View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8301_low_9 (Length: 250)

Name: NF8301_low_9
Description: NF8301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8301_low_9
NF8301_low_9
[»] chr4 (31 HSPs)
chr4 (5-176)||(47019999-47020170)
chr4 (10-176)||(779437-779601)
chr4 (71-176)||(42118974-42119080)
chr4 (71-175)||(52789395-52789500)
chr4 (71-175)||(43502267-43502372)
chr4 (71-175)||(33985431-33985536)
chr4 (79-176)||(37694493-37694591)
chr4 (89-176)||(52032683-52032771)
chr4 (10-88)||(34939480-34939558)
chr4 (79-176)||(45042990-45043088)
chr4 (74-175)||(54808986-54809088)
chr4 (71-160)||(54703637-54703726)
chr4 (83-174)||(34939342-34939434)
chr4 (89-175)||(51242828-51242915)
chr4 (10-89)||(42118863-42118941)
chr4 (10-90)||(54703525-54703605)
chr4 (16-135)||(32935629-32935747)
chr4 (10-89)||(45043111-45043190)
chr4 (9-86)||(52789282-52789359)
chr4 (10-90)||(36047011-36047091)
chr4 (10-90)||(37694631-37694711)
chr4 (71-158)||(9242920-9243006)
chr4 (10-51)||(33983756-33983797)
chr4 (10-51)||(43501716-43501757)
chr4 (10-51)||(52790466-52790507)
chr4 (10-90)||(52032802-52032882)
chr4 (71-116)||(27761173-27761217)
chr4 (10-90)||(33985568-33985649)
chr4 (10-51)||(38131326-38131367)
chr4 (71-116)||(49065594-49065638)
chr4 (18-90)||(2777870-2777942)
[»] chr1 (28 HSPs)
chr1 (10-176)||(49150483-49150650)
chr1 (10-176)||(15399008-15399175)
chr1 (70-175)||(33686526-33686632)
chr1 (73-175)||(7014756-7014859)
chr1 (71-175)||(43138631-43138736)
chr1 (79-176)||(1671308-1671405)
chr1 (10-90)||(12926715-12926795)
chr1 (79-160)||(12926835-12926916)
chr1 (10-90)||(10308361-10308441)
chr1 (73-172)||(22605440-22605540)
chr1 (74-160)||(10308476-10308561)
chr1 (72-172)||(49597193-49597293)
chr1 (10-90)||(33296425-33296505)
chr1 (10-90)||(33686663-33686743)
chr1 (74-172)||(41871735-41871833)
chr1 (9-84)||(43138774-43138849)
chr1 (90-158)||(30858515-30858583)
chr1 (8-51)||(4199105-4199148)
chr1 (10-49)||(49000853-49000892)
chr1 (70-136)||(20447164-20447230)
chr1 (70-136)||(20532927-20532993)
chr1 (10-51)||(23941468-23941509)
chr1 (10-51)||(39222590-39222631)
chr1 (10-51)||(43514925-43514966)
chr1 (10-82)||(12068020-12068092)
chr1 (10-90)||(22605326-22605406)
chr1 (16-48)||(41871626-41871658)
chr1 (71-147)||(47983681-47983756)
[»] chr5 (15 HSPs)
chr5 (10-160)||(7662202-7662352)
chr5 (71-175)||(1081870-1081975)
chr5 (71-175)||(18172117-18172222)
chr5 (70-175)||(12144045-12144151)
chr5 (71-149)||(2786732-2786810)
chr5 (71-175)||(34954048-34954153)
chr5 (71-143)||(43147441-43147513)
chr5 (79-176)||(40033982-40034081)
chr5 (10-90)||(18172254-18172334)
chr5 (28-90)||(24531047-24531109)
chr5 (10-78)||(14804362-14804430)
chr5 (18-90)||(2786628-2786700)
chr5 (74-136)||(10532795-10532856)
chr5 (10-88)||(15106416-15106494)
chr5 (10-90)||(1082007-1082086)
[»] chr8 (23 HSPs)
chr8 (71-176)||(4759190-4759295)
chr8 (74-176)||(1217794-1217897)
chr8 (70-160)||(9039664-9039754)
chr8 (10-88)||(1217679-1217757)
chr8 (10-87)||(42182548-42182625)
chr8 (10-82)||(23810900-23810972)
chr8 (71-162)||(5913112-5913203)
chr8 (80-158)||(42182669-42182747)
chr8 (83-160)||(4322708-4322785)
chr8 (10-90)||(4759327-4759407)
chr8 (39-176)||(2766844-2766982)
chr8 (82-160)||(35161617-35161694)
chr8 (10-90)||(15743308-15743388)
chr8 (10-75)||(5913980-5914045)
chr8 (10-90)||(9039553-9039633)
chr8 (110-160)||(15739705-15739755)
chr8 (9-51)||(23542901-23542943)
chr8 (102-159)||(23810856-23810912)
chr8 (18-86)||(35161503-35161571)
chr8 (71-113)||(15743234-15743276)
chr8 (10-91)||(5015367-5015447)
chr8 (10-51)||(43693723-43693764)
chr8 (11-51)||(37226988-37227028)
[»] chr3 (12 HSPs)
chr3 (9-175)||(2447532-2447699)
chr3 (71-176)||(49303208-49303314)
chr3 (71-175)||(49501514-49501619)
chr3 (74-175)||(41649949-41650051)
chr3 (71-160)||(49742097-49742186)
chr3 (70-175)||(23029646-23029752)
chr3 (10-87)||(49501654-49501731)
chr3 (10-90)||(37282843-37282923)
chr3 (74-172)||(25574829-25574927)
chr3 (9-89)||(47560497-47560577)
chr3 (63-172)||(39415336-39415446)
chr3 (63-136)||(48086833-48086906)
[»] chr2 (28 HSPs)
chr2 (71-176)||(5290682-5290787)
chr2 (71-176)||(4616619-4616725)
chr2 (71-176)||(26257757-26257863)
chr2 (71-175)||(32737854-32737959)
chr2 (74-175)||(41192365-41192467)
chr2 (79-175)||(5814517-5814614)
chr2 (71-175)||(34619883-34619988)
chr2 (11-89)||(4616758-4616836)
chr2 (88-175)||(6728635-6728723)
chr2 (8-92)||(34619999-34620083)
chr2 (71-175)||(1887918-1888023)
chr2 (71-175)||(21083768-21083872)
chr2 (79-176)||(2195149-2195246)
chr2 (10-90)||(41192502-41192582)
chr2 (11-89)||(5290820-5290897)
chr2 (71-176)||(37057199-37057305)
chr2 (11-90)||(6728507-6728586)
chr2 (10-87)||(32737994-32738071)
chr2 (18-90)||(1887814-1887886)
chr2 (10-90)||(29132754-29132834)
chr2 (31-84)||(26257886-26257939)
chr2 (42-90)||(5814655-5814703)
chr2 (72-116)||(37891765-37891809)
chr2 (63-172)||(29908493-29908603)
chr2 (73-138)||(12874244-12874308)
chr2 (10-51)||(19380291-19380332)
chr2 (33-90)||(21083679-21083736)
chr2 (15-51)||(28030431-28030467)
[»] scaffold0051 (2 HSPs)
scaffold0051 (70-175)||(20092-20198)
scaffold0051 (10-92)||(20001-20082)
[»] chr7 (14 HSPs)
chr7 (71-176)||(39283989-39284095)
chr7 (10-175)||(14678225-14678409)
chr7 (71-160)||(4035150-4035239)
chr7 (9-90)||(39283876-39283957)
chr7 (70-175)||(37450001-37450107)
chr7 (89-175)||(3742352-3742439)
chr7 (72-157)||(40144784-40144869)
chr7 (71-136)||(8260879-8260944)
chr7 (10-90)||(4035271-4035351)
chr7 (72-134)||(30362750-30362812)
chr7 (62-136)||(27874048-27874122)
chr7 (10-51)||(14679280-14679321)
chr7 (11-51)||(34354515-34354555)
chr7 (63-158)||(41219376-41219471)
[»] chr6 (8 HSPs)
chr6 (70-174)||(3515201-3515306)
chr6 (71-175)||(11599019-11599124)
chr6 (73-176)||(30634096-30634200)
chr6 (10-90)||(30634234-30634314)
chr6 (10-87)||(11598907-11598984)
chr6 (10-69)||(3515359-3515419)
chr6 (31-136)||(17398993-17399097)
chr6 (10-51)||(11600015-11600056)
[»] scaffold0753 (1 HSPs)
scaffold0753 (71-158)||(3998-4085)
[»] scaffold0861 (1 HSPs)
scaffold0861 (10-86)||(3848-3924)
[»] scaffold0217 (1 HSPs)
scaffold0217 (71-158)||(25598-25685)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 47019999 - 47020170
Alignment:
Q  5 aatcggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctg 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47019999 aatcggaattttgctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctg 47020098  T
Q  105 cgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggtcaatgc 176  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  47020099 cgcgagttaacttgcgcaagttggacggtggtaaaaactgaagcaaaaacgtttctgaacggtggacaatgc 47020170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 779601 - 779437
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcga 109  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||| ||   ||||||||||| ||||||||||| ||| |    
T  779601 gaattttgctcttcacctagcacatttcgctcgcgccctacatgtttttcaaatataaccctgcgcga---aagtcacgcacaactgagcctcttcgcaa 779505  T
Q  110 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 176  Q
    ||||||||||||||||||| |||||||||||| | |||||  ||||||| | ||||||||||||||||    
T  779504 gttaacttgcgcaagttggccggtggtaaaaattgaagcattaacgtttttgggacggtggtcaatgc 779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 42118974 - 42119080
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 169  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||    
T  42118974 tgcgtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtgg 42119073  T
Q  170 tcaatgc 176  Q
    |||||||    
T  42119074 tcaatgc 42119080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 52789395 - 52789500
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  52789395 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtag 52789494  T
