View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8301_low_7 (Length: 288)
Name: NF8301_low_7
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8301_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 4803621 - 4803759
Alignment:
| Q |
7 |
gaacacagaagtgagatgttattagaaaaatgcaatgcggcattgtgactttagacttttaaaagggaattgtgtgtgacagtcttaacgtttgcttaga |
106 |
Q |
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| T |
4803621 |
gaacacagaagtgagatgttattagaaaaatgctatgcggcattgtgactttagacttttaaaagggaattgtgtgtgacagtcttaacgtttgcttaga |
4803720 |
T |
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| Q |
107 |
gttgcaaaagggatattcagcaacttctggtaaaccatt |
145 |
Q |
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| T |
4803721 |
gttgcaaaagggatattcagcaacttctggtaaaccatt |
4803759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 4803760 - 4803871
Alignment:
| Q |
177 |
tctttttgaaaccaagaaccaccgaaaaccgacacttgcattcaagaacttcggtctgattcttgtgtcggtatcaaaatttgaatcgctttttcgcctt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4803760 |
tctttttgaaaccaagaaccaccgaaaaccgacacttgcattcaagaacttcggtctgattcttgtgtcggtatcaaaatttgaatcgctttttcgcctt |
4803859 |
T |
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| Q |
277 |
ccgatgcttctc |
288 |
Q |
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| T |
4803860 |
ccgatgcttctc |
4803871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 4806193 - 4806321
Alignment:
| Q |
119 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaaccaccgaaaaccgacacttgcatt |
218 |
Q |
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| T |
4806193 |
atattcagcaacttctggtaaatcattacacacacaaatgaaaaccaggtt-aatatatcttttcggaagaaagaaccacc-aaaaccgacgtttgcatt |
4806290 |
T |
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| Q |
219 |
caagaacttcggtctgattcttgtgtcggta |
249 |
Q |
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| T |
4806291 |
caagaacttcagtctgattcttgtgtcggta |
4806321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 4824146 - 4824251
Alignment:
| Q |
119 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaaccaccgaaaaccgacacttgcatt |
218 |
Q |
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|||||||| ||||||||||||| ||| |||| ||||||| ||||||||||||||||||| ||||| || ||| ||||||| |||| ||| ||||||||| |
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| T |
4824146 |
atattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaaaaaccacc-aaaaacgatacttgcatt |
4824244 |
T |
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| Q |
219 |
caagaac |
225 |
Q |
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| T |
4824245 |
ctagaac |
4824251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 4819127 - 4819204
Alignment:
| Q |
119 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaacc |
196 |
Q |
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|||||||| |||||| |||||||||| ||| |||||| |||||||||||| |||||||||||| || |||||||| |
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| T |
4819127 |
atattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaagaacc |
4819204 |
T |
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