View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8303_low_6 (Length: 270)

Name: NF8303_low_6
Description: NF8303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8303_low_6
NF8303_low_6
[»] chr8 (22 HSPs)
chr8 (13-257)||(31915063-31915309)
chr8 (177-246)||(25881351-25881420)
chr8 (194-256)||(31875548-31875610)
chr8 (177-270)||(6950363-6950456)
chr8 (159-244)||(16162827-16162912)
chr8 (194-270)||(14949907-14949983)
chr8 (203-263)||(30987953-30988013)
chr8 (159-270)||(7008640-7008750)
chr8 (159-262)||(9700050-9700153)
chr8 (160-270)||(2487927-2488037)
chr8 (193-270)||(21130655-21130730)
chr8 (201-270)||(11569417-11569486)
chr8 (177-270)||(30191077-30191170)
chr8 (162-262)||(1561326-1561426)
chr8 (194-262)||(39049321-39049389)
chr8 (159-262)||(2091812-2091915)
chr8 (195-270)||(4055570-4055645)
chr8 (160-262)||(7714291-7714393)
chr8 (177-243)||(37822595-37822661)
chr8 (195-252)||(8558719-8558776)
chr8 (222-270)||(11183586-11183634)
chr8 (180-268)||(26410323-26410411)
[»] chr4 (28 HSPs)
chr4 (159-270)||(32071909-32072015)
chr4 (183-262)||(2996622-2996701)
chr4 (195-270)||(29467578-29467653)
chr4 (201-270)||(27721758-27721827)
chr4 (194-262)||(27123305-27123373)
chr4 (169-268)||(25583635-25583734)
chr4 (172-270)||(2841667-2841765)
chr4 (177-243)||(18628489-18628555)
chr4 (160-262)||(55870261-55870363)
chr4 (201-270)||(4691889-4691958)
chr4 (157-262)||(11264350-11264455)
chr4 (201-262)||(21043195-21043256)
chr4 (177-270)||(33534105-33534198)
chr4 (206-270)||(41050732-41050794)
chr4 (201-262)||(41097216-41097277)
chr4 (201-270)||(50799990-50800059)
chr4 (203-270)||(1965982-1966048)
chr4 (201-255)||(6428074-6428128)
chr4 (160-254)||(6987660-6987754)
chr4 (169-219)||(22523772-22523822)
chr4 (157-258)||(7367970-7368071)
chr4 (201-258)||(19394723-19394780)
chr4 (177-270)||(45927390-45927483)
chr4 (183-228)||(46860001-46860046)
chr4 (169-262)||(50298565-50298657)
chr4 (194-270)||(4684058-4684134)
chr4 (177-245)||(12817001-12817069)
chr4 (177-245)||(24370887-24370955)
[»] scaffold0311 (1 HSPs)
scaffold0311 (193-270)||(10569-10646)
[»] chr2 (29 HSPs)
chr2 (200-262)||(34651995-34652057)
chr2 (180-262)||(19977996-19978078)
chr2 (193-262)||(9478348-9478417)
chr2 (193-267)||(33942194-33942270)
chr2 (210-270)||(1494415-1494475)
chr2 (191-270)||(43456657-43456736)
chr2 (180-262)||(43985258-43985340)
chr2 (201-270)||(787373-787442)
chr2 (193-270)||(27237845-27237922)
chr2 (158-270)||(15120224-15120336)
chr2 (222-270)||(30538154-30538202)
chr2 (194-262)||(41041975-41042043)
chr2 (194-270)||(41809198-41809274)
chr2 (201-269)||(43811152-43811220)
chr2 (194-245)||(9996804-9996855)
chr2 (195-262)||(11344724-11344791)
chr2 (195-270)||(31228791-31228866)
chr2 (177-255)||(5759511-5759588)
chr2 (208-262)||(32821858-32821912)
chr2 (177-255)||(38077009-38077087)
chr2 (157-267)||(44606026-44606136)
chr2 (231-264)||(15377813-15377846)
chr2 (204-257)||(28803493-28803546)
chr2 (194-262)||(757498-757566)
chr2 (201-257)||(1318290-1318346)
chr2 (210-262)||(13220482-13220534)
chr2 (201-245)||(29429717-29429761)
chr2 (156-267)||(33231867-33231976)
chr2 (193-245)||(43808624-43808676)
[»] chr6 (24 HSPs)
chr6 (157-270)||(281764-281877)
chr6 (163-257)||(27857412-27857506)
chr6 (157-262)||(33737619-33737724)
chr6 (195-263)||(32917245-32917313)
chr6 (160-262)||(8420115-8420218)
chr6 (194-262)||(2460104-2460172)
chr6 (194-270)||(32577939-32578015)
chr6 (194-262)||(32976027-32976095)
chr6 (188-270)||(32171330-32171412)
chr6 (212-270)||(34939554-34939612)
chr6 (201-270)||(3155216-3155285)
chr6 (207-270)||(2027764-2027827)
chr6 (183-270)||(34538160-34538247)
chr6 (206-268)||(7490415-7490477)
chr6 (159-269)||(30863288-30863398)
chr6 (193-270)||(3775080-3775157)
chr6 (201-262)||(6963039-6963100)
chr6 (170-215)||(8431763-8431808)
chr6 (200-245)||(24782257-24782302)
chr6 (182-262)||(2112249-2112329)
chr6 (222-270)||(2117444-2117492)
chr6 (210-270)||(4324423-4324482)
chr6 (222-270)||(4420684-4420732)
chr6 (194-262)||(27693392-27693460)
[»] chr3 (33 HSPs)
chr3 (201-269)||(31010444-31010512)
chr3 (173-262)||(27294395-27294484)