Q  170 tcaatg 175  Q
    ||||||    
T  52789495 tcaatg 52789500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 43502372 - 43502267
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  43502372 tgcgtgacttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtag 43502273  T
Q  170 tcaatg 175  Q
    ||||||    
T  43502272 tcaatg 43502267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 33985536 - 33985431
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| |||||||||||| |||  |||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||| ||||||||||    
T  33985536 tgcgtgacttaagtcacgcaacacaaagcctctgcgcgagttaacttgcgcaagttggccggtagtaaaaactgaagcacaaacgtttcttggacggtgg 33985437  T
Q  170 tcaatg 175  Q
    ||||||    
T  33985436 tcaatg 33985431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 37694591 - 37694493
Alignment:
Q  79 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 176  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||| | |||||| | ||||| ||||||||||    
T  37694591 ttaagtcacgcaccactgagcctctacgcgagttaacctgcgcaagttggccggtggtaaaaactgaagcacagacgtttttgggacgatggtcaatgc 37694493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 52032771 - 52032683
Alignment:
Q  89 caccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 176  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| | |||||||||| |||||    
T  52032771 caccactgagcctatgcgcgagttaacttgcgcaaattggccggtggtaaaaactaaagcacaaacgtttttgggacggtggtaaatgc 52032683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 34939558 - 34939480
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacg 88  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||    
T  34939558 gaattttgctcttcactcagcacatttcgctcgcgccctgcatgattttcaaatatgaccctgcgtgagttaagtcacg 34939480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 45043088 - 45042990
Alignment:
Q  79 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 176  Q
    |||||||||||||||||||||||||  | ||||||||||||| ||||||| |||||||||||||| ||||| |||||||| | |||||||||| |||||    
T  45043088 ttaagtcacgcaccactgagcctctatgtgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggtgaatgc 45042990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 54809088 - 54808986
Alignment:
Q  74 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtca 172  Q
    |||| ||||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || || |||| |||| |||||||| ||||    
T  54809088 gtgacttaagtcgcacaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaaccacaaacatttcttggacggtagtca 54808989  T
Q  173 atg 175  Q
    |||    
T  54808988 atg 54808986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 54703637 - 54703726
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    ||||||| ||||||| |||||||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||    
T  54703637 tgcgtgacttaagtcgcgcaccactgggcctatgtgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagaacaaacgtttct 54703726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 34939434 - 34939342
Alignment:
Q  83 gtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaat 174  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||  |||| ||||||||| || ||||||||||||    
T  34939434 gtcacgcaacactgagcctatgcgcgagttaacttccgcaagttggccggtggtaaaaactgcagcacaaacgtttcttgaacggtggtcaat 34939342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 51242828 - 51242915
Alignment:
Q  89 caccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggtcaatg 175  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||| ||||| ||| |||||||| |||||||    
T  51242828 caccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtcaaaactgaagcataaacgttttttggacggtagtcaatg 51242915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 42118863 - 42118941
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 89  Q
    ||||||||||||||| | |||||||| || |||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  42118863 gaattttgctcttcatccagcacatt-cgttcgcgccctgaatgtttttcaaatataaccctgcgtgagttaagtcacgc 42118941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 54703525 - 54703605
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||||||||||  |||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||| |||||    
T  54703525 gaattctgctcttcaccctgcacattttgctcgcgccctgcacttttttcaaatataaccctgcgtgagttaagtaacgca 54703605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 32935629 - 32935747
Alignment:
Q  16 tgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaac 115  Q
    |||||||| || |||||||||||||||| |||||||    |||| |||||| || ||||| |||||||||||||||||||  |||| |||||||||||||    
T  32935629 tgctcttcccccagcacatttcgctcgcaccctgcagccattcctaatatacccctgcgttagttaagtcacgcaccact-tgcctatgcgcgagttaac 32935727  T
Q  116 ttgcgcaagttggacggtgg 135  Q
    |  |||| ||||| ||||||    
T  32935728 tcacgcacgttggccggtgg 32935747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 45043190 - 45043111
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 89  Q
    |||||||| | |||||| ||||||||||||||||||| ||||||||||| |||||||| | | || ||||||||||||||    
T  45043190 gaattttgtttttcacccagcacatttcgctcgcgccttgcatgttttctaaatataatcctacgcgagttaagtcacgc 45043111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 52789282 - 52789359
Alignment:
Q  9 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtca 86  Q
    |||||| |||| |||||| || |||||||||||||||||||||  ||||  |||||| | ||||||||||||||||||    
T  52789282 ggaattctgcttttcacccagaacatttcgctcgcgccctgcacattttttaaatatgatcttgcgtgagttaagtca 52789359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 36047091 - 36047011
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||||||||||  |||||||| ||| ||||||||||  |||| | ||||||||| |||||||||||||| |||||    
T  36047091 gaattctgctcttcaccctgcacattttgcttgcgccctgcacttttttcgaatataaccctgcgtgagttaagtaacgca 36047011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 37694711 - 37694631
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||||||||||| | || ||||||   | |||||||||  ||||||||||||||||| || ||||||||||||||||||||    
T  37694711 gaattttgctctccccccagcacaaaacactcgcgcccaccatgttttccaaatatacccctgcgtgagttaagtcacgca 37694631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 9243006 - 9242920
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 158  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||  |||||||||| |||| || | |||| ||| | ||||||||    
T  9243006 tgcgtgacttaagtcacgcaccactgagcct-tccgcgagttaactcacgcaagttggccggtagtcagaactgaagaacaaacgttt 9242920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 33983756 - 33983797
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  33983756 gaattttgctcttcacccagcacatttcgctcgcaccctgca 33983797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 43501716 - 43501757
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  43501716 gaattttgctcttcacccagcacatttcgctcgcaccctgca 43501757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 52790507 - 52790466
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  52790507 gaattttgctcttcacccagcacatttcgctcgcaccctgca 52790466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 52032882 - 52032802
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||||||||||  ||||||||  |||||||| ||||  |||| ||||| | ||| ||||||||||||||||||||    
T  52032882 gaattctgctcttcaccctgcacattttactcgcgccttgcacttttttcaaatttgaccctgcgtgagttaagtcacgca 52032802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 27761217 - 27761173
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaact 116  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  27761217 tgcgtgacttaagtcacgcaccact-agcctatgcgcgagttaact 27761173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 33985649 - 33985568
