View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8301_low_5 (Length: 415)

Name: NF8301_low_5
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8301_low_5
NF8301_low_5
[»] chr1 (43 HSPs)
chr1 (132-355)||(50316887-50317111)
chr1 (137-348)||(24438789-24439002)
chr1 (137-269)||(33981645-33981777)
chr1 (199-354)||(13211016-13211172)
chr1 (130-233)||(33983257-33983360)
chr1 (214-355)||(16673175-16673317)
chr1 (169-350)||(7185730-7185912)
chr1 (130-355)||(24437072-24437299)
chr1 (214-356)||(33257878-33258020)
chr1 (214-356)||(33278050-33278192)
chr1 (214-345)||(36146831-36146962)
chr1 (214-350)||(7655183-7655320)
chr1 (219-350)||(33981507-33981639)
chr1 (214-350)||(28920574-28920711)
chr1 (216-350)||(41668276-41668411)
chr1 (300-350)||(46604442-46604492)
chr1 (217-350)||(33259294-33259428)
chr1 (217-350)||(33279453-33279587)
chr1 (237-350)||(36145347-36145461)
chr1 (199-347)||(22684054-22684203)
chr1 (306-350)||(44268891-44268935)
chr1 (301-350)||(16592024-16592073)
chr1 (173-286)||(23080072-23080185)
chr1 (214-355)||(28919081-28919223)
chr1 (302-350)||(50315321-50315369)
chr1 (306-357)||(10708026-10708077)
chr1 (215-350)||(19251082-19251218)
chr1 (301-350)||(7653689-7653738)
chr1 (202-287)||(13209642-13209727)
chr1 (301-350)||(31321012-31321061)
chr1 (302-350)||(7184326-7184374)
chr1 (214-342)||(19057786-19057915)
chr1 (302-350)||(19249323-19249371)
chr1 (301-356)||(31815777-31815832)
chr1 (301-355)||(8323446-8323500)
chr1 (300-350)||(33485328-33485378)
chr1 (301-351)||(40767617-40767667)
chr1 (301-350)||(9626471-9626520)
chr1 (214-287)||(16672722-16672795)
chr1 (217-282)||(28727093-28727158)
chr1 (301-362)||(31809980-31810041)
chr1 (305-350)||(44269085-44269130)
chr1 (306-350)||(35973293-35973337)
[»] chr7 (37 HSPs)
chr7 (130-354)||(11671121-11671346)
chr7 (131-348)||(12180475-12180693)
chr7 (130-355)||(12178481-12178707)
chr7 (214-356)||(40028454-40028597)
chr7 (185-350)||(37133539-37133705)
chr7 (214-356)||(31393578-31393721)
chr7 (214-350)||(21716538-21716675)
chr7 (214-350)||(45277886-45278023)
chr7 (214-350)||(46245125-46245262)
chr7 (214-355)||(31392056-31392198)
chr7 (214-350)||(8231553-8231690)
chr7 (214-350)||(21715075-21715212)
chr7 (214-350)||(40029948-40030085)
chr7 (214-355)||(8230068-8230210)
chr7 (217-350)||(46246497-46246631)
chr7 (215-350)||(13420206-13420342)
chr7 (185-286)||(15135446-15135547)
chr7 (179-260)||(29212341-29212422)
chr7 (217-350)||(37348738-37348872)
chr7 (214-355)||(45276408-45276549)
chr7 (185-350)||(14774516-14774681)
chr7 (185-350)||(15224969-15225134)
chr7 (301-359)||(32882722-32882779)
chr7 (217-350)||(37131838-37131972)
chr7 (214-287)||(32881183-32881256)
chr7 (301-353)||(21016235-21016287)
chr7 (214-338)||(4675716-4675840)
chr7 (301-355)||(3704396-3704450)
chr7 (300-350)||(15136945-15136995)
chr7 (301-350)||(11669844-11669893)
chr7 (306-350)||(31734766-31734810)
chr7 (306-350)||(37350216-37350260)
chr7 (300-350)||(27162001-27162051)
chr7 (301-350)||(706746-706795)
chr7 (301-350)||(708159-708208)
chr7 (311-355)||(25008090-25008134)
chr7 (214-286)||(30792749-30792821)
[»] chr2 (35 HSPs)
chr2 (130-348)||(16142231-16142450)
chr2 (138-356)||(38728182-38728400)
chr2 (137-362)||(38729904-38730131)
chr2 (130-350)||(16143431-16143652)
chr2 (214-355)||(13947746-13947887)
chr2 (214-355)||(14088935-14089076)
chr2 (199-350)||(44464994-44465146)
chr2 (214-357)||(45499301-45499445)
chr2 (186-350)||(44421233-44421398)
chr2 (214-350)||(1841674-1841811)
chr2 (214-350)||(40303296-40303433)
chr2 (216-355)||(1840155-1840295)
chr2 (217-355)||(28563374-28563513)
chr2 (217-350)||(40304684-40304818)
chr2 (216-349)||(15346868-15347002)
chr2 (301-350)||(22060487-22060536)
chr2 (217-350)||(45492954-45493088)
chr2 (217-350)||(45500696-45500830)
chr2 (305-355)||(6842713-6842763)
chr2 (240-350)||(34591728-34591838)
chr2 (200-351)||(472722-472874)
chr2 (211-354)||(22053124-22053267)
chr2 (185-272)||(44419887-44419974)
chr2 (300-350)||(7317393-7317443)
chr2 (301-355)||(35588125-35588179)
chr2 (301-350)||(44492318-44492367)
chr2 (301-357)||(10345154-10345210)
chr2 (300-360)||(28167336-28167396)
chr2 (301-365)||(44097360-44097424)
chr2 (303-354)||(18161052-18161103)
chr2 (301-356)||(22054331-22054386)
chr2 (323-354)||(44419864-44419895)
chr2 (199-350)||(44463569-44463719)
chr2 (300-350)||(6844103-6844153)
chr2 (302-355)||(37393887-37393940)
[»] chr8 (25 HSPs)
chr8 (130-350)||(2552410-2552630)
chr8 (189-287)||(2552648-2552745)
chr8 (204-350)||(3157946-3158093)
chr8 (169-350)||(5461937-5462119)
chr8 (214-350)||(25264343-25264480)
chr8 (185-350)||(15279523-15279689)
chr8 (185-350)||(15459892-15460058)
chr8 (214-350)||(25265824-25265961)
chr8 (215-350)||(39885996-39886132)
chr8 (215-356)||(39884613-39884755)
chr8 (301-356)||(22714056-22714111)
chr8 (214-350)||(33295365-33295501)
chr8 (300-350)||(45448498-45448548)
chr8 (303-356)||(1650219-1650272)
chr8 (300-350)||(17706168-17706218)
chr8 (300-346)||(26719392-26719438)
chr8 (214-355)||(33293937-33294080)
chr8 (301-355)||(36899896-36899950)
chr8 (301-350)||(357980-358029)
chr8 (305-342)||(2552763-2552800)
chr8 (301-350)||(17707455-17707504)
chr8 (301-350)||(26720255-26720304)
chr8 (215-272)||(27166847-27166904)
chr8 (247-287)||(27824484-27824524)
chr8 (302-350)||(31819052-31819100)
[»] chr3 (22 HSPs)
chr3 (186-354)||(41879923-41880091)
chr3 (199-355)||(30700294-30700451)
chr3 (214-356)||(33734421-33734564)
chr3 (214-360)||(40499171-40499318)
chr3 (214-350)||(31796753-31796890)
chr3 (217-352)||(22942337-22942475)
chr3 (217-355)||(48566994-48567133)
chr3 (214-356)||(53527967-53528110)
chr3 (214-355)||(33732963-33733105)
chr3 (214-350)||(41083189-41083327)
chr3 (217-355)||(41081800-41081939)
chr3 (214-357)||(31656949-31657094)
chr3 (214-350)||(48568449-48568586)
chr3 (200-350)||(30701746-30701896)
chr3 (217-355)||(53529456-53529595)
chr3 (217-350)||(31795376-31795510)
chr3 (301-357)||(32615653-32615709)
chr3 (300-354)||(33781500-33781554)
chr3 (301-350)||(32558922-32558971)
chr3 (303-354)||(31017753-31017803)
chr3 (311-355)||(8391399-8391443)
chr3 (302-350)||(24612281-24612329)
[»] chr5 (17 HSPs)
chr5 (199-350)||(27756689-27756841)
chr5 (200-355)||(16308563-16308720)
chr5 (206-350)||(16310010-16310155)
chr5 (214-355)||(38624714-38624856)
chr5 (214-350)||(1418855-1418992)
chr5 (214-350)||(25916197-25916334)
chr5 (214-350)||(30332286-30332423)
chr5 (237-356)||(30333949-30334069)
chr5 (217-355)||(38626092-38626231)
chr5 (303-350)||(18201354-18201401)
chr5 (217-350)||(17554925-17555060)
chr5 (214-350)||(8872523-8872659)
chr5 (214-350)||(39101718-39101855)
chr5 (303-350)||(39103420-39103467)
chr5 (301-350)||(8874281-8874330)
chr5 (301-350)||(36619547-36619596)
chr5 (301-355)||(11771196-11771250)
[»] chr4 (38 HSPs)
chr4 (214-350)||(19995973-19996110)
chr4 (186-287)||(3068991-3069092)
chr4 (214-355)||(44251603-44251745)
chr4 (214-350)||(19994501-19994638)
chr4 (214-356)||(48713381-48713524)
chr4 (186-350)||(10337107-10337271)
chr4 (214-350)||(44253111-44253248)
chr4 (204-355)||(42889720-42889871)
chr4 (186-355)||(54536587-54536758)
chr4 (214-359)||(55948872-55949018)
chr4 (214-357)||(42978838-42978982)
chr4 (301-355)||(38157018-38157072)
chr4 (214-356)||(10338087-10338232)
chr4 (214-355)||(18597630-18597772)
chr4 (214-355)||(42977196-42977338)
chr4 (301-354)||(54534977-54535030)
chr4 (150-357)||(21354632-21354840)
chr4 (214-350)||(32082552-32082689)
chr4 (301-355)||(18597861-18597915)
chr4 (252-350)||(24919055-24919154)
chr4 (213-355)||(33607466-33607609)
chr4 (214-350)||(54123464-54123601)
chr4 (302-345)||(9561854-9561897)
chr4 (301-351)||(22309145-22309195)
chr4 (300-350)||(33609350-33609400)
chr4 (200-286)||(36887021-36887107)
chr4 (300-350)||(48711861-48711911)
chr4 (312-353)||(55017740-55017781)
chr4 (214-287)||(53355167-53355240)
chr4 (301-350)||(55947363-55947412)
chr4 (301-355)||(4906127-4906181)
chr4 (301-355)||(4933338-4933392)
chr4 (301-355)||(29756270-29756324)
chr4 (300-350)||(35786686-35786736)
chr4 (302-352)||(39665272-39665322)
chr4 (301-350)||(4907468-4907517)
chr4 (301-350)||(4932001-4932050)
chr4 (214-287)||(54121894-54121967)
[»] chr6 (14 HSPs)
chr6 (214-350)||(8745435-8745572)
chr6 (214-362)||(1258358-1258508)
chr6 (130-350)||(1443420-1443641)
chr6 (214-350)||(19084039-19084176)
chr6 (215-350)||(8752720-8752856)
chr6 (354-401)||(13699257-13699304)
chr6 (214-350)||(2956154-2956291)
chr6 (301-356)||(1256711-1256766)
chr6 (233-287)||(10699297-10699351)
chr6 (300-355)||(7678653-7678708)
chr6 (301-350)||(4496508-4496557)
chr6 (301-350)||(10707679-10707728)
chr6 (214-287)||(19082733-19082806)
chr6 (216-260)||(7678564-7678608)
[»] scaffold0672 (1 HSPs)
scaffold0672 (215-350)||(449-584)
[»] scaffold0633 (1 HSPs)
scaffold0633 (237-350)||(6836-6950)
[»] scaffold1118 (1 HSPs)
scaffold1118 (301-345)||(2420-2464)
[»] scaffold0489 (2 HSPs)
scaffold0489 (306-350)||(6827-6871)
scaffold0489 (301-355)||(5373-5429)
[»] scaffold0524 (1 HSPs)
scaffold0524 (311-353)||(7698-7740)
[»] scaffold0280 (1 HSPs)
scaffold0280 (301-350)||(12134-12183)
[»] scaffold0129 (1 HSPs)
scaffold0129 (301-350)||(4264-4313)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 132 - 355
Target Start/End: Original strand, 50316887 - 50317111
Alignment:
Q  132 ccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatg 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50316887 ccctataatcttgcgtggaaggacacataaacttgttttgccacgtcaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatg 50316986  T
Q  232 ctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttaca 330  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||       |||| | ||||||||| ||||||||||| ||||||||    
T  50316987 ctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaatcaaaaacacgcgaacttaca 50317086  T
Q  331 gggacgatttacatatttaaacctt 355  Q
     ||||||||||||||||||||||||    
T  50317087 tggacgatttacatatttaaacctt 50317111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 137 - 348
Target Start/End: Original strand, 24438789 - 24439002
Alignment:
Q  137 taatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgat 236  Q
    ||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  24438789 taatcttgcctggaaggacaaataagcttgttttgccacgtcaaacaacgccacgtcagtcaccgttagacacatcaacgtttttgtaacagatgctgac 24438888  T
Q  237 gggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac-nnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttacaggga 334  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||        |||| | ||||||||||||||||||||| || |||||||||    
T  24438889 gggtgggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaacaaaaaaaagatacagggacgaaaaccaaaaacacgcgaatttacaggga 24438988  T
Q  335 cgatttacatattt 348  Q
    ||||||||||||||    
T  24438989 cgatttacatattt 24439002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 33981777 - 33981645
Alignment:
Q  137 taatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgat 236  Q
    ||||||||| || ||||||||||||   ||| ||||||| | ||||||||||| ||| |||||||||||||||||||  |||||||||| |||||||||     
T  33981777 taatcttgcctgaaaggacacataagtctgtgttgccacatcaaacaacgccatgtcggtcaccgttagacacatcaatgtttttgtaatagatgctgac 33981678  T
Q  237 gggagggacgaaaatcaaaacgtttgtaactta 269  Q
    |||||| ||||||||||||||||||||||||||    
T  33981677 gggaggtacgaaaatcaaaacgtttgtaactta 33981645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 199 - 354
Target Start/End: Original strand, 13211016 - 13211172
Alignment:
Q  199 ccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngata 298  Q
    ||||||||||||| |||||||||||||| |||| ||| || |||||  |||| |||||| ||| |||||||||| || |||||||||||       ||||    
T  13211016 ccgttagacacataagcgtttttgtaacggatgatgacggcagggaataaaagcaaaacatttataacttacagggtctgttttagaacaaaaagagata 13211115  T
Q  299 tagg-acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacct 354  Q
     ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  13211116 cagggacgaaaaccaaaaacacacaaacttacagggaagatttacatatttaaacct 13211172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 33983257 - 33983360
Alignment:
Q  130 gtccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacaga 229  Q
    |||||| ||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||| ||| ||||||||| |||||| |||||||||| |    
T  33983257 gtccctgtaatcttgcctggaaggacacataagcatgttttgccacgtcaaacaacgccacgtcagccactgttagacacgtcagcgattttgtaacaaa 33983356  T
Q  230 tgct 233  Q
    ||||    
T  33983357 tgct 33983360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 355
Target Start/End: Original strand, 16673175 - 16673317
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| ||| ||||||||||    
T  16673175 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 16673274  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||||||||| ||||||||||||||||||||||||| ||||    
T  16673275 aaaacacgcaaaattacagggacgatttacatatttaagcctt 16673317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 350
Target Start/End: Original strand, 7185730 - 7185912
Alignment:
Q  169 ttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaactt 268  Q
    ||||||||| | ||| ||||| |||||   |||| |||||||| || |||||||||||||||||||| || |||||| |||| ||||| |||| ||||||    
T  7185730 ttgccacgtcacacatcgccatgtcagctgccgtcagacacataagtgtttttgtaacagatgctgacggaagggaccaaaagcaaaatgtttataactt 7185829  T
Q  269 acagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||| || ||||||||||        |||| | |||||||||| ||||||| ||||||||||| ||||||||| |||||||||    
T  7185830 acagggtctgttttagaataaaaaaagatacagggacgaaaacaaaaaacatgcaaacttacaaggacgatttgcatatttaa 7185912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 355
Target Start/End: Complemental strand, 24437299 - 24437072
Alignment:
Q  130 gtccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcg-tttttgtaacag 228  Q
    |||||| ||||||| | | ||||||||||||| | ||||||||||||| |||||| |||||| ||| |||| |||||||||||| || ||||| |||||     
T  24437299 gtccctgtaatctttcctagaaggacacataagcctgttttgccacgtcaaacaatgccacgccagccaccattagacacatcaacgttttttttaacaa 24437200  T
