View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8303_low_4 (Length: 310)
Name: NF8303_low_4
Description: NF8303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8303_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 36776188 - 36775876
Alignment:
| Q |
1 |
caacaataatttacaaatatgataattttctctccctttccattatctttttaaaggagataaaatgacatgacatggatgaataaataaataataaaag |
100 |
Q |
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| T |
36776188 |
caacaataatttacaaatatgataattttctctccctttccattatctttt-aaaggagataaaatgacatgacatggatgaataaataaataataaaag |
36776090 |
T |
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| Q |
101 |
agtggtcaagtagcaatgta----gcaagggtcccttaaaagaaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatcc |
196 |
Q |
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| T |
36776089 |
agtggtcaagtagcaatgtacgtagcaagggtcccttaaaagaaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatcc |
36775990 |
T |
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| Q |
197 |
ttatttttctcactcaaaacaaacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatatgttaatgttcctatagacaataaccttgttgc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36775989 |
ttatttttctcactcaaaacaaacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatatgttcatgttcctatagacaataaccttgttgc |
36775890 |
T |
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| Q |
297 |
taatactattttgt |
310 |
Q |
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| T |
36775889 |
taatactattttgt |
36775876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 36789013 - 36788735
Alignment:
| Q |
1 |
caacaataatttacaaatatgataattttctctc-cctttccattatctttttaaaggagataaaatgacatgacatggatgaataaataaataataaaa |
99 |
Q |
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| T |
36789013 |
caacaataatttacaaatatgatattttcctctttcctttccattttctttt--aaggagataaaataacatgacatggatgaataattaaaaaaaaaaa |
36788916 |
T |
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| Q |
100 |
---gagtggtcaagtagcaatgtagcaagggtcccttaaaagaaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatcc |
196 |
Q |
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| T |
36788915 |
aaagagtggtcaggtagcaatgtaacaagggtcccttaacaaaaaagaccttgtagctctataatctttgcaaaacctcaaatcgtgaaccaacttatcc |
36788816 |
T |
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| Q |
197 |
ttatttttctcactcaaaacaaacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatatgttaatgttccta |
277 |
Q |
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| T |
36788815 |
ttatttttcccactcaaaacaaacaagtgtggtaaatcttgtgatgcttcatttgaaccttgatatatgttcatgttccta |
36788735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 36760907 - 36760727
Alignment:
| Q |
139 |
aaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatccttatttttctcactcaaaacaaacaagtgttgtaaatctttt |
238 |
Q |
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|||||||||||||| ||||||| | ||||| ||| ||| | |||||||| ||||||||||| | |||||||||||||| |||||| |||||| | |
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| T |
36760907 |
aaaagaccttgtagttctagaatccttgcaaaacttcaaactatgaaccaaataatccttattcacacctctcaaaacaaacaactgttgtgaatcttgt |
36760808 |
T |
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| Q |
239 |
gatgcttcatttgaacc---ttgatatatgttaatgttcctatagac------aataaccttgttgctaatactattttgt |
310 |
Q |
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| T |
36760807 |
gatgcttcatttgaagctaattgatttatgttcatgtttccagagacaacgttaacaaccttgttgctaatactattttgt |
36760727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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