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcg-ccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| ||||||||| | ||||||||| ||||||  |||||||  |||| |||||||| | ||| |||||||||||||||||    
T  33985649 gaattctgctcttcatccagcacattttgctcgcatccctgcacatttttcaaatatacctttgtgtgagttaagtcacgca 33985568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 38131326 - 38131367
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    |||| |||||||||||| ||||||||| ||||||||||||||    
T  38131326 gaatgttgctcttcacccagcacattttgctcgcgccctgca 38131367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 49065638 - 49065594
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaact 116  Q
    ||||||| |||||||||||||||||| |||| ||||||||||||||    
T  49065638 tgcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaact 49065594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 2777870 - 2777942
Alignment:
Q  18 ctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||||| || ||||||||| ||||||||||  |||  ||||||  |||| |||| ||||||||||||||||||    
T  2777870 ctcttctcccagcacattttgctcgcgcccaacataatttccagttatacccttacgtgagttaagtcacgca 2777942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 49150483 - 49150650
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcga 109  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||     
T  49150483 gaattttgctcttcacccagcatatttcgctcgcgtcctgcatgttttccaaatataaccctgtgtgagttaagtcacgcaccactgagcctctgcgcgc 49150582  T
Q  110 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 176  Q
    ||| |||||||||| |||| |||||||||||||| ||||| |||||||||| ||||||||| ||||||    
T  49150583 gttgacttgcgcaaattggccggtggtaaaaacttaagcataaacgtttctgggacggtggccaatgc 49150650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 15399008 - 15399175
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcga 109  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||| ||||||||||    
T  15399008 gaattttgctcttcacccagcacatttcgctcacgccctgcatgtttttcaaatataatcctgcgtgagttaagtcacgcaccaccgagtctctgcgcga 15399107  T
Q  110 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtcaatgc 176  Q
    |||||||| ||||||||||| ||||||||||| | ||||| |||||||| | ||||||| ||||||||    
T  15399108 gttaacttacgcaagttggatggtggtaaaaattgaagcacaaacgtttatgggacggttgtcaatgc 15399175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 33686632 - 33686526
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 168  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||| ||||||||     
T  33686632 ttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaatgtttcttggacggta 33686533  T
Q  169 gtcaatg 175  Q
    |||||||    
T  33686532 gtcaatg 33686526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 7014859 - 7014756
Alignment:
Q  73 cgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtc 171  Q
    ||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||    
T  7014859 cgtgacttaagtcacgcaccactaagcatatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtc 7014760  T
Q  172 aatg 175  Q
    ||||    
T  7014759 aatg 7014756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 43138736 - 43138631
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||| ||||| ||||||||| |||||||| |    
T  43138736 tgcgtgatttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaaattggccggtgataaaaactgaagcacaaacgtttcttggacggtag 43138637  T
Q  170 tcaatg 175  Q
    ||||||    
T  43138636 tcaatg 43138631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 1671405 - 1671308
Alignment:
Q  79 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggtcaatgc 176  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||||| ||||||| |||||| ||| | |||||||| |||||||||||||||||    
T  1671405 ttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggtcaaaactgaagaacaaacgtttttggacggtggtcaatgc 1671308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 12926715 - 12926795
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||||||||||||||||  |||||||| |||| |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  12926715 gaattttgctcttcaccctgcacattttgctcccgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 12926795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 12926835 - 12926916
Alignment:
Q  79 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||| ||||| ||||||||||    
T  12926835 ttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggctaatggtaaaaactgaagcacaaacgtttct 12926916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 10308361 - 10308441
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||||||||||  |||||||| ||||||||||||||  ||||| |||||||||| ||||||||||||||||||||    
T  10308361 gaattctgctcttcaccctgcacattttgctcgcgccctgcacattttctaaatataaccctgcgtgagttaagtcacgca 10308441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 22605440 - 22605540
Alignment:
Q  73 cgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggtc 171  Q
    ||||| ||||||||||||||| ||||||||| | |||||||||||||||||||| | |||||||||||||| ||| | | ||| ||| ||||||||||||    
T  22605440 cgtgacttaagtcacgcaccattgagcctctacacgagttaacttgcgcaagttagccggtggtaaaaactgaagaatatacgttttttggacggtggtc 22605539  T
Q  172 a 172  Q
    |    
T  22605540 a 22605540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 10308476 - 10308561
Alignment:
Q  74 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    |||| |||||||||||||||||| || | |||| ||||||||||||||||||||| |||||||||| ||| ||||| |||| |||||    
T  10308476 gtgacttaagtcacgcaccactg-gcatgtgcgtgagttaacttgcgcaagttggccggtggtaaacactgaagcacaaacatttct 10308561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 49597193 - 49597293
Alignment:
Q  72 gcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggt 170  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||  |||| ||||| ||||||| | |||||||| | ||||| ||| |||||||||||    
T  49597193 gcgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaacaaacgatttttggacggtggt 49597291  T
Q  171 ca 172  Q
    ||    
T  49597292 ca 49597293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 33296425 - 33296505
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| ||||||||| | ||||||||| ||||||||||| ||| | |||||||| || |||||||| |||||| |||||||    
T  33296425 gaattctgctcttcatccagcacattttgctcgcgccctacatctgttccaaatttacccttgcgttagttaactcacgca 33296505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 33686743 - 33686663
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| ||||||||| |  |||||||| ||||||| ||||||  ||||||||||||||   ||||||||||||||||||||    
T  33686743 gaattctgctcttcatcctgcacattttgctcgcgtcctgcactttttccaaatataattctgcgtgagttaagtcacgca 33686663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 41871735 - 41871833
Alignment:
Q  74 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggtca 172  Q
    |||| |||||| ||||||||||| |||| ||||||||||||||  |||| ||||| ||||||||| |||| ||| | ||||| ||| |||||||||||||    
T  41871735 gtgacttaagtaacgcaccactg-gcctatgcgcgagttaactcacgcacgttggccggtggtaagaactgaagaacaaacgttttttggacggtggtca 41871833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 43138849 - 43138774
Alignment:
Q  9 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagt 84  Q
    |||||| ||||||||||| |||||||||  |||| ||||||||  ||||| |||||||| | ||||||||||||||    
T  43138849 ggaattctgctcttcacctagcacattttactcgtgccctgcactttttctaaatataatcatgcgtgagttaagt 43138774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 30858515 - 30858583
Alignment:
Q  90 accactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 158  Q
    |||| ||||||||| |||||||||||| ||||||||||| ||||||| ||| || ||| | ||||||||    
T  30858515 accattgagcctctacgcgagttaactcgcgcaagttggccggtggtcaaagctgaagaacaaacgttt 30858583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 4199148 - 4199105
Alignment:
Q  8 cggaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||    
