View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8301_low_6 (Length: 386)
Name: NF8301_low_6
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8301_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 29460910 - 29460545
Alignment:
| Q |
19 |
ctatgaccctatggagcctatggaagagccgcaacactaagctttgggagtccaccggcacctctcccaccttcattgttactcgtgccaaagatgtcct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29460910 |
ctatgaccctatggagcctatggaagagccgcaacactaagctttgggagtccaccggcacctctcccaccttcattgttactcgtgccaaagatgtcct |
29460811 |
T |
|
| Q |
119 |
ccatgataaagtgtaacttcaacgcagctaccttctacaacaactcaatcatgggatacaatatgtgcattagagactcattggggttgattcgttaaat |
218 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29460810 |
ccatgataaagtgtaacgtcaacgcagctaccttccacaacaactcaatcatgggatacaatatgtgctttagagactcattggggttgattcgttaaat |
29460711 |
T |
|
| Q |
219 |
caaacatgttggatttctccgtcacgatactaaaagcataatccattggtttactggaaagtagaatctatctaaataggaacatcaaatggattgcaca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29460710 |
caaacatgttggatttctccgtcacgatactaaaagcataatccattggtttactagaaagtagaatctatctaaataggaacatcaaatggattgcaca |
29460611 |
T |
|
| Q |
319 |
acatttgccttgaaacggactgtaagtctttagttgatgcatttgctacttctgatgtccatctca |
384 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |
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| T |
29460610 |
acatttgctttgaaacggactgtaagtctttagttgatgcacttgctacttctaatgtccctctca |
29460545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 43969540 - 43969619
Alignment:
| Q |
17 |
cactatgaccctatggagcctatggaagagccgcaacactaagctttgggagtccaccggcacctctcccaccttcattgt |
97 |
Q |
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| T |
43969540 |
cactatgaccctttg-agcctacggaagagccgaaacactaaactttgggagtccactgacacctctcgcaccttcattgt |
43969619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 43969743 - 43969798
Alignment:
| Q |
142 |
gcagctaccttctacaacaactcaatcatgggatacaatatgtgcattagagactc |
197 |
Q |
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|||||||||||| |||||||||| |||||||||||||| |||||| |||||||||| |
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| T |
43969743 |
gcagctaccttcaacaacaactctatcatgggatacaacatgtgctttagagactc |
43969798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 13021506 - 13021401
Alignment:
| Q |
19 |
ctatgaccctatggagcctatggaagagccgcaacactaagctttgggagtccaccggcacctctcccaccttcattgttactcgtgccaaagatgtcct |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| | |||||||| |||| || |
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| T |
13021506 |
ctatgaccctttggagcctatggaagagccgcaacactaaactttgggagtccactgacacctctcccaccttcattgtcaaccgtgccaaggatgctct |
13021407 |
T |
|
| Q |
119 |
ccatga |
124 |
Q |
| |
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|||||| |
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| T |
13021406 |
ccatga |
13021401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 13093030 - 13092925
Alignment:
| Q |
19 |
ctatgaccctatggagcctatggaagagccgcaacactaagctttgggagtccaccggcacctctcccaccttcattgttactcgtgccaaagatgtcct |
118 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||| | ||||||||||||||||||||| | |||||||| |||| || |
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| T |
13093030 |
ctatgaccctttggagcctatggaagagccacaacactaaactttgagagtccactgacacctctcccaccttcattgtcaaccgtgccaaggatgctct |
13092931 |
T |
|
| Q |
119 |
ccatga |
124 |
Q |
| |
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|||||| |
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|
| T |
13092930 |
ccatga |
13092925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 13021320 - 13021245
Alignment:
| Q |
122 |
tgataaagtgtaacttcaacgcagctaccttctacaacaactcaatcatgggatacaatatgtgcattagagactc |
197 |
Q |
| |
|
|||||||||||||| || | |||||||||||| || ||||||| |||||||||||| ||||||| |||||||||| |
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| T |
13021320 |
tgataaagtgtaacgtcgatgcagctaccttcaacgacaactctatcatgggatacggtatgtgctttagagactc |
13021245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 13092844 - 13092769
Alignment:
| Q |
122 |
tgataaagtgtaacttcaacgcagctaccttctacaacaactcaatcatgggatacaatatgtgcattagagactc |
197 |
Q |
| |
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|||||||||||||| || | |||||||||||| || ||||||| |||||||||||| ||||||| |||||||||| |
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| T |
13092844 |
tgataaagtgtaacgtcgatgcagctaccttcaacgacaactctatcatgggatacggtatgtgctttagagactc |
13092769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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