Q  229 atgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatag-gacgaaaaccaaaaacacgcaaactt 327  Q
    | | | | |  |||||| |||| ||||| |||   || |||||| ||||||||||||||       |||| || ||||||||| |||||||||| |||||    
T  24437199 aagttaacgttagggactaaaaccaaaaagttaacaatttacagggtttgttttagaacaaaaaaagatacagtgacgaaaacaaaaaacacgcgaactt 24437100  T
Q  328 acagggacgatttacatatttaaacctt 355  Q
    ||||||||  ||||||||||||| ||||    
T  24437099 acagggaccttttacatatttaagcctt 24437072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 356
Target Start/End: Complemental strand, 33258020 - 33257878
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| ||| ||||||||||       |||| | |||| |||||||    
T  33258020 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggtt-gttttagaacaaaaaaagatacaaggacaaaaacca 33257922  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||| || ||||||||||||||||||||||||| |||||    
T  33257921 aaaacacgccaaattacagggacgatttacatatttaagcctta 33257878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 356
Target Start/End: Complemental strand, 33278192 - 33278050
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| ||| ||||||||||       |||| | |||| |||||||    
T  33278192 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggtt-gttttagaacaaaaaaagatacaaggacaaaaacca 33278094  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||| || ||||||||||||||||||||||||| |||||    
T  33278093 aaaacacgccaaattacagggacgatttacatatttaagcctta 33278050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 36146831 - 36146962
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatataggacgaaaaccaa 313  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||  | ||||||||||||       |||| ||||||||||||||    
T  36146831 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacatggattgttttagaacaaaaaaagatacaggacgaaaaccaa 36146930  T
Q  314 aaacacgcaaacttacagggacgatttacata 345  Q
    |||||||  || ||||||||||||||||||||    
T  36146931 aaacacgtcaaattacagggacgatttacata 36146962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 7655183 - 7655320
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||  || | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||       |||| ||| ||||||||||    
T  7655183 gcgtttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaacca 7655282  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || ||||||| |||||||||||||||||    
T  7655283 aaaacacgccaaattacaggaacgatttacatatttaa 7655320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 350
Target Start/End: Complemental strand, 33981639 - 33981507
Alignment:
Q  219 tttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatag-gacgaaaaccaaaaac 317  Q
    ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||   |||||||||||||       |||| || ||  ||||||||||||    
T  33981639 tttgtaacacatgttgacgggatggacgaaaatcaaaacgtttgtaacttacatgatttgttttagaacaaaaaaagatacagagaataaaaccaaaaac 33981540  T
Q  318 acgcaaacttacagggacgatttacatatttaa 350  Q
    || | |||||| |||||||||||||||||||||    
T  33981539 acacgaacttatagggacgatttacatatttaa 33981507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 28920574 - 28920711
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||       |||| | |||| ||||| |    
T  28920574 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaggttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacaa 28920673  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||| ||||||||||||    
T  28920674 aaaacacgccaaattacagggacgacttacatatttaa 28920711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 350
Target Start/End: Complemental strand, 41668411 - 41668276
Alignment:
Q  216 gtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatag-gacgaaaaccaaa 314  Q
    ||||||||||||||   ||| ||||| |||||||| ||||| |||  |||||||||||| ||||||||||||        ||| || |||||||||||||    
T  41668411 gtttttgtaacagagtttgacgggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaacaaaaaaatatacagagacgaaaaccaaa 41668312  T
Q  315 aacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||| || |||||| ||||||||||||||||||    
T  41668311 aacacgccaaattacagagacgatttacatatttaa 41668276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 46604492 - 46604442
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  46604492 aggacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaa 46604442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 33259294 - 33259428
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    |||||||||| || | ||| ||||||||||||||| |||| |||  ||||||| || | |||||||| |||       |||| ||| |||||||||||||    
T  33259294 tttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaa 33259393  T
Q  316 acacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| || |||||||||| ||||||||||||||    
T  33259394 acacgccaaattacagggacaatttacatatttaa 33259428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 33279453 - 33279587
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    |||||||||| || | ||| ||||||||||||||| |||| |||  ||||||| || | |||||||| |||       |||| ||| |||||||||||||    
T  33279453 tttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaa 33279552  T
Q  316 acacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| || |||||||||| ||||||||||||||    
T  33279553 acacgccaaattacagggacaatttacatatttaa 33279587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 350
Target Start/End: Complemental strand, 36145461 - 36145347
Alignment:
Q  237 gggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaaacacgcaaacttacagggac 335  Q
    |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| ||| |||||||| ||||| |||| || ||||||||||    
T  36145461 gggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggac 36145362  T
Q  336 gatttacatatttaa 350  Q
    |||||||||||||||    
T  36145361 gatttacatatttaa 36145347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 347
Target Start/End: Original strand, 22684054 - 22684203
Alignment:
Q  199 ccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngata 298  Q
    ||||||||||| |  |||||||| ||||||| | ||| || |||||||||| |||||| |||   || |||||| ||||||||||||||       ||||    
T  22684054 ccgttagacactttggcgtttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaatttacagggtttgttttagaacaaaaaaagata 22684153  T
Q  299 ta-ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatt 347  Q
     | ||||||||||||||||||||| |||||||| ||||  ||||||||||    
T  22684154 catggacgaaaaccaaaaacacgcgaacttacaaggaccttttacatatt 22684203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 44268935 - 44268891
Alignment:
Q  306 aaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  44268935 aaaaccaaaaacacgcgaacttacagggacgatttacatatttaa 44268891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 16592073 - 16592024
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  16592073 ggacgaaaaccaaaaacacgccaaattacagggacaatttacatatttaa 16592024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 23080185 - 23080072
Alignment:
Q  173 cacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacag 272  Q
    ||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| | | || ||  |||||||| ||||| ||  ||||||| ||    
T  23080185 cacgtcaaacaacgccacgtcaaccggcgttagacacatcagcatttttgtaacagatgttaacggaagatacgaaaatgaaaacattattaacttatag 23080086  T
Q  273 agtttgttttagaa 286  Q
      ||||||||||||    
T  23080085 gatttgttttagaa 23080072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 28919223 - 28919081
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| || ||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| | ||| ||||| ||    
T  28919223 gcgtttttgtaacggaagttgacggaagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggatgaaaatca 28919124  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||| || |||||||||| ||||| |||||||| ||||    
T  28919123 aaaacacgccaaattacagggacaatttatatatttaagcctt 28919081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 50315369 - 50315321
Alignment:
Q  302 gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||    
T  50315369 gacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaa 50315321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 10708077 - 10708026
Alignment:
Q  306 aaaaccaaaaacacgcaaacttacagggacgatttacatatttaaaccttat 357  Q
    |||||||||||||||| |||||||||||||  ||||||||||||| ||||||    
T  10708077 aaaaccaaaaacacgcgaacttacagggactttttacatatttaagccttat 10708026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 19251082 - 19251218
Alignment:
Q  215 cgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaa 313  Q
    |||||||||||||||   |||  ||||||||||||| |||||  ||  ||| |||||| | ||||||||||||       |||||||| || || || ||    
T  19251082 cgtttttgtaacagagtttgactggagggacgaaaagcaaaaaattattaatttacaggggttgttttagaacaaaaaaagatatagggacaaacacaaa 19251181  T
Q  314 aaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||  ||||||||||||||||||||||||    
T  19251182 aaacacgcaaaaatacagggacgatttacatatttaa 19251218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 7653738 - 7653689
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||| ||||| |||| || |||||||||||||||||||||||||    
T  7653738 ggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaa 7653689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 13209727 - 13209642
Alignment:
Q  202 ttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    |||||||||| | | ||||||||||||||| ||| || |||||| |||| |||||||||| || ||||||| || | |||||||||    
T  13209727 ttagacacataaacatttttgtaacagatggtgacggcagggaccaaaagcaaaacgtttatatcttacagggtctattttagaac 13209642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 31321061 - 31321012
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||||| |||||||||||| ||||||  |||||||    
T  31321061 ggacgaaaaccaaaaacacgcgaacttacagggatgatttaactatttaa 31321012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 7184374 - 7184326
Alignment:
Q  302 gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||| |||||||| | || ||||||||||||||    
T  7184374 gacgaaaaccaaaaacacgcgaacttacaagaacaatttacatatttaa 7184326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 19057786 - 19057915
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    |||||||||||||||| | ||| || |||||||||||| |||| |||  ||||||| || | ||||||||||||       |||| | | |||||||| |    
T  19057786 gcgtttttgtaacagaagttgacggaagggacgaaaataaaaaagttattaacttataggggttgttttagaacaaaaaaagatacatgaacgaaaacta 19057885  T
Q  313 aaaacacgcaaacttacagggacgatttac 342  Q
    ||||||||| || |||||| ||||||||||    
T  19057886 aaaacacgccaaattacagagacgatttac 19057915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 19249371 - 19249323
Alignment:
Q  302 gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||  | || |||||||||||||||||||||||||    
T  19249371 gacgaaaaccaaaaacaatccaaattacagggacgatttacatatttaa 19249323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 31815777 - 31815832
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||||||||||  ||| |||||||||||||  ||||||||||||| |||||    
T  31815777 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcctta 31815832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 8323446 - 8323500
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||||  ||| |||||||||||||  ||||||||||||| ||||    
T  8323446 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcctt 8323500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 33485328 - 33485378
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||| ||||||||| | || ||||||| |||||||||||||||||    
T  33485328 aggacgaaaaacaaaaacacactaaattacaggaacgatttacatatttaa 33485378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 40767667 - 40767617
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaa 351  Q
    |||| |||||||||||| ||||||||||||| |||  ||||||||||||||    
T  40767667 ggactaaaaccaaaaacgcgcaaacttacagagaccttttacatatttaaa 40767617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 9626520 - 9626471
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||| ||||| |||| |||||||||||||  |||||||||||||    
T  9626520 ggacgaaaacaaaaaatacgcgaacttacagggaccttttacatatttaa 9626471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 16672795 - 16672722
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    ||||||||||||| || | ||| |||||||||| ||||||||| |||  ||||||| || | ||||||||||||    
T  16672795 gcgtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttataggggttgttttagaac 16672722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 28727158 - 28727093
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgtttt 282  Q
    ||||||||| | ||| |||| | | ||||||||||||||||||||| | |||||| ||||||||||    
T  28727158 tttttgtaatatatgatgatagtaaggacgaaaatcaaaacgtttgcatcttacatagtttgtttt 28727093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 31810041 - 31809980
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaaccttatattaa 362  Q
    |||||||||| |||||  ||| |||||||||||||  ||||||||||||| |||| ||||||    
T  31810041 ggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagccttttattaa 31809980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 44269085 - 44269130
Alignment:
Q  305 gaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||| ||||||||||| || |||||| ||||||||||||||||||    
T  44269085 gaaaatcaaaaacacgcgaatttacagagacgatttacatatttaa 44269130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 35973293 - 35973337
Alignment:
Q  306 aaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||| ||||||||||||||||| ||  |||||||||||||||||    
T  35973293 aaaacaaaaaacacgcaaacttatagaaacgatttacatatttaa 35973337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 130 - 354
Target Start/End: Original strand, 11671121 - 11671346
Alignment:
Q  130 gtccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacaga 229  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11671121 gtccctataatcttgtgtggaaggacacataagcttgtttttccacgtcaaacaacgccacgtcagtcaccgttagacacatcagcatttttgtaacaga 11671220  T
Q  230 tgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaactta 328  Q