T  4199148 cggaattttgctcttcacccaacacattttgctcgcgccctgca 4199105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 49000892 - 49000853
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctg 49  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  49000892 gaattttgctcttcacccagcacattttgctcgcgccctg 49000853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 20447164 - 20447230
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 136  Q
    |||||||| |||||| ||||||| ||||||||  |||||||||||||  ||| |||||| |||||||    
T  20447164 ttgcgtgacttaagttacgcacccctgagccttcgcgcgagttaactcacgctagttggtcggtggt 20447230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 20532927 - 20532993
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 136  Q
    |||||||| |||||| ||||||| ||||||||  |||||||||||||  ||| |||||| |||||||    
T  20532927 ttgcgtgacttaagttacgcacccctgagccttcgcgcgagttaactcacgctagttggtcggtggt 20532993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 23941468 - 23941509
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||| |||||||| || ||||||||||||||||||||||||    
T  23941468 gaattctgctcttctcccagcacatttcgctcgcgccctgca 23941509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 39222590 - 39222631
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    |||||||||||||||||  |||||||| ||||||||||||||    
T  39222590 gaattttgctcttcaccctgcacattttgctcgcgccctgca 39222631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 43514966 - 43514925
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||    
T  43514966 gaattatgctcttcacccagcacttttcgctcgcgccctgca 43514925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 12068092 - 12068020
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaa 82  Q
    ||||| |||||| |||| ||||||||| ||||||||||||||    |||||||| || |||||||| ||||||    
T  12068092 gaattatgctctccacccagcacattttgctcgcgccctgcagccgttccaaatttatccttgcgttagttaa 12068020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 22605326 - 22605406
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||||||| || ||||||   | |||||||||  ||||||||| |||||||||| | ||||||||||||| ||||    
T  22605326 gaattctgctcttcccccagcacaaaacactcgcgcccaacatgttttctaaatataaccctacgtgagttaagtcgcgca 22605406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 41871626 - 41871658
Alignment:
Q  16 tgctcttcaccgagcacatttcgctcgcgccct 48  Q
    ||||||||||||||||||||| |||||||||||    
T  41871626 tgctcttcaccgagcacattttgctcgcgccct 41871658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 47983681 - 47983756
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaag 147  Q
    |||||||||||||||||  ||||||| || | ||||||||||||||  |||| ||||| ||||||| | ||||||||    
T  47983681 tgcgtgagttaagtcacttaccactg-gcatgtgcgcgagttaactgacgcacgttggccggtggtcagaactaaag 47983756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 7662352 - 7662202
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcga 109  Q
    ||||| ||||||||| |  | ||||||  |||||||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  7662352 gaattctgctcttcatcctgaacattttactcgcgccctgcacatttttcaaatatgaccttgcgtgagttaagtcacgcaccactgagcctatgcgcga 7662253  T
Q  110 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
     |||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  7662252 tttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttct 7662202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 1081975 - 1081870
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||| |||||||| |    
T  1081975 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggtag 1081876  T
Q  170 tcaatg 175  Q
    ||||||    
T  1081875 tcaatg 1081870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 18172222 - 18172117
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  18172222 tgcgtgacttaagtcacgcaccactgagcttatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtag 18172123  T
Q  170 tcaatg 175  Q
    ||||||    
T  18172122 tcaatg 18172117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 12144045 - 12144151
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 168  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |||||||| ||||| ||||||||| ||||||||     
T  12144045 ttgcgtgacttaagtcacgcaccactgagcctatgcacgagttaacttgcgcaagttggtcagtgttaaaaactgaagcacaaacgtttcttggacggta 12144144  T
Q  169 gtcaatg 175  Q
    |||||||    
T  12144145 gtcaatg 12144151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 2786732 - 2786810
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagca 149  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  2786732 tgcgtgacttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagca 2786810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 34954048 - 34954153
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| |||||||  |||||||||||||| ||||||||||||||||| ||||||||  ||||||||||||| ||||| ||||||||| |||||||| |    
T  34954048 tgcgtgacttaagtcgtgcaccactgagcctatgcgcgagttaacttgcacaagttggctggtggtaaaaactgaagcacaaacgtttcttggacggtag 34954147  T
Q  170 tcaatg 175  Q
    ||||||    
T  34954148 tcaatg 34954153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 43147513 - 43147441
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaact 143  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||    
T  43147513 tgcgtgacttaagtcacgcaccactgagcctctacacgagttaactcgcgcaagttggccggtggtaaaaact 43147441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 40034081 - 40033982
Alignment:
Q  79 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggta-aaaactaaagcaaaaacg-tttctggacggtggtcaatgc 176  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||| ||| | ||| | ||| |||||||||||||||||    
T  40034081 ttaagtcacgcaccactgagcctctacgcgagttaactcgcgcaagttggtcggtggtaaaaaactgaagaacaaatgttttttggacggtggtcaatgc 40033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 18172334 - 18172254
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||||||||||||||||  |||||||| | ||||||||||||  ||||  |||||| ||||||||||||||||||||||||    
T  18172334 gaattttgctcttcaccttgcacattttgttcgcgccctgcacattttttaaatatgaccttgcgtgagttaagtcacgca 18172254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 24531109 - 24531047
Alignment:
Q  28 agcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||||||| ||||||| || ||||| |||||||||||| || ||||||||||||||||||||    
T  24531109 agcacattttgctcgcgtccagcatgatttccaaatatacccctgcgtgagttaagtcacgca 24531047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 14804430 - 14804362
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgag 78  Q
    ||||||||||||||||| |||||||| |||| |||| |  ||||||||| |||||||||| ||||||||    
T  14804430 gaattttgctcttcacccagcacattccgcttgcgctcaacatgttttctaaatataaccctgcgtgag 14804362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 2786628 - 2786700
Alignment:
Q  18 ctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||||||||  |||||||| |||||||| |||||   |||||||||| |||| ||||||||||||||| ||||    
T  2786628 ctcttcaccctgcacattttgctcgcgctctgcactctttccaaatacaaccctgcgtgagttaagtcgcgca 2786700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 10532795 - 10532856
Alignment:
Q  74 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 136  Q
    ||||||||||||| ||||||||| || | ||||||||||||||  |||||||||| |||||||    
T  10532795 gtgagttaagtcatgcaccactg-gcttgtgcgcgagttaactcacgcaagttggccggtggt 10532856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 15106494 - 15106416
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacg 88  Q
    ||||||||||||||||| |||||||||||||| | |||||||   || || || ||| || ||||||| ||||||||||    
T  15106494 gaattttgctcttcacccagcacatttcgctcccaccctgcagccttacccaaaatacccatgcgtgacttaagtcacg 15106416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 1082086 - 1082007
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||| ||||||  |||||||| | ||||||||||||  |||||||||| | ||| || |||||||||||||||||    