chr3 (201-269)||(31710847-31710915)
chr3 (201-269)||(31711102-31711170)
chr3 (183-270)||(41724253-41724340)
chr3 (155-262)||(52323808-52323915)
chr3 (201-263)||(25182947-25183009)
chr3 (201-262)||(43875514-43875575)
chr3 (159-244)||(44014716-44014801)
chr3 (182-262)||(20192547-20192627)
chr3 (206-270)||(21574531-21574595)
chr3 (191-262)||(41452572-41452643)
chr3 (194-268)||(49772621-49772695)
chr3 (173-270)||(30923831-30923927)
chr3 (201-270)||(36200137-36200206)
chr3 (205-262)||(37273183-37273240)
chr3 (201-261)||(659820-659880)
chr3 (160-220)||(20210847-20210907)
chr3 (183-270)||(2923519-2923606)
chr3 (159-270)||(4534293-4534404)
chr3 (203-270)||(11039301-11039368)
chr3 (183-270)||(43115097-43115184)
chr3 (203-245)||(48588723-48588765)
chr3 (201-262)||(1810026-1810087)
chr3 (201-270)||(14548681-14548750)
chr3 (162-262)||(20173811-20173909)
chr3 (193-262)||(29771887-29771956)
chr3 (205-262)||(40880912-40880969)
chr3 (180-245)||(50015952-50016017)
chr3 (202-262)||(34707457-34707517)
chr3 (194-270)||(43080054-43080130)
chr3 (172-252)||(49465868-49465947)
chr3 (175-270)||(50004693-50004789)
[»] chr7 (20 HSPs)
chr7 (203-270)||(48157082-48157149)
chr7 (177-270)||(33645896-33645990)
chr7 (173-270)||(25670518-25670615)
chr7 (194-268)||(36537951-36538025)
chr7 (202-262)||(27626084-27626144)
chr7 (206-253)||(31002998-31003045)
chr7 (203-270)||(36598318-36598385)
chr7 (224-270)||(11047908-11047954)
chr7 (204-270)||(12234852-12234918)
chr7 (201-270)||(33894668-33894737)
chr7 (177-270)||(34754746-34754839)
chr7 (194-262)||(4966205-4966273)
chr7 (162-254)||(8427070-8427162)
chr7 (231-270)||(39539771-39539810)
chr7 (183-270)||(40428596-40428683)
chr7 (231-270)||(47134747-47134786)
chr7 (160-270)||(22387815-22387925)
chr7 (160-270)||(23214896-23215006)
chr7 (157-270)||(12242285-12242398)
chr7 (180-228)||(20547329-20547377)
[»] chr1 (31 HSPs)
chr1 (160-262)||(4868449-4868550)
chr1 (212-270)||(27963341-27963399)
chr1 (220-270)||(24968395-24968445)
chr1 (220-270)||(25432252-25432302)
chr1 (184-253)||(34536216-34536285)
chr1 (156-270)||(4699530-4699644)
chr1 (177-270)||(38867769-38867860)
chr1 (177-257)||(17631040-17631118)
chr1 (201-270)||(31517700-31517769)
chr1 (177-262)||(32515377-32515462)
chr1 (161-262)||(44115825-44115926)
chr1 (210-270)||(4481971-4482031)
chr1 (177-245)||(8780360-8780428)
chr1 (222-270)||(11639397-11639445)
chr1 (194-270)||(37593637-37593713)
chr1 (159-270)||(3597199-3597310)
chr1 (232-270)||(4622134-4622172)
chr1 (193-243)||(5157140-5157190)
chr1 (208-262)||(5591933-5591987)
chr1 (201-251)||(23373273-23373323)
chr1 (201-262)||(6976973-6977034)
chr1 (161-218)||(24417655-24417712)
chr1 (201-262)||(42336664-42336725)
chr1 (229-269)||(3070078-3070118)
chr1 (214-270)||(4202125-4202180)
chr1 (177-245)||(4363571-4363638)
chr1 (206-254)||(4549506-4549554)
chr1 (193-245)||(16980869-16980921)
chr1 (222-262)||(17628648-17628688)
chr1 (202-270)||(35080031-35080098)
chr1 (231-267)||(35350684-35350720)
[»] scaffold0141 (1 HSPs)
scaffold0141 (169-257)||(9706-9794)
[»] chr5 (21 HSPs)
chr5 (177-261)||(11457148-11457232)
chr5 (157-255)||(11095411-11095509)
chr5 (200-262)||(37611174-37611236)
chr5 (200-262)||(37787904-37787966)
chr5 (195-257)||(38047833-38047895)
chr5 (161-254)||(39257314-39257407)
chr5 (159-242)||(29336699-29336782)
chr5 (203-270)||(37526161-37526228)
chr5 (203-270)||(37690598-37690665)
chr5 (180-270)||(40159858-40159949)
chr5 (208-270)||(35960454-35960516)
chr5 (220-270)||(37794677-37794727)
chr5 (204-270)||(40205038-40205103)
chr5 (159-217)||(40335791-40335849)
chr5 (201-262)||(10907427-10907488)
chr5 (157-270)||(11297112-11297225)
chr5 (183-228)||(12407672-12407717)
chr5 (201-270)||(25720377-25720446)
chr5 (201-270)||(32172694-32172763)
chr5 (196-262)||(4855747-4855810)
chr5 (178-262)||(13781812-13781896)
[»] scaffold0608 (1 HSPs)
scaffold0608 (210-270)||(9606-9666)
[»] scaffold0426 (1 HSPs)
scaffold0426 (177-245)||(4282-4350)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 31915063 - 31915309
Alignment:
