View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8302_low_2 (Length: 241)
Name: NF8302_low_2
Description: NF8302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8302_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 832674 - 832461
Alignment:
| Q |
17 |
aaatattgatgttttacattttacaaaccacaacatttctgatggaagctgtccca-------aata---atatagaaaatatcattatctaagttacaa |
106 |
Q |
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| T |
832674 |
aaatattgatgttttacattttacaaaccacaacatttctgatggaagctgtcccagccaaggaatttacatatagaaaatatcatcatctaagttacaa |
832575 |
T |
|
| Q |
107 |
taagcataaataacaagacaatggtcaataaataattactcaacaattaataccgagaagctaattaagcagcaaagcaatcacacaatctattattata |
206 |
Q |
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| T |
832574 |
taagcataaataacaagaaaatggtcaataaataataactcaacaattaataccgacaagctaattaagcagcaaagcaatcacacaatctattattata |
832475 |
T |
|
| Q |
207 |
acaacataaacgaa |
220 |
Q |
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|||||| ||||||| |
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| T |
832474 |
acaacaaaaacgaa |
832461 |
T |
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