    |||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||       |||| | |||||||||| |||||||||| ||||||    
T  11671221 tgctgacgagagggacgaaaatcaaaacatttgtaacttacagggtttgttttagaacaaaaatagatacatggacgaaaacaaaaaacacgcgaactta 11671320  T
Q  329 cagggacgatttacatatttaaacct 354  Q
    | ||||||||||||||||||||||||    
T  11671321 cggggacgatttacatatttaaacct 11671346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 131 - 348
Target Start/End: Original strand, 12180475 - 12180693
Alignment:
Q  131 tccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagat 230  Q
    ||||| ||||||||| | |||||| | |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12180475 tccctgtaatcttgcctagaaggataaataagcttgtttttccacgtcaaacaacgccacgtcagtcaccgttagacacatcaacgtttttgtaacagat 12180574  T
Q  231 gctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttac 329  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||       |||| | ||||||||||||||||||||| |||||||    
T  12180575 gctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttac 12180674  T
Q  330 agggacgatttacatattt 348  Q
    |||||| ||| ||||||||    
T  12180675 agggacaattaacatattt 12180693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 130 - 355
Target Start/End: Complemental strand, 12178707 - 12178481
Alignment:
Q  130 gtccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacaga 229  Q
    |||||| ||||||| | | ||||||||||||| | ||||||| ||||| |||||| |||||| ||| ||||||||||||||||||||||||| |||||||    
T  12178707 gtccctgtaatctttcctagaaggacacataagcctgttttgtcacgtcaaacaatgccacgccagccaccgttagacacatcagcgtttttttaacaga 12178608  T
Q  230 tgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaactta 328  Q
     | | | |  |||||| |||| ||||| |||   ||||||||||||||||||||||||       |||| | ||||||||||||||||||||| ||||||    
T  12178607 agttaacgttagggactaaaaccaaaaagttaacaacttacagagtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaactta 12178508  T
Q  329 cagggacgatttacatatttaaacctt 355  Q
     ||||||  ||||||||||||| ||||    
T  12178507 gagggaccttttacatatttaagcctt 12178481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 214 - 356
Target Start/End: Complemental strand, 40028597 - 40028454
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| ||||||||||||||| |||| |||  ||||||| || | ||||||||||||       |||| ||| ||||||||||    
T  40028597 gcgtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 40028498  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  40028497 aaaacacgccaaattacagggacgatttacatatttaaacctta 40028454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 37133539 - 37133705
Alignment:
Q  185 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttag 284  Q
    |||||||||||  ||||||||||||||  | ||||||||||| ||   ||| |||||| ||||||| |||||||||| |||||| | | | |||||||||    
T  37133539 cgccacgtcagcgaccgttagacacataggtgtttttgtaacggaaattgaagggaggaacgaaaaccaaaacgtttataacttccgggggttgttttag 37133638  T
Q  285 aacnnnnnnngatatag-gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||       |||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  37133639 aacaaaaaaagatacagtgacgaaaaccaaaaacacgcgaacttacggggacgatttacatatttaa 37133705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 31393578 - 31393721
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| ||||||||||||||| |||| |||  |||||||||| | |||||||| |||       |||| | ||||||||||||    
T  31393578 gcgtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttacaggggttgttttataacaaaaaaagatacaaggacgaaaacca 31393677  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||| || ||||||||||||||||||||||||| |||||    
T  31393678 aaaacacgccaaattacagggacgatttacatatttaagcctta 31393721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 21716538 - 21716675
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| | |||||||| |||       |||| ||| ||||||||||    
T  21716538 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacaaaaaaagatacagggacgaaaacca 21716637  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || ||||||| |||||||||||||||||    
T  21716638 aaaacacgccaaattacaggaacgatttacatatttaa 21716675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 45277886 - 45278023
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | |||||||| |||       |||| ||| ||||||||||    
T  45277886 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaacca 45277985  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||||||||||||||||    
T  45277986 aaaacacgccaaattacagggacgatttacatatttaa 45278023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 46245262 - 46245125
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||       ||||  || ||||||||||    
T  46245262 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaacca 46245163  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| |||||||||||||  |||||||||||||    
T  46245162 aaaacacgcgaacttacagggaccttttacatatttaa 46245125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 31392198 - 31392056
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||  |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| ||| ||||||||||    
T  31392198 gcgtttttgtaacggaagttggcgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 31392099  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||  || ||||||||||||||||||||||||| ||||    
T  31392098 aaaacacgtcaaattacagggacgatttacatatttaagcctt 31392056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 8231553 - 8231690
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| ||||| |||||||||||||| |||  |||||||||| | ||||||||||||       |||| | |||| |||||||    
T  8231553 gcgtttttgtaacggaagttgacgggagtgacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacca 8231652  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| || || |||||||||||||||||||||||||    
T  8231653 aaaacaagccaaattacagggacgatttacatatttaa 8231690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 21715212 - 21715075
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | |||||||| |||       |||| ||| ||||||| ||    
T  21715212 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagggattgttttaaaacaaaaaaagatacagggacgaaaatca 21715113  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||||||||||||||||    
T  21715112 aaaacacgccaaattacagggacgatttacatatttaa 21715075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 40029948 - 40030085
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| |||| ||||||||||||        ||| | ||| |||||| |    
T  40029948 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttactaacttatagaggttgttttagaacaaaaaaatatacagggatgaaaacaa 40030047  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||||||||||||||||    
T  40030048 aaaacacgccaaattacagggacgatttacatatttaa 40030085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 8230210 - 8230068
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| | ||||||||||||| |||| |||  ||||||| || | ||||||||||||       |||| ||| ||||||||||    
T  8230210 gcgtttttgtaacggaagttgacgagagggacgaaaataaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 8230111  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||| | || ||||||||||||||||||||||||| ||||    
T  8230110 aaaacacaccaaattacagggacgatttacatatttaagcctt 8230068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 46246497 - 46246631
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    ||||| ||||||| | ||| || |||||||||| |||||| |||   ||||||||| ||||||||||||||       |||| ||| |||||||||||||    
T  46246497 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 46246596  T
Q  316 acacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| |||||||||||||  |||||||||||||    
T  46246597 acacgcgaacttacagggaccttttacatatttaa 46246631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 13420206 - 13420342
Alignment:
Q  215 cgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaa 313  Q
    |||||||||||| |||  ||| || |||||| |||| ||||| | || |||||||||| | ||||||||||||       |||| ||| || ||||||||    
T  13420206 cgtttttgtaacggattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaacaaaaaaagatacagggactaaaaccaa 13420305  T
Q  314 aaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||| | ||||||||||||||    
T  13420306 aaacacgcaaacttacaggggccatttacatatttaa 13420342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 15135547 - 15135446
Alignment:
Q  185 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttag 284  Q
    ||||||||||| | ||||||||||| |  |||||||||||||| | | ||| |||||||||||||||||||| |||  |||||| ||| | |||||||||    
T  15135547 cgccacgtcagccgccgttagacactttggcgtttttgtaacaaaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgttttag 15135448  T
Q  285 aa 286  Q
    ||    
T  15135447 aa 15135446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 29212422 - 29212341
Alignment:
Q  179 aaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtt 260  Q
    ||||||| |||||| |||| ||||||||||||||| | ||||| ||||||||| ||| | ||||||||||||| ||||||||    
T  29212422 aaacaacaccacgttagtcgccgttagacacatcaacatttttttaacagatgttgacgagagggacgaaaataaaaacgtt 29212341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 37348872 - 37348738
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    ||||||||||||||  ||| || | |||| |||| |||||||||| |||||||||  | ||||||||||||       |||||||| || ||||||||||    
T  37348872 tttttgtaacagataatgacggcatggactaaaaccaaaacgtttataacttacaaggattgttttagaacaaaaaatgatatagggactaaaaccaaaa 37348773  T
Q  316 acacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| ||||||| ||||| ||||||| ||||||    
T  37348772 acacgcgaacttacggggaccatttacaaatttaa 37348738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 45276549 - 45276408
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||       |||| | |||| |||||||    
T  45276549 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacca 45276450  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||| ||| || ||||| ||||||| ||||||||||| ||||    
T  45276449 aaaactcgccaaattaca-ggacgatctacatatttaagcctt 45276408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 350
Target Start/End: Complemental strand, 14774681 - 14774516
Alignment:
Q  185 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttag 284  Q
    ||||| ||||| |||  |||||||| |  ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||| ||| | |||||||||    
T  14774681 cgccatgtcagccactattagacactttggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgttttag 14774582  T
Q  285 aacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||       |||| | |||||||||| ||||||| || ||||||| ||||| ||||||||||||||    
T  14774581 aac-aaaaatgatacacggacgaaaacaaaaaacatgcgaacttacggggacaatttacatatttaa 14774516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 350
Target Start/End: Complemental strand, 15225134 - 15224969
Alignment:
Q  185 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttag 284  Q
    ||||| ||||| |||  |||||||| |  ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||| ||| | |||||||||    
T  15225134 cgccatgtcagccactattagacactttggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgttttag 15225035  T
Q  285 aacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||       |||| | |||||||||| ||||||| || ||||||| ||||| ||||||||||||||    
T  15225034 aac-aaaaatgatacacggacgaaaacaaaaaacatgcgaacttacggggacaatttacatatttaa 15224969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 32882722 - 32882779
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaaccttatat 359  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  32882722 ggacaaaaaccaaaaacatgcaaa-ttacagggacgatttacatatttaagccttatat 32882779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 37131972 - 37131838
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttaca-gagtttgttttagaacnnnnnnngatatagga-cgaaaaccaaa 314  Q
    |||||||||| || | ||| || ||||||||||| |||||||||| ||||||||| |||||  |||||||||       |||| |||| |||||||||||    
T  37131972 tttttgtaacggaagttgacggaagggacgaaaaccaaaacgtttataacttacatgagtta-ttttagaacaaaaaaagatacaggaacgaaaaccaaa 37131874  T
Q  315 aacacgcaaacttacagggacgatttacatatttaa 350  Q
     |||||| |||||||  |||||||||||||||||||    
T  37131873 cacacgcgaacttacgtggacgatttacatatttaa 37131838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 32881256 - 32881183
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    ||||||||||||| || | |||||||||||||||||||||||| |||  ||||||| || | ||||||||||||    
T  32881256 gcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 32881183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 21016287 - 21016235
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacc 353  Q
    |||| |||| |||||||||||||||||| |||||||||| |||||||||||||    
T  21016287 ggacaaaaaacaaaaacacgcaaacttatagggacgattcacatatttaaacc 21016235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 338
Target Start/End: Original strand, 4675716 - 4675840
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| | ||||||||| ||    
T  4675716 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagtggttgttttagaac-aaaaaagatacatggacgaaaatca 4675814  T
Q  313 aaaacacgcaaacttacagggacgat 338  Q
    ||||||||| || |||||||||||||    
T  4675815 aaaacacgccaaattacagggacgat 4675840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 3704450 - 3704396
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||||||||||||||| || |||||||| ||||||||||| ||||||| ||||    
T  3704450 ggacgaaaaccaaaaacaagcgaacttacatggacgatttacctatttaagcctt 3704396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 15136945 - 15136995
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||| ||||||||||| || |||||||||||||||| ||||||||    
T  15136945 aggacgaaaatcaaaaacacgcgaatttacagggacgatttatatatttaa 15136995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 11669893 - 11669844
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||| || |||||||||||||  |||||||||||||    
T  11669893 ggacgaaaaccaaaaacatgcgaacttacagggaccgtttacatatttaa 11669844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 31734766 - 31734810
Alignment:
Q  306 aaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||    
