View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8303_low_12 (Length: 213)
Name: NF8303_low_12
Description: NF8303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8303_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 41511592 - 41511776
Alignment:
| Q |
12 |
ttggtgttgaatttccattgaagtggggagaggaagagaaactaggggtggttgtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatga |
111 |
Q |
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| T |
41511592 |
ttggtgttgaatttccattgaattggggagaggaagagaaattaggggtggttgtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatga |
41511691 |
T |
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| Q |
112 |
ggaagttgaagagagtaaagagagaagagaaagggccaatgaacttagtgagattgcnnnnnnngctgttgaaaaaggtggatct |
196 |
Q |
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| T |
41511692 |
ggaagttgaagagagtaaagagagaagagaaagggctaatgaacttagtgagattgcaaaaaaagctgttgaaaaaggtggatct |
41511776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 41520680 - 41520816
Alignment:
| Q |
60 |
tggttgtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatgaggaagttgaagagagtaaagagagaagagaaagggccaatgaacttag |
159 |
Q |
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| T |
41520680 |
tggttgtgaagaaggaaggtattaaagaggcaatatgcaatgtgatgaatgaggaagatcaagagagtaaagagagaagagaaagggctaatgaacttag |
41520779 |
T |
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| Q |
160 |
tgagattgcnnnnnnngctgttgaaaaaggtggatct |
196 |
Q |
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| T |
41520780 |
tgagattgcaaaaaaagctgttgaaaaaggtggatct |
41520816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 48532946 - 48533114
Alignment:
| Q |
24 |
ttccattgaagtggggagaggaagagaaactaggggtggttgtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatgaggaagttgaaga |
123 |
Q |
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| T |
48532946 |
ttccaatgaggttgggagtggaagagagtttaggtgtgttggtgaagaaggaaggtattaaagaggcaatatgcatggtgatggatgaggga---gaaga |
48533042 |
T |
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| Q |
124 |
gagtaaagagagaagagaaagggccaatgaacttagtgagattgcnnnnnnngctgttgaaaaaggtggatc |
195 |
Q |
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| T |
48533043 |
aagtaaagagagaagagaaagggctagtaaactaagtgagatggcaaaaagagctgttgaaaaaggtggatc |
48533114 |
T |
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