Q  13 catcagtacccctgttgaagaacaattacaaagtactcaatagaaatccgtcccaannnnnnnnnn--gtctgaaaattacttagttcctccatacccaa 110  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  31915063 catcagtacccctgttgaagaacaattacgaagtactcaatagaaatccgtcccaattttttttttttgtctgaaaattacttagttcctccatacccaa 31915162  T
Q  111 atttgatatctcagtgatttttaactttttatttgactaaatatatgtctgtttggactgatttacttgagtttatctattcacataaatacttgtgaga 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31915163 atttgatatctcactgatttttaactttttatttgactaaatatatgtctgtttggactgatttacttgagtttatctattcacataaatacttgtgaga 31915262  T
Q  211 ctgtttgagaaagcttatataaacaacttatgacacgtccataagct 257  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  31915263 ctgtttgagaaagcttatacaaacaacttatgacaagtccataagct 31915309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 25881351 - 25881420
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacac 246  Q
    ||||||||||||| | |||||| ||||||||||||||||||| | |||||| | ||||||||||||||||    
T  25881351 ttgagtttatctactgacataagtacttgtgagactgtttgaaagagcttagagaaacaacttatgacac 25881420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 31875548 - 31875610
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagc 256  Q
    |||||| ||| |||| |||||||||||||||||||  ||||||||||||||| ||||||||||    
T  31875548 cataaacactagtgacactgtttgagaaagcttatggaaacaacttatgacatgtccataagc 31875610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 6950456 - 6950363
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||| |  |||||| | |||||||| |||||| || ||||||| |||||||| ||||||| ||| ||||| |||||| |||||||    
T  6950456 ttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttat 6950363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 16162912 - 16162827
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgac 244  Q
    ||||||||| ||  ||| ||||||||||||| |  |||||| |||||||||||||||||||||| |||||  ||||| ||||||||    
T  16162912 ctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgac 16162827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 14949983 - 14949907
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| | ||||||||||||||  || |||||||  ||| ||||||||||| |||||||||||||||| |||||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttat 14949907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 30987953 - 30988013
Alignment:
Q  203 ttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgttttt 263  Q
    ||||||| |||||||||| |||||||  ||||||||||||||| ||||||||||| |||||    
T  30987953 ttgtgagtctgtttgagagagcttatggaaacaacttatgacatgtccataagctattttt 30988013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 7008750 - 7008640
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    ||||||| | ||| ||| ||||||||||||| |  |||||  ||||||||||| ||| |||| |||||||| ||||||| ||||||| |||| |||| |     
T  7008750 ctgtttgaattgacttatttgagtttatctactggcataagcacttgtgagac-gttagagagagcttatagaaacaacctatgacatgtccttaagata 7008652  T
Q  259 tttttagcttat 270  Q
    ||||||||||||    
T  7008651 tttttagcttat 7008640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 9700153 - 9700050
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    ||||||||| | | ||| ||||| ||||||| |  |||||| |||||||||||| ||||||| ||||| |  || ||| |||||||| ||||||||||||    
T  9700153 ctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctg 9700054  T
Q  259 tttt 262  Q
    ||||    
T  9700053 tttt 9700050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 2487927 - 2488037
Alignment:
Q  160 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgt 259  Q
    |||||||| ||  ||| ||||||| ||||| | ||||||  ||||||||||||||||| || | |||||  ||||||||||| ||| || || || ||||    
T  2487927 tgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttataacatgttcaaaaactgt 2488026  T
Q  260 ttttagcttat 270  Q
    |||||||||||    
T  2488027 ttttagcttat 2488037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 21130730 - 21130655
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||||||||||||||||| |||||||  ||| | ||| ||||| ||||||  |||||||| |||||||    
T  21130730 acataaatacttgtgagactgtttgagagagcttatggaaatagcttttgacatgtccat--gctgttttgagcttat 21130655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 11569417 - 11569486