T  31734766 aaaaccaaaaacacgcgaacttacaaggacgatttacatgtttaa 31734810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 37350216 - 37350260
Alignment:
Q  306 aaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||    
T  37350216 aaaaccaaaaacacgcgaacttacggggaccatttacatatttaa 37350260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 27162001 - 27162051
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||| | ||| |||||||||||||  |||||||||||||    
T  27162001 aggacgaaaaccaaaatctcgcgaacttacagggaccttttacatatttaa 27162051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 706795 - 706746
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||| |||||||||||||||| || ||||||||||  |||||||||||||    
T  706795 ggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaa 706746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 708159 - 708208
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||| |||||||||||||||| || ||||||||||  |||||||||||||    
T  708159 ggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaa 708208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 25008134 - 25008090
Alignment:
Q  311 caaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||| || ||||||||||| ||||||||||||| ||||    
T  25008134 caaaaacacgcgaaattacagggacgttttacatatttaagcctt 25008090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 30792749 - 30792821
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaa 286  Q
    |||||||||||||| |   ||| |||||||||||||| ||||| |||  |||||||||| | |||||||||||    
T  30792749 gcgtttttgtaacaaagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttagaa 30792821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 130 - 348
Target Start/End: Complemental strand, 16142450 - 16142231
Alignment:
Q  130 gtccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacaga 229  Q
    |||||| ||||||||| || |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16142450 gtccctgtaatcttgcctgaaaggacacataagcttgttttgccacgtcaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacaga 16142351  T
Q  230 tgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatag-gacgaaaaccaaaaacacgcaaactta 328  Q
    |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||        ||| || |||||||||||||||||||| ||||||    
T  16142350 tgctgacgggagggccgaaaatcaaaacgtttgtaacttacagggtttgttttagaacagaaaaaaatacagagacgaaaaccaaaaacacgcgaactta 16142251  T
Q  329 cagggacgatttacatattt 348  Q
    || |||||||||||||||||    
T  16142250 caaggacgatttacatattt 16142231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 138 - 356
Target Start/End: Complemental strand, 38728400 - 38728182
Alignment:
Q  138 aatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatg 237  Q
    |||||||| | ||| ||||| ||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||  ||| |    
T  38728400 aatcttgccttgaaagacacgtaagcttgttttgccacgtcaaacaacgccatgtcagtcatcgttagacacatcagcgttttcgtaacagattatgacg 38728301  T
Q  238 ggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttacagggacg 336  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||       |||| | ||||||||||||||||| ||  ||||||||||||||    
T  38728300 ggagggacgaaaatcaaaacgtttgtaacttgcagggtttgttttagaacaaaaaaagatacatggacgaaaaccaaaaactcgtgaacttacagggacg 38728201  T
Q  337 atttacatatttaaacctta 356  Q
    | |||||||||||| |||||    
T  38728200 a-ttacatatttaagcctta 38728182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 137 - 362
Target Start/End: Original strand, 38729904 - 38730131
Alignment:
Q  137 taatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgat 236  Q
    ||||||||| | ||||||||| | | | ||||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||||| ||| |     
T  38729904 taatcttgcctagaaggacacgtgagcctgttttgccacgtcaaacaacgccacgtaaatcaccgttagacacatcagtgtttttgtaacagaggctaac 38730003  T
Q  237 gggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacg-aaaaccaaaaacacgcaaacttacaggga 334  Q
    || ||||||||||||||||| ||||||||||||||| ||||||||||||||       |||| | ||||| |||||||||||||||| |||||||| |||    
T  38730004 ggcagggacgaaaatcaaaaggtttgtaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaaccaaaaacacgcgaacttacaagga 38730103  T
Q  335 cgatttacatatttaaaccttatattaa 362  Q
     |||||| |||||||| |||||| ||||    
T  38730104 tgatttatatatttaagccttattttaa 38730131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 350
Target Start/End: Original strand, 16143431 - 16143652
Alignment:
Q  130 gtccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacaga 229  Q
    |||||| |||||||   ||||||||||||||| | | ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  16143431 gtccctgtaatcttttctggaaggacacataagcctcttttgccacgtcaaacaatgccacgtcagccaccgttagacacatcagcgtttttttaacaga 16143530  T
Q  230 tgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaactta 328  Q
     | | | |  |||||| |||| ||||| |||   ||||||||| ||||||||||||||       |||| | ||||||||| ||||||||||||| ||||    
T  16143531 agttaacgttagggactaaaaccaaaaagttaacaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaatcaaaaacacgcaagctta 16143630  T
Q  329 cagggacgatttacatatttaa 350  Q
    | |||||  |||||||||||||    
T  16143631 cggggaccttttacatatttaa 16143652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 13947887 - 13947746
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatataggacgaaaaccaa 313  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| ||||||||||||||    
T  13947887 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacaggacgaaaaccaa 13947788  T
Q  314 aaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  13947787 aaacacgccaaattacagggacgatttacatatttaaacctt 13947746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 14089076 - 14088935
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatataggacgaaaaccaa 313  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| ||||||||||||||    
T  14089076 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacaggacgaaaaccaa 14088977  T
Q  314 aaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  14088976 aaacacgccaaattacagggacgatttacatatttaaacctt 14088935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 44464994 - 44465146
Alignment:
Q  199 ccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngata 298  Q
    |||| ||||| || |||||||||||||||||| |||| || |||||| |||| ||||| |||| |||||||||  || |||||||||||        |||    
T  44464994 ccgtcagacatataagcgtttttgtaacagatactgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaacaacaaaaaata 44465093  T
Q  299 ta-ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
     | |||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  44465094 caaggacgagaaccaaaaacacgcgaacttacagggacgatttacatatttaa 44465146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 357
Target Start/End: Complemental strand, 45499445 - 45499301
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||       ||||  || ||||||||||    
T  45499445 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaacca 45499346  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaaccttat 357  Q
    ||||||||| |||||||||||||  ||||||||||||| ||||||    
T  45499345 aaaacacgcgaacttacagggaccttttacatatttaagccttat 45499301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 44421233 - 44421398
Alignment:
Q  186 gccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttaga 285  Q
    ||||||||||  |||||||||||||| | ||||||||||||||||| ||| || || ||| |||| |||||||||| |||||||| |  | |||||||||    
T  44421233 gccacgtcagctaccgttagacacataaacgtttttgtaacagatggtgacggcagagaccaaaagcaaaacgtttataacttaccggctctgttttaga 44421332  T
Q  286 acnnnnnnngata-taggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |        ||||  ||||||||||| |||||||||| || ||||||||| |||||||||||||||    
T  44421333 agaaaaaaggatacaaggacgaaaacaaaaaacacgccaatttacagggatgatttacatatttaa 44421398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 1841674 - 1841811
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| ||||||||||||||| |||| |||  |||||||||| | ||||||||||||       |||| | |||| |||||||    
T  1841674 gcgtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacca 1841773  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || || ||||||||||||||||||||||    
T  1841774 aaaacacgccaaatttcagggacgatttacatatttaa 1841811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 40303433 - 40303296
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       ||||  || ||||||||||    
T  40303433 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacggggacgaaaacca 40303334  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| |||||||||||||  |||||||||||||    
T  40303333 aaaacacgcgaacttacagggaccttttacatatttaa 40303296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 355
Target Start/End: Complemental strand, 1840295 - 1840155
Alignment:
Q  216 gtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagga-cgaaaaccaaa 314  Q
    ||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| | || | |||||||||    
T  1840295 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacaagaacaaaaaccaaa 1840196  T
Q  315 aacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||| || ||||||||||||||||||||||||| ||||    
T  1840195 aacacgccaaattacagggacgatttacatatttaagcctt 1840155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 28563513 - 28563374
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaa 315  Q
    |||||||||||||   ||| |||||||||||||| ||||| |||  ||||||| || | |||||||||||        |||| | |||||||||||||||    
T  28563513 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttataggggttgttttagaagaaaaaaagatacaaggacgaaaaccaaaa 28563414  T
Q  316 acacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||| || ||||||||||||||||||||||||| ||||    
T  28563413 acacgccaaattacagggacgatttacatatttaagcctt 28563374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 40304684 - 40304818
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    ||||| ||||||| | ||| || |||||||||| |||||| |||   ||||||||| ||||||||||||||       |||| ||| |||||||||||||    
T  40304684 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 40304783  T
Q  316 acacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| |||||||||||||  |||||||||||||    
T  40304784 acacgcgaacttacagggaccttttacatatttaa 40304818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 349
Target Start/End: Complemental strand, 15347002 - 15346868
Alignment:
Q  216 gtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaa 314  Q
    |||||||||||||||  ||| || | |||| |||| |||||||||| ||| |||||  | ||||||||||||       |||||| ||| ||||||||||    
T  15347002 gtttttgtaacagattatgacggcaaggaccaaaagcaaaacgtttataatttacaagggttgttttagaacaaaaaaagatatatggatgaaaaccaaa 15346903  T
Q  315 aacacgcaaacttacagggacgatttacatattta 349  Q
    ||||||||||||||| | ||| |||||||||||||    
T  15346902 aacacgcaaacttactgagacaatttacatattta 15346868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 22060487 - 22060536
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  22060487 ggacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaa 22060536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 45492954 - 45493088
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    ||||| ||||||| | ||| || |||||||||| |||||| |||   ||||||||| ||||||||||||||       |||| ||| |||||||||||||    
T  45492954 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 45493053  T
Q  316 acacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| || ||||||||||  |||||||||||||    
T  45493054 acacgcgaatttacagggaccttttacatatttaa 45493088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 45500696 - 45500830
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    ||||| ||||||| | ||| || |||||||||| |||||| |||   ||||||||| ||||||||||||||       |||| ||| |||||||||||||    
T  45500696 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 45500795  T
Q  316 acacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| || ||||||||||  |||||||||||||    
T  45500796 acacgcgaatttacagggaccttttacatatttaa 45500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 6842763 - 6842713
Alignment:
Q  305 gaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  6842763 gaaaaccaaaaacacgcaaacttacaggaaccttttacatatttaaacctt 6842713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 350
Target Start/End: Complemental strand, 34591838 - 34591728
Alignment:
Q  240 agggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttacagggacgat 338  Q
    |||||| |||| |||||||||| ||||||| | |||||||||||||||       |||| | |||||||||| ||||| || |||||||||| |||||||    
T  34591838 agggaccaaaagcaaaacgtttataacttaaatagtttgttttagaacaaaaaa-gatacaaggacgaaaacaaaaaatacacaaacttacatggacgat 34591740  T
Q  339 ttacatatttaa 350  Q
    ||||||||||||    
T  34591739 ttacatatttaa 34591728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 351
Target Start/End: Complemental strand, 472874 - 472722
Alignment:
Q  200 cgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttaca-gagtttgttttagaacnnnnnnngata 298  Q
    |||||||||| | ||| ||||||||||||||| |||  | |||||| |||| |||||||||| ||||||||| ||| |||||||||||        |||     
T  472874 cgttagacacgtaagcatttttgtaacagatgatgactgtagggaccaaaaacaaaacgtttataacttacatgag-ttgttttagaataaaaaaagatt 472776  T
Q  299 tagg-acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaa 351  Q
     ||| | ||||||| |||||| || |||||||||| ||||||||||||||||||    
T  472775 caggaatgaaaaccgaaaacaagcgaacttacaggaacgatttacatatttaaa 472722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 354
Target Start/End: Complemental strand, 22053267 - 22053124
Alignment:
Q  211 tcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaa 309  Q
    ||||||||||||||||||| | | | |  |||||| |||| |||||||||| |||||||| | ||| ||||||||||       |||| ||| |||||||    
T  22053267 tcagcgtttttgtaacagaagttaacgttagggactaaaaccaaaacgtttataacttacggggtt-gttttagaacaaaaaaagatacagggacgaaaa 22053169  T
Q  310 ccaaaaacacgcaaacttacagggacgatttacatatttaaacct 354  Q
    | |||||||||| ||||||||  |||  |||||||||||||||||    
T  22053168 caaaaaacacgcgaacttacaaagaccttttacatatttaaacct 22053124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 44419974 - 44419887