T  1082086 gaattctgctattcaccctgcacattttg-tcgcgccctgcactttttccaaatttgaccctgtgtgagttaagtcacgca 1082007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 4759295 - 4759190
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggt 170  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |    
T  4759295 tgcgtgacttaagtcatgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactgaagcacaaacgtttctggacggtgtt 4759196  T
Q  171 caatgc 176  Q
    ||||||    
T  4759195 caatgc 4759190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 1217794 - 1217897
Alignment:
Q  74 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtca 172  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| || || |||||||||| ||||||||||||    
T  1217794 gtgacttaagtcacgcaccaccgagcctctgcgcgagttgacttgcgcaagttggccggtggtaaaaactgaaacacaaacgtttctgggacggtggtca 1217893  T
Q  173 atgc 176  Q
    ||||    
T  1217894 atgc 1217897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 9039664 - 9039754
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  9039664 ttgcgtgacttaagtcacacaccactgaacctctgcgcgagttaacttgcgcaagttggccggtggtaaaaactacagcacaaacgtttct 9039754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 1217679 - 1217757
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacg 88  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  1217679 gaattttgctcttcactcagcacatttcgctcgcgccctgcatgttttccaaatataaccctgtgtgagttaagtcacg 1217757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 42182548 - 42182625
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcac 87  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  42182548 gaattttgctcttcacccaacacatttcgctcgcgccctgcatgttttccaaatataatcctgcgtgagttaagtcac 42182625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 23810972 - 23810900
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaa 82  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23810972 gaatttttctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccctgcgtgagttaa 23810900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 5913203 - 5913112
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctgg 162  Q
    ||||||| ||||||||| ||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||    
T  5913203 tgcgtgacttaagtcacacaccattgagcctctgtgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacgtttctgg 5913112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 42182669 - 42182747
Alignment:
Q  80 taagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 158  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  42182669 taagtcacgcaccactgagtctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgttt 42182747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 4322708 - 4322785
Alignment:
Q  83 gtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||| ||| ||||||    
T  4322708 gtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaatgtttct 4322785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 4759407 - 4759327
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||||||||||||||| ||||||||| ||||||||||  |||||||| ||||||||||| ||||| ||||||||||||||    
T  4759407 gaattttgctcttcacctagcacattttgctcgcgcccaacatgtttttcaaatataaccctgcgtaagttaagtcacgca 4759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 2766982 - 2766844
Alignment:
Q  39 ctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaa 138  Q
    |||||||||  |||| |||||||||||| || |||||||||| ||||||  |||||||| ||||||| |||||||||   |||||||||| | ||||| |    
T  2766982 ctcgcgcccaacatgatttccaaatatacccatgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcacgcaagttggccagtggtca 2766883  T
Q  139 aaactaaagcaaaaacg-tttctggacggtggtcaatgc 176  Q
    ||||| ||| | ||||| ||| |||||||||||||||||    
T  2766882 aaactgaagaacaaacgttttttggacggtggtcaatgc 2766844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 35161617 - 35161694
Alignment:
Q  82 agtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||| |||||| ||||| ||||||||||    
T  35161617 agtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggt-aaaactgaagcacaaacgtttct 35161694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 15743388 - 15743308
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||||||||||  |||||||| ||||||||||||||  |||||||||||||| | || |||||||||||||||||    
T  15743388 gaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataatcctgtgtgagttaagtcacgca 15743308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 5914045 - 5913980
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgt 75  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||| |||||    
T  5914045 gaatttttctcttcacccagcacatttcgcttgcgccctgcatgtttttcaaatatcaccctgcgt 5913980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 9039553 - 9039633
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||||||||| |||| | ||||||||||||||||| |||| |||||||  |||||||| | ||||||||||||| ||||||    
T  9039553 gaattttgcttttcatccagcacatttcgctcgcgtcctgaatgttttttaaatataatcgtgcgtgagttaagccacgca 9039633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 15739755 - 15739705
Alignment:
Q  110 gttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  15739755 gttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttct 15739705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 23542943 - 23542901
Alignment:
Q  9 ggaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  23542943 ggaattttgctcttcacccagcacatttcgctcgcgccctgca 23542901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 23810912 - 23810856
Alignment:
Q  102 ctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc 159  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  23810912 ctgcgtgagttaacttgcgcaagttggacggtggt-aaaactgaagcacaaacgtttc 23810856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 35161503 - 35161571
Alignment:
Q  18 ctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtca 86  Q
    |||||||||  |||||||| ||||||||||||||  ||||  |||||||||| ||||||||||||||||    
T  35161503 ctcttcaccctgcacattttgctcgcgccctgcactttttttaaatataaccatgcgtgagttaagtca 35161571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 15743276 - 15743234
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagtta 113  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  15743276 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagtta 15743234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 5015367 - 5015447
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcac 91  Q
    |||||||||||||| ||  |||||||| |||||||| |||||  | ||||||||||| |||||||| |||||| | ||||||    
T  5015367 gaattttgctcttcgcct-gcacattttgctcgcgctctgcaactgttccaaatatacccttgcgttagttaactaacgcac 5015447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 43693764 - 43693723
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    |||||||||||||||||  |||||||| ||||||||||||||    
T  43693764 gaattttgctcttcaccctgcacattttgctcgcgccctgca 43693723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 37226988 - 37227028
Alignment:
Q  11 aattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    |||| ||||||||||| ||||||||| ||||||||||||||    
T  37226988 aattctgctcttcacccagcacattttgctcgcgccctgca 37227028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 2447532 - 2447699
Alignment:
Q  9 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcg 108  Q
    |||||| |||||||||||  |||||||| ||||| ||||||||  |||| ||||| | ||| || ||||||||||||||||| |||| ||||| ||||||    
T  2447532 ggaattctgctcttcaccttgcacattttgctcgtgccctgcacttttttcaaatttgaccctgtgtgagttaagtcacgcaacactaagcctatgcgcg 2447631  T
Q  109 agttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 175  Q
    |||||||| ||||||||||| | |||||||||||| ||||| ||||||||| |||||||| |||||||    