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||||| ||| |||||||  ||||| ||||||||| || |||||| |||||| |||||||    
T  11569417 acttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttat 11569486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 30191077 - 30191170
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||||  |||||  |||||| |||||||||| || |||||||  ||||||||||||||| || || ||  |||||| |||||||    
T  30191077 ttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttat 30191170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 1561426 - 1561326
Alignment:
Q  162 tttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgttt 261  Q
    |||||| ||||||| ||||  ||||||| |  |||||| |||||||||| ||||||||| |||| | | ||||||||||||| |  |||||||| |||||    
T  1561426 tttggattgatttatttgatcttatctaatggcataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttgttt 1561327  T
Q  262 t 262  Q
    |    
T  1561326 t 1561326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 39049389 - 39049321
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||| | |||||||| |||||| ||||||||||  ||||||||||| ||| ||| ||||||||||||    
T  39049389 cataaacatttgtgagattgtttgtgaaagcttatgaaaacaacttataacatgtcaataagctgtttt 39049321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 2091915 - 2091812
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    ||||||||| ||||||| ||||  ||||| | |  |||||| |||||||||| ||||||||| |||| | | ||||||||||||| |  |||||||| ||    
T  2091915 ctgtttggattgatttatttgatcttatccaatggcataaacacttgtgagattgtttgagagagctcacaaaaacaacttatgatatatccataagttg 2091816  T
Q  259 tttt 262  Q
    ||||    
T  2091815 tttt 2091812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 4055570 - 4055645
Alignment:
Q  195 ataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| ||||| | |||||||| || || ||||| ||| ||||||||||| |||||||| ||||||| |||||||    
T  4055570 ataaatgcttgtaaaactgtttgggagagtttatagaaataacttatgacatgtccataaactgttttcagcttat 4055645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 7714393 - 7714291
Alignment:
Q  160 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgt 259  Q
    |||||||| ||| ||| ||||| |||| || |  |||||| |||||||||||||||||  ||||||| |  ||||||||||||| | ||| || ||||||    
T  7714393 tgtttggattgacttatttgagcttatataatgtcataaacacttgtgagactgtttggaaaagcttgtggaaacaacttatgaaatgtcgatgagctgt 7714294  T
Q  260 ttt 262  Q
    |||    
T  7714293 ttt 7714291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 37822595 - 37822661
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatga 243  Q
    ||||||||||||| | |||||| || ||||||||||||||||||||  ||||  |||||| ||||||    
T  37822595 ttgagtttatctaatgacataattatttgtgagactgtttgagaaaatttattaaaacaatttatga 37822661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 8558776 - 8558719
Alignment:
Q  195 ataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccat 252  Q
    ||||||||||||||| ||||||| || |||||||  ||||||||| ||||| ||||||    
T  8558776 ataaatacttgtgaggctgtttgggagagcttatggaaacaacttgtgacatgtccat 8558719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 11183634 - 11183586
Alignment:
Q  222 agcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||| ||||||||||||| | ||| |||||||||||| |||||||    
T  11183634 agcttataaaaacaacttatgatatgtctataagctgttttcagcttat 11183586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 26410411 - 26410323
Alignment:
Q  180 agtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctt 268  Q
    |||||||| | | ||||||  |||| |||||||| ||| || |||||||  ||||| || |||||| ||||| ||||||||||||||||    
T  26410411 agtttatcaactgacataagcacttctgagactgcttgggagagcttatggaaacagctcatgacatgtccagaagctgtttttagctt 26410323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 32072015 - 32071909
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    ||||||||||||| ||| ||||||||||||||| ||||||  ||||||||||| |||||||     ||||  ||||||||||||||||||||||||||||    
T  32072015 ctgtttggactgacttatttgagtttatctattgacataagcacttgtgagacagtttgag-----ttatggaaacaacttatgacacgtccataagctg 32071921  T
