View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8303_low_5 (Length: 296)
Name: NF8303_low_5
Description: NF8303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8303_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 38028613 - 38028784
Alignment:
| Q |
13 |
agcagagacatcaaggtgagggaaaaatggtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagactt |
112 |
Q |
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| T |
38028613 |
agcagaggcatcaaggtgagggaaaaatagtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagactt |
38028712 |
T |
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| Q |
113 |
attaacactccactctaaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaagaaagca |
184 |
Q |
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| T |
38028713 |
attaacactccactctaaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaaggaagca |
38028784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 38028754 - 38028797
Alignment:
| Q |
237 |
ttaatggaaacacaaaacaactaaggaaccaatgatctcaaaac |
280 |
Q |
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| T |
38028754 |
ttaatggaaacacaaaacaagtaaggaagcattgatctcaaaac |
38028797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 15150883 - 15150837
Alignment:
| Q |
185 |
attaagattaaaattaagcaataacaaataacggaaagtgaaaacta |
231 |
Q |
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| T |
15150883 |
attaagattaaaatattgcaataacaaataacagaaagtgaaaacta |
15150837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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