Alignment:
Q  185 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacag 272  Q
    |||||||||||   ||||||||||||| |||||||||||||| |||| ||| || | |||  |||| |||||||||| ||||||||||    
T  44419974 cgccacgtcagctgccgttagacacataagcgtttttgtaacggatgatgacggcaaggatcaaaagcaaaacgtttataacttacag 44419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 7317443 - 7317393
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||||| ||||||||||||   |||||||||||||    
T  7317443 aggacgaaaaccaaaaacacgcgaacttacagggatcttttacatatttaa 7317393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 35588179 - 35588125
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||| ||||| |||||||| ||||||||| ||||||||| ||||    
T  35588179 ggacgaaaaccaaaagcacgcgaacttacatggacgatttccatatttaagcctt 35588125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 44492318 - 44492367
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||||||||||||| |||   |||||||||||||    
T  44492318 ggacgaaaaccaaaaacacgcaaacttacatggatcgtttacatatttaa 44492367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 10345154 - 10345210
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaaccttat 357  Q
    |||||||||| |||||  |||||| |||||||||  |||||||||||||||||||||    
T  10345154 ggacgaaaacaaaaaatgcgcaaaattacagggatcatttacatatttaaaccttat 10345210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 28167336 - 28167396
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaaccttatatt 360  Q
    ||||| |||||||||||| ||| |||||||||||||  ||||| |||||||||||| ||||    
T  28167336 aggactaaaaccaaaaacgcgctaacttacagggaccttttacttatttaaaccttttatt 28167396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 44097360 - 44097424
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaaccttatattaacat 365  Q
    ||||||||||||||||||||| ||||||||| |||  |||| |||||||| |||| |||| ||||    
T  44097360 ggacgaaaaccaaaaacacgcgaacttacagagaccttttatatatttaagccttttatttacat 44097424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 18161052 - 18161103
Alignment:
Q  303 acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacct 354  Q
    ||||||| ||||||||||| || ||| | |||||||||||||||||||||||    
T  18161052 acgaaaagcaaaaacacgccaaattatatggacgatttacatatttaaacct 18161103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 22054386 - 22054331
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||||||||||  ||| |||||||||||||  ||||||||||||| |||||    
T  22054386 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcctta 22054331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 354
Target Start/End: Complemental strand, 44419895 - 44419864
Alignment:
Q  323 aacttacagggacgatttacatatttaaacct 354  Q
    ||||||||||||||||||||||||||||||||    
T  44419895 aacttacagggacgatttacatatttaaacct 44419864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 350
Target Start/End: Complemental strand, 44463719 - 44463569
Alignment:
Q  199 ccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngata 298  Q
    ||||||||||||| ||||||||||||||||||| | | |  |||||| |||| || || | || |||||||||| || | |||||||||        |||    
T  44463719 ccgttagacacataagcgtttttgtaacagatgataacgatagggaccaaaagcataaagcttataacttacagggtctattttagaacaaaaaa--ata 44463622  T
Q  299 tag-gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
     ||  ||||||||||||||||| | ||||||||  ||||||||||||||||||    
T  44463621 cagaaacgaaaaccaaaaacacacgaacttacatagacgatttacatatttaa 44463569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 6844103 - 6844153
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||| ||||||||||||||||| |||||||| ||||  |||||||||||||    
T  6844103 aggatgaaaaccaaaaacacgcgaacttacaaggaccttttacatatttaa 6844153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 37393940 - 37393887
Alignment:
Q  302 gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||| |||||||||  |||||||| | ||||||||| ||||||||||||    
T  37393940 gacgaaaacaaaaaacacgtgaacttacatgaacgatttacctatttaaacctt 37393887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 130 - 350
Target Start/End: Complemental strand, 2552630 - 2552410
Alignment:
Q  130 gtccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacaga 229  Q
    |||||| ||||||||| ||||||||||||||| | | |||||||| || |||||||||||  ||||||||||| ||||||||||| |||||||||||| |    
T  2552630 gtccctgtaatcttgcctggaaggacacataagcctcttttgccatgtcaaacaacgccatatcagtcaccgtcagacacatcagtgtttttgtaacaaa 2552531  T
Q  230 tgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaactta 328  Q
    || ||| |||| |||||||||||||||| |||||||||||| | ||||||||||||||       |||  | |||||| || ||||||||||||||||||    
T  2552530 tgttgacgggaaggacgaaaatcaaaacatttgtaacttacggggtttgttttagaac-aaaaaagatgcagggacgataatcaaaaacacgcaaactta 2552432  T
Q  329 cagggacgatttacatatttaa 350  Q
    ||| ||||||||||||||||||    
T  2552431 cagagacgatttacatatttaa 2552410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 2552648 - 2552745
Alignment:
Q  189 acgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  2552648 acgtcagtcaccgttagacacatcatcgtttttgtaatagatgctgatgggagggacgaaaatcaaaacg-ttgtaactaacagggtttgttttagaac 2552745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 350
Target Start/End: Original strand, 3157946 - 3158093
Alignment:
Q  204 agacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg- 302  Q
    |||||||  ||||||| ||||||||||||||| || ||||||  ||| ||||| |||| |||||||||| || |||||||||||       |||| |||     
T  3157946 agacacaaaagcgtttgtgtaacagatgctgacggcagggaccgaaagcaaaatgtttataacttacagggtctgttttagaacaaaaaaagatacaggg 3158045  T
Q  303 acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3158046 acgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaa 3158093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 169 - 350
Target Start/End: Complemental strand, 5462119 - 5461937
Alignment:
Q  169 ttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaactt 268  Q
    ||||||||| | ||| ||||| |||||   |||| | |||||| ||||||||||||||||||||||| || |||||| |||| ||||| |||| ||| ||    
T  5462119 ttgccacgtcacacatcgccatgtcagctgccgtcatacacataagcgtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataaatt 5462020  T
Q  269 acagagtttgttttagaacnnnnnnngata-taggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||| || |||||||||||       ||||  | ||||||||| |||||||||| ||||||| | ||||||||||||||||||    
T  5462019 acagggtctgttttagaacaaaaaaagatacaaagacgaaaacaaaaaacacgcgaacttacggtgacgatttacatatttaa 5461937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 25264480 - 25264343
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||| |||||| | |||||||| |||       |||| | ||||||||||||    
T  25264480 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttacagggattgttttaaaacaaaaaaagatacaaggacgaaaacca 25264381  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||||||||||||||||    
T  25264380 aaaacacgccaaattacagggacgatttacatatttaa 25264343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 15279523 - 15279689
Alignment:
Q  185 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttag 284  Q
    |||||||||||   ||||||||||||| ||| ||||||||||||||| ||| || |||||| |||| || || | || ||| || ||| || |||||||     
T  15279523 cgccacgtcagctgccgttagacacataagcatttttgtaacagatgatgacggtagggaccaaaagcataaggcttataatttgcagggtctgttttaa 15279622  T
Q  285 aacnnnnnnngatatag-gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||       |||| |  |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  15279623 aacaaaaaaagatacaatgacgaaaaccaaaaacacgcgaacttacaaggacgatttacatatttaa 15279689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 15459892 - 15460058
Alignment:
Q  185 cgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttag 284  Q
    |||||||||||   ||||||||||||| ||| ||||||||||||||| ||| || |||||| |||| || || | || ||| || ||| || |||||||     
T  15459892 cgccacgtcagctgccgttagacacataagcatttttgtaacagatgatgacggtagggaccaaaagcataaggcttataatttgcagggtctgttttaa 15459991  T
Q  285 aacnnnnnnngatatag-gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||       |||| |  |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  15459992 aacaaaaaaagatacaatgacgaaaaccaaaaacacgcgaacttacaaggacgatttacatatttaa 15460058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 25265824 - 25265961
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | |||||||| |||       |||| ||| |||||||| |    
T  25265824 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagggattgttttaaaacaaaaaaagatacagggacgaaaacaa 25265923  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||| ||||||||||||||||||    
T  25265924 aaaacacgccaaattacagagacgatttacatatttaa 25265961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 39885996 - 39886132
Alignment:
Q  215 cgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaa 313  Q
    ||||||||||||||||  ||| || |||||| |||| ||||| | || |||||||||| | |||||||||||        |||| ||| || ||||||||    
T  39885996 cgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaataaaaaaagatacagggactaaaaccaa 39886095  T
Q  314 aaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  39886096 aaacacgcgaacttacagggaccatttacatatttaa 39886132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 356
Target Start/End: Complemental strand, 39884755 - 39884613
Alignment:
Q  215 cgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaa 313  Q
    ||||||||||||||||  ||| || |||||| |||| ||||| | || |||||||||  | || |||||||||       |||| ||| || ||||||||    
T  39884755 cgtttttgtaacagattatgaaggcagggactaaaaccaaaatgcttataacttacaagggttattttagaacaaaaaaagatacagggactaaaaccaa 39884656  T
Q  314 aaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    |||||||| ||||||||||||| |||||||||||||| |||||    
T  39884655 aaacacgcgaacttacagggaccatttacatatttaagcctta 39884613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 22714056 - 22714111
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||    
T  22714056 ggacgaaaaccaaaaacacacgaacttacaggggcgatttacatatttaagcctta 22714111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 33295365 - 33295501
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||| ||||||||| |||  |||||||||  | ||||||||||||       |||| | |||| ||||| |    
T  33295365 gcgtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttacaagggttgttttagaac-aaaaaagatacagggacaaaaacaa 33295463  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||| ||||||||||||||||||    
T  33295464 aaaacacgccaaattacagagacgatttacatatttaa 33295501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 45448498 - 45448548
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||||| |||||| ||||||  |||||||||||||    
T  45448498 aggacgaaaaccaaaaacacgcgaacttagagggaccttttacatatttaa 45448548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 1650219 - 1650272
Alignment:
Q  303 acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    |||||||| |||||||||| |||||||| ||||| ||||||||||||| |||||    
T  1650219 acgaaaactaaaaacacgcgaacttacaaggacggtttacatatttaagcctta 1650272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 17706218 - 17706168
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||| |||||||||||||||| || ||||||||||  |||||||||||||    
T  17706218 aggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaa 17706168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 26719438 - 26719392
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatat 346  Q
    ||||||||||| |||||||||| |||||||| ||| |||||||||||    
T  26719438 aggacgaaaacaaaaaacacgcgaacttacatggatgatttacatat 26719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 33294080 - 33293937
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac-nnnnnnngata-taggacgaaaacc 311  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||| ||| || | ||||||||||||        ||||  ||||||||||||    
T  33294080 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttataggggttgttttagaacaaaaaaaagatacaaggacgaaaacc 33293981  T
Q  312 aaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||| ||  || ||||| |||||||||| |||||||| ||||    
T  33293980 aaaaacgcgtcaaattacaaggacgatttatatatttaagcctt 33293937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 36899950 - 36899896
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||| |||||||||||||||| || ||||||||||  ||||||||||||| ||||    
T  36899950 ggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaagcctt 36899896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 358029 - 357980
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||  ||| |||||||||||||  |||||||||||||    
T  358029 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaa 357980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 2552763 - 2552800
Alignment:
Q  305 gaaaaccaaaaacacgcaaacttacagggacgatttac 342  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  2552763 gaaaacaaaaaacacgcgaacttacagggacgatttac 2552800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 17707455 - 17707504
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||| |||||||||||||||| || ||||| |||| ||||||||||||||    
T  17707455 ggactaaaaccaaaaacacgctaaattacatggaccatttacatatttaa 17707504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 26720255 - 26720304
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||||| ||||||  ||||  ||||||||||||||    
T  26720255 ggacgaaaaccaaaaacacgcgaacttatggggattatttacatatttaa 26720304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 27166904 - 27166847
Alignment:
Q  215 cgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacag 272  Q
    ||||||||||||||| ||| | |||||| ||||||||||||||| | | |||||||||    
T  27166904 cgtttttgtaacagaagctaacgggaggaacgaaaatcaaaacgatagcaacttacag 27166847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 27824484 - 27824524
Alignment:
Q  247 aaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    ||||||||||||||| ||||||| || ||||||||||||||    
T  27824484 aaaatcaaaacgtttataacttatagggtttgttttagaac 27824524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 31819100 - 31819052
Alignment:
Q  302 gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||| |||| ||| ||||||||||||  |||||||    