T  2447632 agttaactggcgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 2447699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 49303208 - 49303314
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 169  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| |||||||      
T  49303208 tgcgtgacttaagtcacacaccactgagcctctgcgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacgtttctaggacggtaa 49303307  T
Q  170 tcaatgc 176  Q
    |||||||    
T  49303308 tcaatgc 49303314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 49501619 - 49501514
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  49501619 tgcgtgacttaagtcacgcaccactgagcttatgcgtgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtag 49501520  T
Q  170 tcaatg 175  Q
    ||||||    
T  49501519 tcaatg 49501514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 41649949 - 41650051
Alignment:
Q  74 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtca 172  Q
    |||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||| ||| ||||| |||||||| ||||    
T  41649949 gtgacttaagtcacgcactactgagcctatgcgcgagttaatttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttcttggacggtagtca 41650048  T
Q  173 atg 175  Q
    |||    
T  41650049 atg 41650051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 49742186 - 49742097
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||  |||||||| ||||| ||||| ||||||||||    
T  49742186 tgcgtgacttaagtcacgcaccactgagtctatgcgcgagttaacttgcgcaagttgcccggtggtagaaactgaagcacaaacgtttct 49742097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 23029646 - 23029752
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 168  Q
    |||||||| |||||||| |||||||||||||| |||| |||||||||||| | |||||| |||||||| ||||| || || ||||||||| ||||||||     
T  23029646 ttgcgtgacttaagtcatgcaccactgagcctatgcgggagttaacttgccctagttggccggtggtagaaactgaaacagaaacgtttcttggacggta 23029745  T
Q  169 gtcaatg 175  Q
    |||||||    
T  23029746 gtcaatg 23029752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 49501731 - 49501654
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcac 87  Q
    ||||| |||||||||||  | |||||| | ||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  49501731 gaattctgctcttcaccctgtacattttgttcgcgtcctgcattttttccaaatataaccctgcgtgagttaagtcac 49501654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 37282923 - 37282843
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| ||||||||||| ||||||| || ||||||||||||| |  ||||||||||  |||||||  ||||||||||||||    
T  37282923 gaattctgctcttcacccagcacatatcactcgcgccctgcaagcattccaaatatgcccttgcgctagttaagtcacgca 37282843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 25574829 - 25574927
Alignment:
Q  74 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttctggacggtggtca 172  Q
    |||| |||||||||||||||||| |||| ||||||||||||||  |||| ||||| ||||||| | |||| ||| | ||||| ||| |||||||||||||    
T  25574829 gtgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttggacggtggtca 25574927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 47560577 - 47560497
Alignment:
Q  9 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 89  Q
    ||||||||| ||||| |  ||||||||| |||||||||| ||||  ||||||| ||||  |||| ||||||||||||||||    
T  47560577 ggaattttgttcttctctcagcacattttgctcgcgcccagcataatttccaattatacacttgtgtgagttaagtcacgc 47560497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 39415336 - 39415446
Alignment:
Q  63 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttct 160  Q
    |||||||| ||||||| |||||||||||||||||| |||| |||| |||||||||  |||| ||||| || |||| | |||| ||| | ||||| ||| |    
T  39415336 tataacctctgcgtgacttaagtcacgcaccactg-gcctgtgcgtgagttaactcacgcacgttggccgatggttagaactgaagaacaaacgtttttt 39415434  T
Q  161 ggacggtggtca 172  Q
    ||||||||||||    
T  39415435 ggacggtggtca 39415446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 48086833 - 48086906
Alignment:
Q  63 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 136  Q
    |||||||| ||| ||| |||||||||||||||||| |||| ||||||||||||||  |||| ||||| |||||||    
T  48086833 tataacctctgcatgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcacgttggccggtggt 48086906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 5290787 - 5290682
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggt 170  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| || || | ||||||||||||||||||    
T  5290787 tgcgtgacttaagtcacgcaccactgagcctatgcgtgagttaactcgcgcaagttggacggtggtaaaaactgaaacacagacgtttctggacggtggt 5290688  T
Q  171 caatgc 176  Q
    ||||||    
T  5290687 caatgc 5290682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 4616725 - 4616619
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 169  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||    
T  4616725 tgcgtgacttaagtcacgccccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtgg 4616626  T
Q  170 tcaatgc 176  Q
    |||||||    
T  4616625 tcaatgc 4616619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 26257863 - 26257757
Alignment:
Q  71 tgcgtgagttaagtcacgca-ccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtgg 169  Q
    ||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||    
T  26257863 tgcgtgacttaagtcacacatccactgagcctctgcgcaagttaacttgcgcaagttagacggtggtaaaaactgaagcacaaacgtttctggatggtgg 26257764  T
Q  170 tcaatgc 176  Q
    |||||||    
T  26257763 tcaatgc 26257757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 32737959 - 32737854
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||| ||||||||| |||||||| |    
T  32737959 tgcgtgacttaagtcacgcaccactgagcctctgcgtgagttaacttgcgcaagttggccgatggtaaaaactgaagcacaaacgtttcttggacggtag 32737860  T
Q  170 tcaatg 175  Q
    ||||||    
T  32737859 tcaatg 32737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 41192467 - 41192365
Alignment:
Q  74 gtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtca 172  Q
    |||| ||||||||| ||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||    
T  41192467 gtgacttaagtcacacaccactgagcctatgtgcgagttaacttgcgcaagttggccggtggtaaaaactaaagcacaaacgtttcttggacggtagtca 41192368  T
Q  173 atg 175  Q
    |||    
T  41192367 atg 41192365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 5814614 - 5814517
Alignment:
Q  79 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 175  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  5814614 ttaagtcacgcactactgagcctatacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 5814517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 34619988 - 34619883
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||| |||||||| |    
T  34619988 tgcgtgacttaagtcacgcactactgagcctatgcgcgagttaacttgcacaagttggccggtgataaaaactgaagcacaaacgtttcttggacggtag 34619889  T
Q  170 tcaatg 175  Q
    ||||||    
T  34619888 tcaatg 34619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 4616836 - 4616758
Alignment:
Q  11 aattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 89  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  4616836 aattttgcttttcacccagcacatttcgctcgcgccctgcatgtttttcaaatataaccatgtgtgagttaagtcacgc 4616758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 6728635 - 6728723
Alignment:
Q  88 gcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 175  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||| |||||||| |||||||    
T  6728635 gcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacagacgtttcttggacggtagtcaatg 6728723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 34620083 - 34619999
Alignment:
Q  8 cggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcacc 92  Q
    ||||||| |||||||||||  |||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  34620083 cggaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcacc 34619999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 1887918 - 1888023