Q  259 tttttagcttat 270  Q
    |||| |||||||    
T  32071920 ttttaagcttat 32071909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 2996701 - 2996622
Alignment:
Q  183 ttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||| |||| ||||||  |||| ||||||||||||||| |||||||  ||||||||||||||| ||||||||||| ||||    
T  2996701 ttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagctttttt 2996622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 29467578 - 29467653
Alignment:
Q  195 ataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||||| || |||  |||||||||| ||||  ||||||||| |||||||||||||||| |||||||    
T  29467578 ataaatacttgtgagattgcttggtaaagcttatagaaacggcttatgacatgtccataagctgttttcagcttat 29467653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 27721827 - 27721758
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||| ||||| ||| |||||||| |||| ||||||||||  ||||||||||||||| |||||||    
T  27721827 acttgtgagattgtttaagagagcttataaaaactacttatgacatatccataagctgttttcagcttat 27721758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 27123305 - 27123373
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||| ||||||||||||||||||||| |||||||  ||||||||||||||| |||  |||| ||||||    
T  27123305 cataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgtttt 27123373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 25583734 - 25583635
Alignment:
Q  169 tgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctt 268  Q
    ||||||| ||||||||||||  | ||||||| |  |||||||||||||| ||  ||||||  ||||||||||||||| ||||| ||| |||||| |||||    
T  25583734 tgatttatttgagtttatcttctgacataaacatgtgtgagactgtttgggagcgcttatgcaaacaacttatgacatgtccaaaagttgttttcagctt 25583635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 2841765 - 2841667
Alignment:
Q  172 tttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||| ||||||||||| ||| ||||||| ||| |||||| |||||| || || ||||  || |||||||||||| ||| ||||| |||||| |||||||    
T  2841765 tttatttgagtttatccattgacataaaaactcgtgagattgtttgcgagagtttatgaaagcaacttatgacatgtcaataagttgttttcagcttat 2841667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 18628489 - 18628555
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatga 243  Q
    ||||| ||||||| | ||||||| ||||||||||||||||| || |||||||  |||||||||||||    
T  18628489 ttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 55870261 - 55870363
Alignment:
Q  160 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgt 259  Q
    |||||||| | | ||| ||||||||||||| | ||||||| | |||||||||| ||||||| |||||||  ||| |  |||||||  |||||||||||||    
T  55870261 tgtttggattaacttatttgagtttatctaatgacataaacatttgtgagactctttgagatagcttatgaaaaaagtttatgacctgtccataagctgt 55870360  T
Q  260 ttt 262  Q
    |||    
T  55870361 ttt 55870363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 4691958 - 4691889
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||| ||||||||| |||||  ||||||||||||||| | ||||| | |||||| |||||||    
T  4691958 acttgtgagactatttgagaaaacttatggaaacaacttatgacatgcccatatgttgttttcagcttat 4691889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 11264455 - 11264350
Alignment:
Q  157 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagc 256  Q
    ||||||||||| ||  ||| |||||| |||||| |  |||||| |  |||||||||||||| || ||| |||| || |||||||||||| |||||||| |    
T  11264455 gtctgtttggattggcttatttgagtctatctactagcataaacatctgtgagactgtttgggagagcatatagaatcaacttatgacatgtccataaac 11264356  T
Q  257 tgtttt 262  Q
    ||||||    
T  11264355 tgtttt 11264350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 21043195 - 21043256
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||||||||| || || ||||  ||||| |||||||||||| |||||||||||||    
T  21043195 acttgtgagactgtttgggagaggttatggaaacagcttatgacacgttcataagctgtttt 21043256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 33534105 - 33534198
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||| ||||||| | |||||| ||||||||||| | ||||||| |||||||  |||||| || |||||  |||||||| |||||| |||||||    
T  33534105 ttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagcttat 33534198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 41050794 - 41050732