T  31819100 gacgaaaaccaaaaacacacaaaattatagggacgatttatttatttaa 31819052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 186 - 354
Target Start/End: Complemental strand, 41880091 - 41879923
Alignment:
Q  186 gccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttaga 285  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||    
T  41880091 gccacgtcagtcaccgttggacacatcagcatttttataacagatgctgatggga-ggacgaaaatcaaaacgtttataacttacaaggtttgttttaga 41879993  T
Q  286 acnnnnnnngatatag-gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacct 354  Q
    ||       |||| || |||||||||||||||||| | |||||||||  |||||||||||||||||||||    
T  41879992 acaaaaaaagatacagagacgaaaaccaaaaacacacgaacttacagaaacgatttacatatttaaacct 41879923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 30700451 - 30700294
Alignment:
Q  199 ccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngata 298  Q
    |||| |||||||| ||| ||||||||||||||||||| || |||||| |||| ||||| |||| |||||||||| || |||||||||||       ||||    
T  30700451 ccgtcagacacataagcatttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacagggtgtgttttagaacaaaaaaagata 30700352  T
Q  299 -taggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
      |||||||||||||||||||||| |||||| || |||||||||||||||||||||||    
T  30700351 caaggacgaaaaccaaaaacacgcgaacttaaagagacgatttacatatttaaacctt 30700294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 33734421 - 33734564
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagga-cgaaaacca 312  Q
    ||||||||||||| || | |||||||||||||||||||||||| |||  |||||||||| | ||||||||||||       |||| |||| | |||||||    
T  33734421 gcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacaggaaccaaaacca 33734520  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  33734521 aaaacacgctaaattacagggacgatttacatatttaaacctta 33734564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 40499171 - 40499318
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||| | | ||||||||||||       ||||  || ||||||||||    
T  40499171 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttaccggggttgttttagaacaaaaaaagatacggggacgaaaacca 40499270  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaaccttatatt 360  Q
    ||||||||| |||||||||||||  ||||||||||||| |||||||||    
T  40499271 aaaacacgcgaacttacagggaccttttacatatttaagccttatatt 40499318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 31796753 - 31796890
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngata-taggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||       ||||   ||||||||||||    
T  31796753 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacggggacgaaaacca 31796852  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| |||||||||||||  |||||||||||||    
T  31796853 aaaacacgcgaacttacagggaccttttacatatttaa 31796890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 22942475 - 22942337
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata---ggacgaaaaccaa 313  Q
    ||||||||||||||| ||| ||  ||||| |||| |||||||||| ||||||||| || ||||||||||||        |||||   ||| |||||||||    
T  22942475 tttttgtaacagatgatgacggatgggaccaaaaccaaaacgtttataacttacataggttgttttagaacaaaaaaaaatatacagggatgaaaaccaa 22942376  T
Q  314 aaacacgcaaacttacagggacgatttacatatttaaac 352  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  22942375 aaacaagcgaacttacagggacgatttacatatttaaac 22942337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 48567133 - 48566994
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatag-gacgaaaaccaaaa 315  Q
    ||||| ||||||| | ||| || |||||||||| |||||| |||   ||||||||| ||||||||||||||       |||| || ||||||||||||||    
T  48567133 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagtgacgaaaaccaaaa 48567034  T
Q  316 acacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||||||||  ||||||||||||| ||||    
T  48567033 acacgcaaacttacagggaccttttacatatttaagcctt 48566994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 356
Target Start/End: Complemental strand, 53528110 - 53527967
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||||||   ||||||||||||       |||| ||| ||||||||||    
T  53528110 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggagttgttttagaacaaaaaaagatacagggacgaaaacca 53528011  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||| || ||| |||||||||||||| |||||| |||||    
T  53528010 aaaacacgccaaattaaagggacgatttacacatttaagcctta 53527967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 33733105 - 33732963
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagga-cgaaaacca 312  Q
    ||||||||||||| || | ||| |||| ||||||||||||||| |||  ||||||| || | ||||||||||||        ||| |||| |||||||||    
T  33733105 gcgtttttgtaacggaagttgacgggaaggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaaaatacaggaacgaaaacca 33733006  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||| || ||||||||||||||||||||||||| ||||    
T  33733005 aaaacacgccaaattacagggacgatttacatatttaagcctt 33732963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 41083189 - 41083327
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnn-gatatagg-acgaaaacc 311  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||        ||||  || |||||||||    
T  41083189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaaagatacggggacgaaaacc 41083288  T
Q  312 aaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  41083289 aaaaacacgcaaacttacagggaccttttacatatttaa 41083327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 41081939 - 41081800
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    ||||| ||||||| | ||| || |||||||||| |||||| |||   ||||||||| ||||||||||||||       |||| ||| |||||||||||||    
T  41081939 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaa 41081840  T
Q  316 acacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||| |||||||||||||  ||||||||||||| ||||    
T  41081839 acacgcgaacttacagggaccttttacatatttaagcctt 41081800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 357
Target Start/End: Complemental strand, 31657094 - 31656949
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnnga-tata-ggacgaaaacc 311  Q
    ||||||||||||||||   ||| |||||||||||||| ||||| |||  |||||||||| | ||||||||||||        | || | |||||||||||    
T  31657094 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacagggattgttttagaacaaaaaaaaaatacaaggacgaaaacc 31656995  T
Q  312 aaaaacacgcaaacttacagggacgatttacatatttaaaccttat 357  Q
    ||||||| || || ||||||||||||||||||||||||| ||||||    
T  31656994 aaaaacatgccaaattacagggacgatttacatatttaatccttat 31656949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 48568449 - 48568586
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngata-taggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||        |||   ||||||||||||    
T  48568449 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaaaatacggggacgaaaacca 48568548  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| ||||||||| |||  |||||||||||||    
T  48568549 aaaacacgcgaacttacagagaccttttacatatttaa 48568586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 30701746 - 30701896
Alignment:
Q  200 cgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatat 299  Q
    |||||||||||| ||||||||||||||| ||| ||| |  |||||| |||| || || | || |||||||||   | |||||||||||       ||||     
T  30701746 cgttagacacataagcgtttttgtaacaaatgatgacgttagggaccaaaagcataaggcttataacttacatgatctgttttagaacaaaaaaagatac 30701845  T
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||||| |||||| |||   |||||||||||||||    
T  30701846 aggacgaaaaccaaaaacacgcgaacttaaaggagtgatttacatatttaa 30701896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 53529456 - 53529595
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaa 315  Q
    |||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || |  | |||||||||       |||| ||| |||||||| ||||    
T  53529456 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggctattttagaacaaaaaaagatacagggacgaaaactaaaa 53529555  T
Q  316 acacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    | |||| || ||||||||||||||||||||||||| ||||    
T  53529556 atacgccaaattacagggacgatttacatatttaagcctt 53529595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 31795510 - 31795376
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatataggac-gaaaaccaaaa 315  Q
    ||||| ||||||| | ||| || |||||||||| |||||| |||   ||||||||| ||||||||||||||       |||| ||| | |||||||||||    
T  31795510 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggccgaaaaccaaaa 31795411  T
Q  316 acacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| |||||||||||||  ||||| |||||||    
T  31795410 acacgcgaacttacagggaccttttacgtatttaa 31795376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 32615653 - 32615709
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaaccttat 357  Q
    |||| ||||| |||||||||| |||||||||||||  ||||||||||||||||||||    
T  32615653 ggacaaaaacaaaaaacacgcgaacttacagggaccttttacatatttaaaccttat 32615709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 33781500 - 33781554
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacct 354  Q
    ||||||||||| |||||| ||| |||||||||||||  |||||||||||||||||    
T  33781500 aggacgaaaacaaaaaacgcgcgaacttacagggaccttttacatatttaaacct 33781554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 32558971 - 32558922
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||| |||||||||| |||||||||||||  |||||||||||||    
T  32558971 ggacgaaaacaaaaaacacgcgaacttacagggaccttttacatatttaa 32558922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 31017753 - 31017803
Alignment:
Q  303 acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacct 354  Q
    ||||||||||||| ||||| ||||||||  ||||||||||||||||||||||    
T  31017753 acgaaaaccaaaa-cacgcgaacttacacagacgatttacatatttaaacct 31017803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 8391443 - 8391399
Alignment:
Q  311 caaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||| || ||||||||||| ||||||||||||| ||||    
T  8391443 caaaaacacgcgaaattacagggacgttttacatatttaagcctt 8391399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 24612329 - 24612281
Alignment:
Q  302 gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||||||    
T  24612329 gacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaa 24612281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 27756689 - 27756841
Alignment:
Q  199 ccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngata 298  Q
    |||| |||||||| ||||||||||||||| ||||||| || |||||| |||| ||||| |||| ||| |||||| ||||||||||||||       ||||    
T  27756689 ccgtcagacacataagcgtttttgtaacaaatgctgacggcagggaccaaaagcaaaatgtttataatttacagggtttgttttagaacaaaaaaagata 27756788  T
Q  299 ta-ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
     | |||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  27756789 cagggacgaaaacaaaaaacacgcgaacttagagggacgatttacatatttaa 27756841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 16308720 - 16308563
Alignment:
Q  200 cgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnn-gata 298  Q
    |||||||||||| ||||||||||||||||||| ||| || |||||| |||| || || | || |||||||||| || |||||||||||        ||||    
T  16308720 cgttagacacataagcgtttttgtaacagatgatgacggtagggaccaaaagcacaaggcttataacttacagggtctgttttagaacaaaaaaaagata 16308621  T
Q  299 tagg-acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
     ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  16308620 cagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagcctt 16308563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 350
Target Start/End: Original strand, 16310010 - 16310155
Alignment:
Q  206 acacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-ac 304  Q
    |||||| ||||||||||||||||||||||| || |||||| |||| ||||| |||| |||||||||  || |||||||||||        ||||||| ||    
T  16310010 acacataagcgtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaacaaaaaaatatataggaac 16310109  T
Q  305 gaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||  | |||||||| |||||||||||||||||||    
T  16310110 gaaaaccaaaaacatacgaacttacatggacgatttacatatttaa 16310155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 38624856 - 38624714
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       ||||  || ||||||||||    
T  38624856 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacggggacgaaaacca 38624757  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||| |||||||||||||  ||||||||||||| ||||    
T  38624756 aaaacacgcgaacttacagggaccttttacatatttaagcctt 38624714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 1418855 - 1418992
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| | |||||||||| |    
T  1418855 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaa 1418954  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||  || |||||||||||||||||||||||||    
T  1418955 aaaacacgtcaaattacagggacgatttacatatttaa 1418992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 25916197 - 25916334
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| ||||||||||||||| |||| |||  ||||||| || | ||||||||||||       |||| ||| || |||||||    
T  25916197 gcgtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacaaaaacca 25916296  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || ||||| |||||||||||||||||||    
T  25916297 aaaacacgccaaattacatggacgatttacatatttaa 25916334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 30332423 - 30332286
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | |||  ||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| ||| |||||||| |    
T  30332423 gcgtttttgtaacggaagttgacaggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaa 30332324  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||| |||| || |||||||||||||||||||||||||    
T  30332323 aaaatacgccaaattacagggacgatttacatatttaa 30332286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 30333949 - 30334069
Alignment:
Q  237 gggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaaaaacacgcaaacttacagggac 335  Q
