 49381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 49337 - 49254
Alignment:
Q  162 acatcagaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||||||||||   ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  49337 acatcagaagctatacttcagaagctcatgttccgaagctgcacttcagattctgaacaacagttattgattaatactccaata 49254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 28249360 - 28249219
Alignment:
Q  51 ttgttattatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact-------------aactacct--gttaacacgctaaccaagg 135  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||             ||||||||  |||||||||||||||||||    
T  28249360 ttgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaagg 28249261  T
Q  136 ttggttactaaactctacttctgaagacatcagaagcagcac 177  Q
    || ||||||| || || |||||||||||||||||||||||||    
T  28249260 tttgttactagaccctgcttctgaagacatcagaagcagcac 28249219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 31888572 - 31888483
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||||||  ||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||| |||||| |||||||    
T  31888572 taacaaactaactaccttagttaacacgctaaccaaggtttgttactagactatgcttctgaagacatcagaagctgcactttagaagct 31888483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 28249175 - 28249092
Alignment:
Q  162 acatcagaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||||||||||   ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  28249175 acatcagaagctatacttcagaagctcatgttccgaagctgcacttcagattctgaacaacagttattgattaatactccaata 28249092  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 7501421 - 7501495
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagc 172  Q
    |||||||||||||| ||  ||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||    
T  7501421 taacaaactaactatcttggttaacacgctaaccaaggtttgttactagactctgcttgtgaagacatcagaagc 7501495  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 31888627 - 31888577
Alignment:
Q  58 tatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    |||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  31888627 tatttacaacacatgagtgagtatatatacaattgcacgttgtaacaaact 31888577  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 7501356 - 7501416
Alignment:
Q  49 aattgttat-tatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||  ||||||||||||||    
T  7501356 aattgttatctatttacaacacatgagtgagtatataaacaactgggcgttgtaacaaact 7501416  T

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Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 5707180 - 5707100
Alignment:
Q  165 tcagaagcagcacttcagaagctcatgttt-gaagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||||||| || |||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5707180 tcagaagctgcgcttcagaagctcatgttcagaagctacacttcagattctgaacaacaattattgattaatattccaata 5707100  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 53011238 - 53011149
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    |||||||||||||||||  ||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| |||| |||| |||||||||    
T  53011238 taacaaactaactaccttggttaacacgctaaccaatgtttgttactagactctgcttctgaagacatcataagctgcacatcagaagct 53011149  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 56563249 - 56563179
Alignment:
Q  117 gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||| |||||    
T  56563249 gttaacacgctaaccaaggtttgttagtagactctgcttctgaagacatcagaagctgcacttcataagct 56563179  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 50935785 - 50935647
Alignment:
Q  57 ttatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact---------aactacct--gttaacacgctaaccaaggttggttacta 145  Q
    ||||||||| |||||||||||||||||||||||||  | |||||||||||||         ||||||||  |||||||||||||||||| ||| ||||||    
T  50935785 ttatttacaacacatgagtgagtatatatacaactagatgttgtaacaaactcctctaactaactaccttggttaacacgctaaccaagtttg-ttacta 50935687  T
Q  146 aactctacttctgaagacatcagaagcagcacttcagaag 185  Q
     |||| |||||||||||||||| || | |||| |||||||    
T  50935686 gactcaacttctgaagacatcataatctgcacatcagaag 50935647  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 5715428 - 5715377
Alignment:
Q  57 ttatttacagcacatgagtgagtatatatacaactgaacgttgtaacaaact 108  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  5715428 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaact 5715377  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 53008327 - 53008257
Alignment:
Q  117 gttaacacgctaaccaaggttggttactaaactctacttctgaagacatcagaagcagcacttcagaagct 187  Q
    ||||| ||||||||||| ||| ||||||| ||||| |||||||||||||||||||| | ||||||||||||    
T  53008327 gttaatacgctaaccaatgtttgttactagactctgcttctgaagacatcagaagctgtacttcagaagct 53008257  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 16854014 - 16854078
Alignment:
Q  100 taacaaactaactacct--gttaacacgctaaccaaggttggttactaaactctacttctgaaga 162  Q
    ||||||||||||||| |  ||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  16854014 taacaaactaactacgttggttaacacgctaaccaaggtttgttactagactctgcttctgaaga 16854078  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 50912000 - 50911862
Alignment:
Q  60 tttacagcacatgagtgagtatatatacaactgaacgttgtaaca---------aactaactacct--gttaacacgctaaccaaggttggttactaaac 148  Q
    |||||| ||||||||||||||||||||||||||   |||||||||         ||||||||||||  ||||| ||||||||||| ||| ||||||| ||    
T  50912000 tttacaacacatgagtgagtatatatacaactgggtgttgtaacaaactcctctaactaactaccttggttaatacgctaaccaa-gtttgttactagac 50911902  T
Q  149 tcta-cttctgaagacatcagaagcagcacttcagaagct 187  Q
    || | |||||||||||||||||| | |||| |||||||||    
T  50911901 tcaagcttctgaagacatcagaatctgcacatcagaagct 50911862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 50911790 - 50911740
Alignment:
Q  195 gaagctgcacttcagattctgaacaacaattattgattaatattccaataa 245  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||| |||||    
T  50911790 gaagctgcactccagcttctgaacaacagttattgattaatattctaataa 50911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 53008386 - 53008351
Alignment:
Q  73 agtgagtatatatacaactgaacgttgtaacaaact 108  Q
    |||||||||||||||||||| |||||||||||||||    
T  53008386 agtgagtatatatacaactggacgttgtaacaaact 53008351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 50935587 - 50935538
Alignment:
Q  195 gaagctgcacttcagattctgaacaacaattattgattaatattccaata 244  Q
    |||| |||||| ||| |||||||||||| |||||||||||||||| ||||    
T  50935587 gaagttgcactccagcttctgaacaacagttattgattaatattctaata 50935538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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