Alignment:
Q  206 tgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||| ||||||||| ||||  ||||||||||||||||  | ||||||||||||||||||||    
T  41050794 tgagactgcttgagaaagtttatggaaacaacttatgacac--ctataagctgtttttagcttat 41050732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 41097216 - 41097277
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||||||| | || |||||||| |||||||| |||||| ||||||||||| ||||    
T  41097216 acttgtgagactgttcgggagagcttatagaaacaactaatgacatgtccataagctatttt 41097277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 50799990 - 50800059
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||| |||||| || | || || |||||||||||||||| ||| |||||||||||| |||||||    
T  50799990 acttgtgagattgtttgggagaactaatgtaaacaacttatgacatgtctataagctgttttcagcttat 50800059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 1966048 - 1965982
Alignment:
Q  203 ttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||| || | ||||||  ||||||||||||||| || ||||||||||||||| |||||    
T  1966048 ttgtgagactgttttagga-gcttatgaaaacaacttatgacatgttcataagctgtttttaacttat 1965982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 6428128 - 6428074
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataag 255  Q
    ||||||||||| |||||||| || ||||  ||||||||||||||| |||||||||    
T  6428128 acttgtgagacagtttgagagagattatgaaaacaacttatgacatgtccataag 6428074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 6987660 - 6987754
Alignment:
Q  160 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataa 254  Q
    |||||| | ||| ||| ||||||||||||| |  ||||| |  ||||||||||||||| || |||||||  | ||||||||||||| ||||||||    
T  6987660 tgtttgtattgacttaattgagtttatctactagcataagtgtttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataa 6987754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 22523822 - 22523772
Alignment:
Q  169 tgatttacttgagtttatctattcacataaatacttgtgagactgtttgag 219  Q
    ||||||| | ||||||||||| | |||||| ||||||||||||||||||||    
T  22523822 tgatttattcgagtttatctactgacataagtacttgtgagactgtttgag 22523772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 7367970 - 7368071
Alignment:
Q  157 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagc 256  Q
    ||||||||||| ||| ||| |||||||||||||    ||||||  |||||||||||||||| || |||| ||  ||||| ||||||||| ||  ||||||    
T  7367970 gtctgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgtttataagc 7368069  T
Q  257 tg 258  Q
    ||    
T  7368070 tg 7368071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 19394723 - 19394780
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    |||||||||||||||||  | |||||||| ||||||||||| ||| || |||||||||    
T  19394723 acttgtgagactgtttgccagagcttatagaaacaacttattacatgtacataagctg 19394780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 45927483 - 45927390
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||||| |||||||  ||| ||||||||||| | ||||||| |  |||||| | ||||||    ||||||||||||| |||||||    
T  45927483 ttgagtttatctattaacataaacccttttgagactgtttcacaaagcttgtggaaacaattcatgacatacgcataagctgttttcagcttat 45927390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 46860046 - 46860001
Alignment:
Q  183 ttatctattcacataaatacttgtgagactgtttgagaaagcttat 228  Q
    ||||||||||||||||  |||||||| ||||||||||| |||||||    
T  46860046 ttatctattcacataagcacttgtgaaactgtttgagagagcttat 46860001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 50298657 - 50298565
Alignment:
Q  169 tgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||| || || ||||||| | ||||||  |||||||||||||||||  ||| |||||| ||| | ||||||||| || |||||||||||||    
T  50298657 tgatttattttagcttatctactgacataagcacttgtgagactgtttggaaaaacttata-aaatagcttatgacatgttcataagctgtttt 50298565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 4684058 - 4684134
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| ||||| || |||||||| || ||||||   ||| |||||| |||| |||| |||||||||||||||||||    
T  4684058 cataaacacttgagaaactgtttgggagagcttagtaaaataacttaagacatgtccgtaagctgtttttagcttat 4684134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 12817069 - 12817001
