View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8303_high_1 (Length: 368)

Name: NF8303_high_1
Description: NF8303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8303_high_1
NF8303_high_1
[»] chr4 (2 HSPs)
chr4 (11-343)||(48567268-48567600)
chr4 (157-281)||(23440203-23440331)
[»] chr3 (2 HSPs)
chr3 (16-334)||(31424356-31424674)
chr3 (45-115)||(24712975-24713044)
[»] chr8 (2 HSPs)
chr8 (48-304)||(17819481-17819734)
chr8 (134-183)||(31503122-31503171)
[»] chr1 (2 HSPs)
chr1 (50-345)||(9613087-9613382)
chr1 (199-343)||(9081330-9081475)
[»] chr2 (3 HSPs)
chr2 (136-219)||(1946006-1946091)
chr2 (14-211)||(1945795-1945995)
chr2 (146-217)||(11199759-11199829)
[»] chr5 (2 HSPs)
chr5 (49-86)||(25657829-25657866)
chr5 (134-183)||(26367774-26367823)
[»] chr7 (1 HSPs)
chr7 (134-178)||(15126857-15126901)
[»] chr6 (1 HSPs)
chr6 (50-90)||(20500283-20500323)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 48567268 - 48567600
Alignment:
Q  11 cagagagaccggtatcagatattacataatgaatgcgtcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaac 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48567268 cagagagaccggtatcagatattacagaatgaatgcgtcgtatataggcggaacacctaaaatcaacaccataaaagacattaaacacccatcacctaac 48567367  T
Q  111 caagatctccattaacacctaaagagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatcc 210  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48567368 caagatctaccttaacacctaaagagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaactgaaaacgaaatcc 48567467  T
Q  211 ataaacccctttcgctcactgctcaccccaaaaaacatccctctaaatcagacaacctcttctcatcacctaaactgagccgtattcaaaaatgttctat 310  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48567468 ataaacccctttcgctcgctgctcaccccaaaaaacatccctctaaatcagacaacctcttctcatcacctaaactgagccgtattcaaaaatgttctat 48567567  T
Q  311 tccaacgtttagtcagcatccaccacctctcta 343  Q
    ||||||| ||||||||| |||||||||||||||    
T  48567568 tccaacgcttagtcagcttccaccacctctcta 48567600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 281
Target Start/End: Original strand, 23440203 - 23440331
Alignment:
Q  157 acttcaccacctaaatcaaacttcatcattaaacggcaacttaa--aacgaaatccataaaccccttt--cgctcactgctcaccccaaaaaacatccct 252  Q
    |||||||||||||||||||||| |||||| ||||| | ||| ||  ||||||||||||||||||  ||  | ||| |||||||||| |||  |||  |||    
T  23440203 acttcaccacctaaatcaaactccatcataaaacgaccactgaaacaacgaaatccataaaccctcttccctctcgctgctcacccaaaattacactcct 23440302  T
Q  253 ctaaatcagacaacctcttctcatcacct 281  Q
    |||||||| | |||| |||||||||||||    
T  23440303 ctaaatcaaataaccccttctcatcacct 23440331  T

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Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 31424674 - 31424356
Alignment:
Q  16 agaccggtatcagatattacataatgaatgcgtcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaaga 115  Q
    ||||| ||||||||  |||||| || ||  |||||||||||||| ||||| | ||| | |||||||||||| |||  |||||  ||||||||||||||||    
T  31424674 agaccagtatcagaggttacatgataaagacgtcgtatataggcggaacatccaaattaaacaccataaaatacacaaaacaatcatcacctaaccaaga 31424575  T
Q  116 tctccatt-aacacctaaagagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccata- 213  Q
    ||| | || |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || | | || ||||||||||||     
T  31424574 tctactttcaacacccaaa-agaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccatca-taaacagccattgaacacgaaatccatac 31424477  T