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| ||||||||||| | ||||| | | |||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||| |||||||| |    
T  1887918 tgcgtgacttaagtcacgcccaactgatcatatgcgcgagttaacttgcgcaagttgcccggtggtaaaaactgaagcacaaacgtttcttggacggtag 1888017  T
Q  170 tcaatg 175  Q
    ||||||    
T  1888018 tcaatg 1888023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 21083768 - 21083872
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| |||||||||  || ||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||| ||||||||| |||||||| |    
T  21083768 tgcgtgacttaagtcacttacaactgagcctctgcgcaagttaacttgcgcaagttggccggtggt-aaaactgaagcacaaacgtttcttggacggtag 21083866  T
Q  170 tcaatg 175  Q
    ||||||    
T  21083867 tcaatg 21083872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 2195246 - 2195149
Alignment:
Q  79 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttctggacggtggtcaatgc 176  Q
    ||||||| ||||||||||| | ||| | |||||||||| ||||||||| | || ||||||||||||||| | |||||||| |||||||||||||||||    
T  2195246 ttaagtctcgcaccactgatcatctacccgagttaactcgcgcaagttagccgatggtaaaaactaaagaacaaacgtttttggacggtggtcaatgc 2195149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 41192582 - 41192502
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||||||||||  |||||||| | ||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  41192582 gaattctgctcttcaccctgcacattttgttcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 41192502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 5290897 - 5290820
Alignment:
Q  11 aattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgc 89  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||| | ||||||||| |||||| ||||||||||||    
T  5290897 aattttgctcttcatccagcacatttcgctcgcgccgtgcatgtttttcgaatataacc-tgcgtgggttaagtcacgc 5290820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 37057199 - 37057305
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 169  Q
    ||||||| ||||||||||||||||| || || | |||||||||||||  ||||||| |  ||||||||||||| ||||| |||||||| | |||||||||    
T  37057199 tgcgtgacttaagtcacgcaccactaagtctttacgcgagttaacttatgcaagttagttggtggtaaaaactgaagcacaaacgtttttgggacggtgg 37057298  T
Q  170 tcaatgc 176  Q
    |||||||    
T  37057299 tcaatgc 37057305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 6728507 - 6728586
Alignment:
Q  11 aattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||||||||||||||| | ||||||| ||| ||| ||||||| |||||||||||||||| ||| |||||||||| |||||    
T  6728507 aattttgctcttcacccatcacattttgcttgcgtcctgcattttttccaaatataaccctgcttgagttaagtaacgca 6728586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 32738071 - 32737994
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcac 87  Q
    ||||||||||||||||| ||  |||||||||||||||||||| |  ||||||||||  |||||||| |||||||||||    
T  32738071 gaattttgctcttcacccagttcatttcgctcgcgccctgcaagccttccaaatatgcccttgcgttagttaagtcac 32737994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 1887814 - 1887886
Alignment:
Q  18 ctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||||||| | ||||||||||||| ||| ||||  |||| ||||||| | ||||||||||||||||||||||    
T  1887814 ctcttcacccaacacatttcgctcgagccttgcacatttttcaaatatgatcttgcgtgagttaagtcacgca 1887886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 29132834 - 29132754
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    |||| |||||  || ||||| ||||||||||||||    
T  29132834 gaattttgctcttcacccagcacatttcgctcgcgtcctgcagccattcctaatatgcccctgcgttagttaagtcacgca 29132754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 26257939 - 26257886
Alignment:
Q  31 acatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagt 84  Q
    |||||||||||||| | ||||| |||||||||||||||| | ||||||||||||    
T  26257939 acatttcgctcgcgtcttgcatattttccaaatataaccatacgtgagttaagt 26257886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 5814703 - 5814655
Alignment:
Q  42 gcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  5814703 gcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgca 5814655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 37891765 - 37891809
Alignment:
Q  72 gcgtgagttaagtcacgcaccactgagcctctgcgcgagttaact 116  Q
    |||||| |||||||||||||||||||||||  |||||||||||||    
T  37891765 gcgtgacttaagtcacgcaccactgagccttagcgcgagttaact 37891809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 29908493 - 29908603
Alignment:
Q  63 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacg-tttct 160  Q
    |||||||| ||||||| ||||||||||| |||||| |||| ||||||||||||||   ||| ||||| ||||||| | |||| ||| | ||||| ||| |    
T  29908493 tataacctctgcgtgacttaagtcacgcgccactg-gcctatgcgcgagttaactcatgcacgttggccggtggttagaactgaagaacaaacgtttttt 29908591  T
Q  161 ggacggtggtca 172  Q
    ||||||||||||    
T  29908592 ggacggtggtca 29908603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 12874244 - 12874308
Alignment:
Q  73 cgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaa 138  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||  ||||| |||  |||||||||    
T  12874244 cgtgacttaagtcacgcaccactga-cctatgcgcgagttaactcacgcaacttgagcggtggtaa 12874308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 19380332 - 19380291
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    |||||||||||| |||| ||||||||| ||||||||||||||    
T  19380332 gaattttgctctccacccagcacattttgctcgcgccctgca 19380291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 21083679 - 21083736
Alignment:
Q  33 atttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||| ||| ||||||| ||  |||| ||||||||||| ||||||||||||||||||||    
T  21083679 attttgcttgcgccctacacatttttcaaatataaccctgcgtgagttaagtcacgca 21083736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 28030431 - 28030467
Alignment:
Q  15 ttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  28030431 ttgctcttcacccagcacttttcgctcgcgccctgca 28030467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 20092 - 20198
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 168  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||| ||||||||     
T  20092 ttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaattgaagcacaaacgtttcttggacggta 20191  T
Q  169 gtcaatg 175  Q
    |||||||    
T  20192 gtcaatg 20198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 20001 - 20082
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcacc 92  Q
    ||||| |||||||||||  |||||||| ||||  ||||||||  ||||| |||||||| | |||||||||||| |||||||||    
T  20001 gaattctgctcttcaccctgcacattt-gctcatgccctgcaccttttcaaaatataaacctgcgtgagttaactcacgcacc 20082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 39283989 - 39284095
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtgg 169  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||    
T  39283989 tgcgtgacttaagtcacgcaccactgagcctctacgcgagttaatttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttttgggacggtgg 39284088  T
Q  170 tcaatgc 176  Q
    |||||||    
T  39284089 tcaatgc 39284095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 14678225 - 14678409
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataacct------------------tgcgtgagttaagtcacgcac 91  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||                  | ||||| |||||||||||||    
T  14678225 gaattttgctcttcacccatcacatttcgctcgcgccctgcatgtttttcaaatataaactcacgcacctcacaacctctacgtgacttaagtcacgcac 14678324  T
Q  92 cactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 175  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||||||||  |||| ||||||||| ||||||||||||||||    
T  14678325 cactgagcctctgtgtgagttaacttgcgcaagttggccggtggtaaaaactgcagcacaaacgtttcttggacggtggtcaatg 14678409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 4035239 - 4035150
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct 160  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||    