    |||||||||||||||||||| |||  |||||||||| | ||||||||||||       |||| ||| || |||||||||||||||| || ||| ||||||    
T  30333949 gggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaacacgccaaattatagggac 30334048  T
Q  336 gatttacatatttaaacctta 356  Q
    || |||||||||||| |||||    
T  30334049 gacttacatatttaagcctta 30334069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 38626092 - 38626231
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaa 315  Q
    ||||| ||||||| | ||| || |||||||||| |||||| |||   ||||||||| ||||||||||||||       |||| | |||||||||||||||    
T  38626092 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacatggacgaaaaccaaaa 38626191  T
Q  316 acacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||| || |||||||||||||  ||||||||||||| ||||    
T  38626192 acatgcgaacttacagggaccttttacatatttaagcctt 38626231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 18201354 - 18201401
Alignment:
Q  303 acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  18201354 acgaaaacaaaaaacacgcaaacttacagggacaatttacatatttaa 18201401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 17554925 - 17555060
Alignment:
Q  217 tttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaa-ccaaa 314  Q
    |||||||||| || | ||| |||||||||||||||||||| |||  |||||| ||| | ||||||||||||        ||| ||| ||||||| |||||    
T  17554925 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgttttagaacaaaaaataatacagggacgaaaaaccaaa 17555024  T
Q  315 aacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||| |||||||| |||| ||||||||||||||    
T  17555025 aacacgcgaacttacatggacaatttacatatttaa 17555060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 8872659 - 8872523
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagga-cgaaaacca 312  Q
    ||||||||||||||||   ||| ||| |||||||||| ||||| |||  |||||||  | | ||||||||||||       |||| |||| |||||||||    
T  8872659 gcgtttttgtaacagagtttgacggg-gggacgaaaagcaaaaagttattaacttatgggggttgttttagaacaaaaaaagatacaggaacgaaaacca 8872561  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||| ||||||||||||    
T  8872560 aaaacacgccaaattacagggacgaattacatatttaa 8872523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 39101855 - 39101718
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagga-cgaaaacca 312  Q
    ||||||||||||||||   ||| |||||||||||||| ||||| |||  |||| ||||| | ||||||||||||       || | || | |||||||||    
T  39101855 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacatacaggggttgttttagaacaaaaaaagacacagaaacgaaaacca 39101756  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||| | | || |||||||||||||||||||||||||    
T  39101755 aaaacgcaccaaattacagggacgatttacatatttaa 39101718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 39103420 - 39103467
Alignment:
Q  303 acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||    
T  39103420 acgaaaaccaaaaacacgccaaattacaaggacgatttacatatttaa 39103467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 8874281 - 8874330
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||| |  || |||||||||||||||||||||||||    
T  8874281 ggacgaaaaccaaaaacaggtcaaattacagggacgatttacatatttaa 8874330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 36619596 - 36619547
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| ||||||||||| || ||| |||||||||||||||||||||    
T  36619596 ggacgaaaatcaaaaacacgccaaattatagggacgatttacatatttaa 36619547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 11771250 - 11771196
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||| |||||||||||||||||||  | ||  ||||||||||||||||||    
T  11771250 ggacgaaaatcaaaaacacgcaaacttactcgaaccttttacatatttaaacctt 11771196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 19995973 - 19996110
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | |||||||||||||||||||||||| |||  |||||||||| | ||||||||||||       |||| | |||| |||||||    
T  19995973 gcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggaccaaaacca 19996072  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||||||||||||||||    
T  19996073 aaaacacgccaaattacagggacgatttacatatttaa 19996110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 3069092 - 3068991
Alignment:
Q  186 gccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttaga 285  Q
    |||||||||| | ||||||| | ||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||| |||||| | ||||||||||    
T  3069092 gccacgtcagccgccgttagccgcatcagcatttttgtaacagatgctaacgggagggacgaaaatcaaaacatttgtaatttacagggattgttttaga 3068993  T
Q  286 ac 287  Q
    ||    
T  3068992 ac 3068991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 44251745 - 44251603
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||||  | ||||||||||||       |||| | ||||||||||||    
T  44251745 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaagggttgttttagaacaaaaaaagatacaaggacgaaaacca 44251646  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||| || ||||||||||||||||||||||||| ||||    
T  44251645 aaaacacgccaaattacagggacgatttacatatttaagcctt 44251603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 19994638 - 19994501
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| || | ||||||||||||       |||| ||| ||||||||||    
T  19994638 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 19994539  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||||||||||||||||    
T  19994538 aaaacacgccaaattacagggacgatttacatatttaa 19994501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 48713381 - 48713524
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||||||   |||  ||||||||||||| ||||| |||  |||||||||| | ||||||||||||       |||| ||| ||||||||||    
T  48713381 gcgtttttgtaacagagtttgactggagggacgaaaagcaaaaggttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaacca 48713480  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||| || ||||||||||||||||||||||||| |||||    
T  48713481 aaaacacgccaaattacagggacgatttacatatttaagcctta 48713524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 350
Target Start/End: Complemental strand, 10337271 - 10337107
Alignment:
Q  186 gccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttaga 285  Q
    ||||||||| |||||||||| ||||   |||| |||||||||||   ||| |||||||| ||||| ||||| |||  |||||||||| | ||||||||||    
T  10337271 gccacgtcactcaccgttagccacaag-gcgtctttgtaacagagtttgacgggagggatgaaaagcaaaaggttattaacttacaggggttgttttaga 10337173  T
Q  286 acnnnnnnngatata-ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||       |||| | ||||||||||||||||||||| || |||||||||||||||||||||||||    
T  10337172 acaaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 10337107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 44253111 - 44253248
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| ||||| |||||||||||||| |||  ||||||| || | ||||||||||||       |||||||| ||||||||||    
T  44253111 gcgtttttgtaacggaagttgacgggagagacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatatagggacgaaaacca 44253210  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || ||| |||||||||||||||||||||    
T  44253211 aaaacacgccaaattaaagggacgatttacatatttaa 44253248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 355
Target Start/End: Original strand, 42889720 - 42889871
Alignment:
Q  204 agacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-gg 302  Q
    |||||||| ||||||||||||||||| | ||| || |||||| |||| ||||| |||| |||||||||  || |||||||||||       |||| | ||    
T  42889720 agacacataagcgtttttgtaacaga-gttgacggcagggaccaaaagcaaaatgtttataacttacatggtctgttttagaacaaaaaaagatacaagg 42889818  T
Q  303 acgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||||| |||||||||  |||||||||||||||||||||||||||| ||||    
T  42889819 acgaaaacaaaaaacacgtgaacttacagggacgatttacatatttaagcctt 42889871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 355
Target Start/End: Original strand, 54536587 - 54536758
Alignment:
Q  186 gccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttaga 285  Q
    ||||||||||   ||||||||||||| | ||||||||||||||||| |||  | |||||| |||| |||||||||| ||| |||||  || |||||||||    
T  54536587 gccacgtcagctgccgttagacacataaacgtttttgtaacagatggtgacagcagggaccaaaagcaaaacgtttataatttacatggtctgttttaga 54536686  T
Q  286 acnnnnnnn-gatata-ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||        |||| | |||| |||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  54536687 acaaaaaaaagatacatggacaaaaaccaagaacacgcgaatttacagggacgatttacatatttaaacctt 54536758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 55948872 - 55949018
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||| ||||||| ||| |||  |||||||||| | ||||||||||||       |||| ||| ||||||||||    
T  55948872 gcgtttttgtaacggaagttgacgggagggaagaaaatccaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaacca 55948971  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaaccttatat 359  Q
    ||||||||| || ||||| ||||||||||||||||||| ||| ||||    
T  55948972 aaaacacgccaaattacaaggacgatttacatatttaagcctaatat 55949018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 357
Target Start/End: Original strand, 42978838 - 42978982
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||||||   ||| |||||||||||||| |||||  ||  |||||||||  | ||||||||||||       |||| ||| ||||||||||    
T  42978838 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaaattattaacttacaaggattgttttagaacaaaaaaagatacagggacgaaaacca 42978937  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaaccttat 357  Q
    ||||||||| || ||||| ||||||||||||||||||| ||||||    
T  42978938 aaaacacgccaaattacaaggacgatttacatatttaagccttat 42978982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 38157072 - 38157018
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  38157072 ggacgaaaaccaaaaacacgcgaacttacagggatgatttacatatttaaacctt 38157018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 10338087 - 10338232
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnn--gatatag-gacgaaaac 310  Q
    ||||||||||||||||   ||| |||||||||||||| ||||| |||  |||||||||| | |||||||| |||         |||| || ||| |||||    
T  10338087 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttaaaacaaaaaaaaagatacagagacaaaaac 10338186  T
Q  311 caaaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  10338187 caaaaacacgcaaaattacatggacgatttacatatttaaacctta 10338232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 18597772 - 18597630
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  |||||||| ||| |||||||||||        |||| | ||||||||||||    
T  18597772 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacggaggttgttttagaataaaaaaagatacagggacgaaaacca 18597673  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||  || ||||| |||||||||| |||||||| ||||    
T  18597672 aaaacacggcaaattacatggacgatttaaatatttaagcctt 18597630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 42977338 - 42977196
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||||||   ||| |||||||||||||| ||||| |||  ||||||| |  | ||||||||||||       |||| ||| ||||||||||    
T  42977338 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttaaatgggttgttttagaacaaaaaaagatacagggacgaaaacca 42977239  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||| || ||||| ||||||||||||||||||| ||||    
T  42977238 aaaacacgccaaattacaaggacgatttacatatttaagcctt 42977196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 54535030 - 54534977
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacct 354  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  54535030 ggacgaaaaccaaaaacacgcgaacttacatggacgatttacatatttaaacct 54534977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 357
Target Start/End: Original strand, 21354632 - 21354840
Alignment:
Q  150 aaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaa 249  Q
    |||||||||||| | ||||||||||||| ||||||   |||| ||| ||||||||||||||||||||||||| ||| |||   | | |  | |||| |||    
T  21354632 aaggacacataagcctgttttgccacgtcaaacaatatcacgccagccaccgttagacacatcagcgttttt-taatagaaattaacgttaaggactaaa 21354730  T
Q  250 atcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgc-aaacttacagggacgatttacatatt 347  Q
    | ||||| |||   ||||||||| ||||||||||||||       |||| | ||||||||| ||||||||||| |||||||||||||   ||||||||||    
T  21354731 accaaaaagttaacaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaatcaaaaacacgcgaaacttacagggatcttttacatatt 21354830  T
Q  348 taaaccttat 357  Q
    ||| ||||||    
T  21354831 taagccttat 21354840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 32082552 - 32082689
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||||||   |||  ||||||||||||| ||||| |||  |||||||||| | || |||||||||       |||| ||| ||||||||||    
T  32082552 gcgtttttgtaacagagtttgacaggagggacgaaaagcaaaaagttattaacttacaggggttattttagaacaaaaaaagatacagggacgaaaacca 32082651  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || ||||| |||||||||||||||||||    
T  32082652 aaaacacgccaaattacacggacgatttacatatttaa 32082689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 18597861 - 18597915
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  18597861 ggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcctt 18597915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 24919154 - 24919055
Alignment:
Q  252 caaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagga-cgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||| ||||| |||||||||| | ||||||||||||       |||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||    
T  24919154 caaagcgtttataacttacaggggttgttttagaacaaaaaaagatacaggaacgaagaccaaaaacacgcaaacttacaggtacgatttacatatttaa 24919055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 355
Target Start/End: Complemental strand, 33607609 - 33607466
Alignment:
Q  213 agcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacc 311  Q
    ||||||||| ||||||||| | | |  |||||| |||| ||||| ||||  ||||||||| |||||||||||||        |||| | |||||||||||    
T  33607609 agcgtttttctaacagatgttaacgttagggactaaaaccaaaatgtttacaacttacagggtttgttttagaaaaaaaaaagatacaaggacgaaaacc 33607510  T
Q  312 aaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||    
T  33607509 aaaaacacgcgaacttacagagaccttttacatatttaaacctt 33607466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 54123464 - 54123601