Q  214 aacccctttcgctcactgctcaccccaaaaaacatccctctaaatcagacaacctcttctcatcacctaaactgagccgtattcaaaaatgttctattcc 313  Q
    | |||| ||||||| || |||||||||||||||| ||||||||||||  ||||  ||| ||||||||| |  ||||||  || ||||||||| |||||||    
T  31424476 accccccttcgctcgctactcaccccaaaaaacacccctctaaatcaaccaacaccttatcatcaccttagttgagccacatccaaaaatgtcctattcc 31424377  T
Q  314 aacgtttagtcagcatccacc 334  Q
    |||| |||||| || ||||||    
T  31424376 aacgcttagtcggcctccacc 31424356  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 24713044 - 24712975
Alignment:
Q  45 gcgtcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaaga 115  Q
    |||||||||||||||  ||||| |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  24713044 gcgtcgtatataggcgaaacac-taaaaaaaacaccataaaagacattatacaccaatcacctaaccaaga 24712975  T

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Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 48 - 304
Target Start/End: Original strand, 17819481 - 17819734
Alignment:
Q  48 tcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctccatt-aacacctaaagagaacaacaatc 146  Q
    ||||||||| || ||||||||||||  ||| ||||||||||||| | ||||| ||||||||||||| | || | || |||||| | | |||||| ||| |    
T  17819481 tcgtatataagcggaacacctaaaaa-aactccataaaagacatcatacaccaatcacctaaccaaaacctaccttcaacacccata-agaaca-caacc 17819577  T
Q  147 accaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccataaacccctttcgctcactgctcaccccaaaaaac 246  Q
    |||||||||||||||||||||||||||||||| ||||   ||||  | ||| ||||||||||||||||||||| ||||||| |||||||||||||||||     
T  17819578 accaaaaccaacttcaccacctaaatcaaactccatcgc-aaacaaccactgaaaacgaaatccataaacccccttcgctcgctgctcaccccaaaaaaa 17819676  T
Q  247 atccctctaaatcagacaacctcttctcatcacctaaactgagccgtattcaaaaatg 304  Q
    |  ||||||||||| ||||||||||||| |||||| | ||||||| ||  ||||||||    
T  17819677 actcctctaaatcaaacaacctcttctcgtcaccttagctgagccatacccaaaaatg 17819734  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 31503122 - 31503171
Alignment:
Q  134 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatc 183  Q
    |||||||| || |||||||||||||||| |||||||||||||||| ||||    
T  31503122 gagaacaagaaccaccaaaaccaacttcgccacctaaatcaaactccatc 31503171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 345
Target Start/End: Original strand, 9613087 - 9613382
Alignment:
Q  50 gtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctccatt-aacacctaaagagaacaacaatcac 148  Q
    |||||||||| ||  ||| ||||  |||||||||||| |||  |||||||||||| |||||||||| || | || |||||| ||  |||||||  | |||    
T  9613087 gtatataggcggatgaccaaaaagaaacaccataaaatacacaaaacacccatcaactaaccaagacctaccttcaacacccaat-agaacaatgaccac 9613185  T
Q  149 caaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaact-taaaacgaaatccataaacccctttcgctcactgctcaccccaaaaaaca 247  Q
    |||| ||||||||||||||||||||||||||||||   |||  || |||  |||| ||||||||| | |||| ||||||| || |||||||||||||| |    
T  9613186 caaacccaacttcaccacctaaatcaaacttcatc-gcaaattgccactggaaaatgaaatccat-accccccttcgctcgctactcaccccaaaaaata 9613283  T
Q  248 tccctctaaat-cagacaacctcttctcatcacctaaactgagccgtattcaaaaatgttctattccaacgtttagtcagcatccaccacctctctacc 345  Q
     || | |||||  | |||||| |||||||||| |  |||||||||  || ||||||| || |||| ||||| |||||| || |||||||||||| ||||    
T  9613284 cccttataaataaaaacaaccacttctcatcatcataactgagccacatccaaaaatattttatttcaacgcttagtcggcctccaccacctctttacc 9613382  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 9081330 - 9081475