T  4035239 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttct 4035150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 39283876 - 39283957
Alignment:
Q  9 ggaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  39283876 ggaattttgctcttcacccagcacatttcgcttgcgccctgcatgttttcaaaatataaccatgcgtgagttaagtcacgca 39283957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 37450001 - 37450107
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtg 168  Q
    |||||||| ||||||| |||| |||||||||| ||| |||||||||||||||||||||  |||||||||||||| ||||| ||||||||| ||||||||     
T  37450001 ttgcgtgacttaagtcgcgcatcactgagcctatgcacgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggta 37450100  T
Q  169 gtcaatg 175  Q
    |||||||    
T  37450101 gtcaatg 37450107  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 3742439 - 3742352
Alignment:
Q  89 caccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtggtcaatg 175  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  3742439 caccactgagcctatgcgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 3742352  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 40144869 - 40144784
Alignment:
Q  72 gcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtt 157  Q
    |||||| |||||||||||||||||||| || || |||| ||||| |||||||||||| |||||||||||||| ||||| |||||||    
T  40144869 gcgtgacttaagtcacgcaccactgagtctatgtgcgacttaacctgcgcaagttggccggtggtaaaaactgaagcacaaacgtt 40144784  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 8260879 - 8260944
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 136  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||||| |||||||    
T  8260879 tgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggt 8260944  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 4035351 - 4035271
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||| |||||||||||  |||||||| ||||||||||| ||  |||| ||||||||||| ||||||||||||||||||||    
T  4035351 gaattctgctcttcaccctgcacattttgctcgcgccctacacttttttcaaatataaccctgcgtgagttaagtcacgca 4035271  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 30362812 - 30362750
Alignment:
Q  72 gcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtg 134  Q
    |||||| |||||||||||||||||||||||  ||||||||||||| |||| |||||| |||||    
T  30362812 gcgtgacttaagtcacgcaccactgagccttagcgcgagttaactcgcgctagttggtcggtg 30362750  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 27874122 - 27874048
Alignment:
Q  62 atataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggt 136  Q
    ||||||||| ||||||| ||||| ||||||||||||| ||| ||||||||||||||  |||| ||||| |||||||    
T  27874122 atataacctctgcgtgacttaagccacgcaccactga-cctatgcgcgagttaactcacgcacgttggccggtggt 27874048  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 14679321 - 14679280
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||||| ||||||||| |||||||||||||||| |||||||    
T  14679321 gaatttttctcttcacccagcacatttcgctcgcaccctgca 14679280  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 34354555 - 34354515
Alignment:
Q  11 aattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  34354555 aattttgctcttcccccagcacatttcgctcgcgccttgca 34354515  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 41219471 - 41219376
Alignment:
Q  63 tataacct-tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 158  Q
    |||||||| ||||||| |||||||||||| ||||| |||| ||||||||||||||  |||| |||||  |||||| | |||| ||| | ||||||||    
T  41219471 tataacctctgcgtgacttaagtcacgcatcactg-gcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttt 41219376  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 3515306 - 3515201
Alignment:
Q  70 ttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtg 168  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||  |||| |||||||| | ||||||||    
T  3515306 ttgcgtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgtagcacaaacgtttttcggacggtg 3515207  T
Q  169 gtcaat 174  Q
    ||||||    
T  3515206 gtcaat 3515201  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 11599019 - 11599124
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttc-tggacggtgg 169  Q
    ||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| |    
T  11599019 tgcgtgacttaagtcatgcaccaccgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtag 11599118  T
Q  170 tcaatg 175  Q
    ||||||    
T  11599119 tcaatg 11599124  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 30634200 - 30634096
Alignment:
Q  73 cgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgtttct-ggacggtggtc 171  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||| |||||||| | ||||||||| |    
T  30634200 cgtgacttaagtcacgcaccactgagcctctacgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggcc 30634101  T
Q  172 aatgc 176  Q
    |||||    
T  30634100 aatgc 30634096  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 30634314 - 30634234
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 90  Q
    ||||||||||||||||| |  |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  30634314 gaattttgctcttcacccaatacatttcgctcgcgccctgcacattttccaaatataaccctgcgtgagttaagtcacgca 30634234  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 11598907 - 11598984
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcac 87  Q
    |||||||||||||||||  |||||||| ||||||||||||||  |||||||||||||||| |||||||||||| ||||    
T  11598907 gaattttgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaactcac 11598984  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 3515419 - 3515359
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcg-ccctgcatgttttccaaatataacc 69  Q
    |||||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||||    
T  3515419 gaatttagctcttcaccaagcaaatttcgctcgcgtccctgcatgttttccaaatataacc 3515359  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 17398993 - 17399097
Alignment:
Q  31 acatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggac 130  Q
    |||||| |||||||||| ||||  |||| || |||| |||| | |||||||||||||||||||||| || | || |||||||||||  |||||||||| |    
T  17398993 acattttgctcgcgcccagcataatttctaattatacccttacatgagttaagtcacgcaccactg-gcatgtgtgcgagttaactcacgcaagttggcc 17399091  T
Q  131 ggtggt 136  Q
    ||||||    
T  17399092 ggtggt 17399097  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 11600056 - 11600015
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgca 51  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  11600056 gaattttgctcttcacccagcacatttcgctcgcaccctgca 11600015  T

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Target: scaffold0753 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 3998 - 4085
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 158  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||  |||||||||  ||||||| | |||| ||| | ||||||||    
T  3998 tgcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgttt 4085  T

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Target: scaffold0861 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 3924 - 3848
Alignment:
Q  10 gaattttgctcttcaccgagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtca 86  Q
    |||||||||||| |||| |||| |||||||||| |||||||| |  ||||||||||  |||||| | ||||||||||    
T  3924 gaattttgctctacacccagcatatttcgctcgtgccctgcaagcattccaaatatgcccttgcattagttaagtca 3848  T

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Target: scaffold0217 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 25598 - 25685
Alignment:
Q  71 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactaaagcaaaaacgttt 158  Q
    ||||||| ||||| |||| |||||  ||||| ||||||||||||||  |||||||||| ||||||| | |||| ||| | ||||||||    
T  25598 tgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacgttt 25685  T

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