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    |||||||||| |||||   ||| |||||||||||||| ||||| |||  ||||||||||   ||||||||||||        ||| ||| ||||||||||    
T  54123464 gcgtttttgttacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggagttgttttagaacaaaaaaatatacagggacgaaaacca 54123563  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||| || || |||||||||||||||||||||||||    
T  54123564 aaaacatgccaaattacagggacgatttacatatttaa 54123601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 345
Target Start/End: Complemental strand, 9561897 - 9561854
Alignment:
Q  302 gacgaaaaccaaaaacacgcaaacttacagggacgatttacata 345  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  9561897 gacgaaaaccaaaaacacgcgaacttacagggacgatttacata 9561854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 22309145 - 22309195
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaa 351  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  22309145 ggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaaa 22309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 33609350 - 33609400
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  33609350 aggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaa 33609400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 36887107 - 36887021
Alignment:
Q  200 cgttagacacatcagcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaa 286  Q
    |||||||||||||||| ||||||||||||||| | | ||||| ||||||||| ||||| ||  ||||||| ||  ||||||||||||    
T  36887107 cgttagacacatcagcatttttgtaacagatgttaacgggagagacgaaaatgaaaacattattaacttataggatttgttttagaa 36887021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 48711911 - 48711861
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  48711911 aggacgaaaacaaaaaacacgcaaaattacaaggacgatttacatatttaa 48711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 55017781 - 55017740
Alignment:
Q  312 aaaaacacgcaaacttacagggacgatttacatatttaaacc 353  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  55017781 aaaaacacgcgaacttacagggacgatttacatatttaaacc 55017740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 53355240 - 53355167
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    ||||||||||||| |  | ||| |||||||||||||||||||| |||  |||||||||| | ||||||||||||    
T  53355240 gcgtttttgtaacggcagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 53355167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 55947412 - 55947363
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||| |||  || |||||||||||||||||||||||||    
T  55947412 ggacgaaaaccaaaaatacgtcaaattacagggacgatttacatatttaa 55947363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 4906181 - 4906127
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||||  ||| |||||||||||||  ||||||||||||| ||||    
T  4906181 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcctt 4906127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 4933338 - 4933392
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||||  ||| |||||||||||||  ||||||||||||| ||||    
T  4933338 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcctt 4933392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 29756324 - 29756270
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||||  ||| |||||||||||||  ||||||||||||| ||||    
T  29756324 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcctt 29756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 35786686 - 35786736
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||||  ||| |||||||||||||  |||||||||||||    
T  35786686 aggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaa 35786736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 39665322 - 39665272
Alignment:
Q  302 gacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaac 352  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||||||||||    
T  39665322 gacgaaaacaaaaaatgcgcgaacttacagggaccatttacatatttaaac 39665272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 4907468 - 4907517
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||  ||| |||||||||||||  |||||||||||||    
T  4907468 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaa 4907517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 4932050 - 4932001
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||  ||| |||||||||||||  |||||||||||||    
T  4932050 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaa 4932001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 54121967 - 54121894
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    ||||||||||||||||   | | |||||||||||||| ||||| |||  |||||||||| | ||||||||||||    
T  54121967 gcgtttttgtaacagagtttaacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttagaac 54121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 8745572 - 8745435
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||||||||||||||   ||| |||||||||||||| ||||| |||  |||||||| | | ||||||||||||       |||||||| ||||||||||    
T  8745572 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggggttgttttagaacaaaaaaagatatagggacgaaaacca 8745473  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || |||||||||||||||||||||||||    
T  8745472 aaaacacgccaaattacagggacgatttacatatttaa 8745435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 362
Target Start/End: Original strand, 1258358 - 1258508
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgt-aacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacc 311  Q
    ||||||||||||||||   ||| |||||||||||||| ||||| |||| | ||| || || | ||||||||||||       |||| ||| |||||||||    
T  1258358 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagtttattaacctataggggttgttttagaacaaaaaaagatacagggacgaaaacc 1258457  T
Q  312 aaaaacacgcaaacttacagggacgatttacatatttaaaccttatattaa 362  Q
    |||||||||| || ||||||||||||||||||||||||| |||||| ||||    
T  1258458 aaaaacacgccaaattacagggacgatttacatatttaagccttattttaa 1258508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 130 - 350
Target Start/End: Complemental strand, 1443641 - 1443420
Alignment:
Q  130 gtccctataatcttgcgtggaaggacacataaacttgttttgccacgtgaaacaacgccacgtcagtcaccgttagacacatcagcgtttttgtaacaga 229  Q
    |||||| ||||||| | | ||| ||||||||| | ||||||||||||| |||||| | |||| ||| ||||||||||||||||| ||||||| ||||| |    
T  1443641 gtccctgtaatctttcctagaaagacacataagcctgttttgccacgtcaaacaatgtcacgccagccaccgttagacacatcaacgtttttttaacaaa 1443542  T
Q  230 tgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaaccaaaaacacgcaaactta 328  Q
     | | | |  |||||| |||| ||||| |||   ||||||| | ||||||||||||||        ||| | ||||||||||||||||||||  ||||||    
T  1443541 agttaacgttagggactaaaaccaaaaagttaacaacttaccgggtttgttttagaacaaaaaaaaatacagggacgaaaaccaaaaacacgtgaactta 1443442  T
Q  329 cagggacgatttacatatttaa 350  Q
    |||||||  || ||||||||||    
T  1443441 cagggacctttcacatatttaa 1443420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 19084039 - 19084176
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaacca 312  Q
    ||||| ||||||| || | ||| |||||||||||||||||||| |||  |||| ||||| | ||||||||||||       |||| ||| || |||||||    
T  19084039 gcgttattgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacatacaggggttgttttagaacaaaaaaagatacagggacaaaaacca 19084138  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||| || ||||||||||| |||||||||||||    
T  19084139 aaaacacgctaaattacagggacggtttacatatttaa 19084176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 8752720 - 8752856
Alignment:
Q  215 cgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatagg-acgaaaaccaa 313  Q
    ||||||||||||| |   ||| |||||||||||||| ||||| |||  |||||| ||| | ||||||||||||       |||| ||| |||||||||||    
T  8752720 cgtttttgtaacaaagtttgacgggagggacgaaaagcaaaaggttattaacttgcaggggttgttttagaacaaaaaaagatacagggacgaaaaccaa 8752819  T
Q  314 aaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||| || |||||| ||||||||||||||||||    
T  8752820 aaacacgccaaattacagagacgatttacatatttaa 8752856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 13699257 - 13699304
Alignment:
Q  354 ttatattaacatttgaatttattatgcaatgaatttcaatgaaaataa 401  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13699257 ttatattaacatttgaatttattatgcaatgaatttctatgaaaataa 13699304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 2956154 - 2956291
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatata-ggacgaaaacca 312  Q
    ||||||||||||||||   ||| |||||||||||||| ||||| |||  |||||||| |   ||||||||||||       |||| | ||||||||||||    
T  2956154 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggagttgttttagaacaaaaaaagatacaaggacgaaaacca 2956253  T
Q  313 aaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||   || |||||||||||||||||||||||||    
T  2956254 aaaacacatcaaattacagggacgatttacatatttaa 2956291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 1256766 - 1256711
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctta 356  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||||||| |||||    
T  1256766 ggacgaaaaccaaaaacacgccaaattacaaggacgatttacatatttaagcctta 1256711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 10699351 - 10699297
Alignment:
Q  233 tgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    |||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  10699351 tgatggtagggaccaaaatcaaaacgtttataacttacagaggttgttttagaac 10699297  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 7678653 - 7678708
Alignment:
Q  300 aggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||| |||| ||||||||||| || ||||||||||||||||||||||||| ||||    
T  7678653 aggacaaaaagcaaaaacacgccaaattacagggacgatttacatatttaagcctt 7678708  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 4496557 - 4496508
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||||  ||||||||  |||||||||| |||||||    
T  4496557 ggacgaaaaccaaaaacacgtgaacttacaatgacgatttacctatttaa 4496508  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 10707728 - 10707679
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||  |||||||||| ||||||||||||| ||||| ||||||||    
T  10707728 ggacgaaaataaaaaacacgcgaacttacagggacaatttatatatttaa 10707679  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 19082806 - 19082733
Alignment:
Q  214 gcgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaac 287  Q
    ||||||||||||| || | ||| |||||||||||||||||||| |||  ||||||| |  | ||||||||||||    
T  19082806 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatatgggttgttttagaac 19082733  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 7678564 - 7678608
Alignment:
Q  216 gtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtt 260  Q
    |||||||||||||| ||| | |||||||||||||| |||||||||    
T  7678564 gtttttgtaacagaagctaacgggagggacgaaaagcaaaacgtt 7678608  T

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Target: scaffold0672 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 449 - 584
Alignment:
Q  215 cgtttttgtaacagatgctgatgggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatataggacgaaaaccaaa 314  Q
    |||||| | |||||||| ||||||  ||||| |||| |||||||||| |||||||||| || |||||||||||       ||||| ||||  |||  |||    
T  449 cgttttggcaacagatgatgatggttgggaccaaaaccaaaacgtttataacttacagggtctgttttagaacaaaaagagatattggacagaaataaaa 548  T
Q  315 aacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||| | |||||| |||||||||||||||||||    
T  549 aacacgcgatcttacatggacgatttacatatttaa 584  T

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Target: scaffold0633 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 6836 - 6950
Alignment:
Q  237 gggagggacgaaaatcaaaacgtttgtaacttacagagtttgttttagaacnnnnnnngatatag-gacgaaaaccaaaaacacgcaaacttacagggac 335  Q
    ||||| |||||||| ||||| |||  |||||||||||| ||||||||||||        ||| || |||||||||||||||||||| || |||||| |||    
T  6836 gggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaacaaaaaaatatacagagacgaaaaccaaaaacacgccaaattacagagac 6935  T
Q  336 gatttacatatttaa 350  Q
    |||||||||||||||    
T  6936 gatttacatatttaa 6950  T

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Target: scaffold1118 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 2464 - 2420
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacata 345  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||    
T  2464 ggacgaaaaccaaaaacacgcgaacttacagggaccttttacata 2420  T

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Target: scaffold0489 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 6827 - 6871
Alignment:
Q  306 aaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  6827 aaaaccaaaaacacgccaaattacagagacgatttacatatttaa 6871  T

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Target: scaffold0489; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 5429 - 5373
Alignment:
Q  301 ggacgaaaaccaaaaac--acgcaaacttacagggacgatttacatatttaaacctt 355  Q
    ||||||||||||||||   |||| || ||||||||||||||||||||||||| ||||    
T  5429 ggacgaaaaccaaaaaacaacgccaaattacagggacgatttacatatttaagcctt 5373  T

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Target: scaffold0524 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 7740 - 7698
Alignment:
Q  311 caaaaacacgcaaacttacagggacgatttacatatttaaacc 353  Q
    ||||||||||| || ||||||||||| ||||||||||||||||    
T  7740 caaaaacacgcgaaattacagggacgttttacatatttaaacc 7698  T

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Target: scaffold0280 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 12183 - 12134
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||||||| ||||||| || ||  |||||||||||||    
T  12183 ggacgaaaaccaaaaacacgcgaacttaccggaaccttttacatatttaa 12134  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 4264 - 4313
Alignment:
Q  301 ggacgaaaaccaaaaacacgcaaacttacagggacgatttacatatttaa 350  Q
    ||||||||||||||||  ||| |||||||||||||  |||||||||||||    
T  4264 ggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaa 4313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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