Alignment:
Q  199 aaaacgaaatccataaacccctttcgctcactgctcaccccaaaaaacatccctctaaatcagacaacctcttctcatcacctaaactgagccgtattca 298  Q
    ||||||||||||||||||||| ||| ||   |||| |||||||||| || |||||||||| | ||||||| |||||||||||| || ||||||  | ||     
T  9081330 aaaacgaaatccataaacccccttcccttgttgctaaccccaaaaaccacccctctaaataaaacaacctattctcatcaccttaattgagccacactcg 9081429  T
Q  299 aaaatgttctattccaacgtttagtcagcatcca-ccacctctcta 343  Q
    ||| ||| |||||||||   ||||||||| |||| |||||||||||    
T  9081430 aaagtgtcctattccaatacttagtcagcctccacccacctctcta 9081475  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 1946091 - 1946006
Alignment:
Q  136 gaacaacaatcaccaaaac-caacttcaccacctaaatcaaacttcatcattaaacggcaact-taaaacgaaatccataaacccc 219  Q
    ||||||||| ||||||||| | |||||||||||||||||||||| |||||| ||||||| |||  |||||||||||||||||||||    
T  1946091 gaacaacaaccaccaaaactccacttcaccacctaaatcaaactccatcataaaacggccactaaaaaacgaaatccataaacccc 1946006  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 1945795 - 1945995
Alignment:
Q  14 agagaccggtatcagatattacataatgaatgcgtcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaa 113  Q
    ||||||||||| |  | |||||| ||| |||| ||| ||||||||| ||||||| ||||  || |||||||||||||  | ||| |||||||||||||||    
T  1945795 agagaccggtaaccaagattacaaaataaatgtgtcatatataggc-gaacacccaaaagaaataccataaaagacacaatacaaccatcacctaaccaa 1945893  T
Q  114 gatctccatt-aacacctaaagagaacaacaatcaccaaaac-caacttcaccacctaaatcaaa--cttcatcattaaacggcaact-taaaacgaaat 208  Q
     | || | || |||||  |||  ||||||||| ||||||||| | ||||||||||||||||||||  || |||||| ||||||| |||  ||||||||||    
T  1945894 aacctactttcaacactcaaac-gaacaacaaccaccaaaactccacttcaccacctaaatcaaactctccatcataaaacggccactaaaaaacgaaat 1945992  T
Q  209 cca 211  Q
    |||    
T  1945993 cca 1945995  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 11199759 - 11199829
Alignment:
Q  146 caccaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccataaacc 217  Q
    ||||||||||||||||||| ||||||||||||| ||||   |||| || ||| ||||| |||||||||||||    
T  11199759 caccaaaaccaacttcaccgcctaaatcaaactccatcgcgaaac-gccactaaaaacaaaatccataaacc 11199829  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 25657829 - 25657866
Alignment:
Q  49 cgtatataggcagaacacctaaaatcaacaccataaaa 86  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25657829 cgtatataggcagaacacctaaaataaacaccataaaa 25657866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 26367774 - 26367823
Alignment:
Q  134 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatc 183  Q
    ||||||||||| || |||| ||||||||||||||||| ||||||| ||||    
T  26367774 gagaacaacaaccatcaaatccaacttcaccacctaagtcaaactccatc 26367823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 15126857 - 15126901
Alignment:
Q  134 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaact 178  Q
    ||||||||||| ||| |||| |||| |||||||||||||||||||    
T  15126857 gagaacaacaaccacaaaaaacaacatcaccacctaaatcaaact 15126901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 20500323 - 20500283
Alignment:
Q  50 gtatataggcagaacacctaaaatcaacaccataaaagaca 90  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    
T  20500323 gtatataggcggaacacccaaaataaacaccataaaagaca 20500283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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