View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8301_low_8 (Length: 254)
Name: NF8301_low_8
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8301_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 42066121 - 42066334
Alignment:
| Q |
25 |
aaatgaactttagtagtcttaattaagaaaaaatactagtaaaaggcaaaacacattacatttttaattcaaattcttgtctcttcaaaactagtcaact |
124 |
Q |
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| T |
42066121 |
aaatgaactttagtcgtcttaattaagaaaaaatactggtaaaaggcaaaacacattacatttttaattcaaattcttgtctcttcaaaactagtcaact |
42066220 |
T |
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| Q |
125 |
accaagaagaaaatttattgatgcctagtacaacagttagttgaatttgaaacttttgaagacaatggcagtgtatgagttacgttcaaaaagagactga |
224 |
Q |
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| T |
42066221 |
accaagaagaaaatttattgatgcctagtacaatagttagttgaatttgaaacttttgaagacaatggcagtgtatgagttacgttcaaaaagagactga |
42066320 |
T |
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| Q |
225 |
tttgaacttcagat |
238 |
Q |
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|||||||||||||| |
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| T |
42066321 |
tttgaacttcagat |
42066334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 42045045 - 42045002
Alignment:
| Q |
71 |
caaaacacattacatttttaattcaaattcttgtctcttcaaaa |
114 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
42045045 |
caaaacacattacatttttaattcaaattttagtctcttcaaaa |
42045002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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