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||| |||| |||| | |||||||||||||||| ||||||| | | |||| | |||||||||||||||    
T  12817069 ttgagattatatattgatataaatacttgtgagattgtttgaaagaacttagagaaacaacttatgaca 12817001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 24370887 - 24370955
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||| |||||||||| |||||  || ||||||| ||||||| ||| |||||  |||||||||||||||    
T  24370887 ttgagcttatctattcgcataagcacatgtgagaatgtttgataaaacttatggaaacaacttatgaca 24370955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 10569 - 10646
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||| |||||| |||||||    
T  10569 acataagtacttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgttttcagcttat 10646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 34651995 - 34652057
Alignment:
Q  200 tacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  34651995 tacttgtgagacggttggagaaagcttatagaaacaacttatgacatgtccataagctgtttt 34652057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 19978078 - 19977996
Alignment:
Q  180 agtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||||| | ||||  ||||| |||||||||||||| | |||||| ||||||||||| |||||| |||||| ||||||    
T  19978078 agtttatctattaaaataagcacttgcgagactgtttgagagaacttatagaaacaacttataacacgttcataagttgtttt 19977996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 9478417 - 9478348
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||| |||||||| |||||||||||| || ||||  ||||||||||| ||| ||||||||||||||||    
T  9478417 acataagtacttgtgtgactgtttgagagagtttatgcaaacaacttattacatgtccataagctgtttt 9478348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 33942270 - 33942194
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttat--ataaacaacttatgacacgtccataagctgtttttagct 267  Q
    |||||||||| ||||||||||||||||| |||||||  | | ||||||||||||| || ||||||||||||| ||||    
T  33942270 acataaatacctgtgagactgtttgagagagcttatggagagacaacttatgacatgttcataagctgttttcagct 33942194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 1494415 - 1494475
Alignment:
Q  210 actgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||| |||||||  ||||| ||||||||| |||||||| |||||||||||||||    
T  1494415 actgtttgagagagcttatgaaaacagcttatgacatgtccataaactgtttttagcttat 1494475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 43456657 - 43456736
Alignment:
Q  191 tcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||| |||||| ||||||||||| | ||||| |  |||||||| |||||| |||||||| ||||||| |||||||    
T  43456657 tcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgttttcagcttat 43456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 43985340 - 43985258
Alignment:
Q  180 agtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||| | ||||||| |||||| | ||||||||||| || |||   ||||||||||||||| ||||||||||| ||||    
T  43985340 agtttatctactgacataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtccataagctttttt 43985258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 787442 - 787373
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||| |||||||| || | |||||  ||||| ||||||||| |||||||||||||||| |||||||    
T  787442 acttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 27237845 - 27237922
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||| ||| |||| ||||||||  | | |||||| ||||| ||||||||| || |||||||||||||||||||||    
T  27237845 acataaacactagtgaaactgtttggtagaacttatagaaacagcttatgacatgtacataagctgtttttagcttat 27237922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 15120336 - 15120224
Alignment:
Q  158 tctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagct 257  Q
    |||||||||| ||| ||| ||||  ||||||| |  |||||| | ||||||  ||||||| || |||||||  ||||||||||||||| || ||| ||||    
T  15120336 tctgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagct 15120237  T
Q  258 gtttttagcttat 270  Q
    ||||| |||||||    
T  15120236 gttttaagcttat 15120224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 30538154 - 30538202
Alignment:
Q  222 agcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||| ||||||||||||||| ||||||||| |||||| |||||||    
T  30538154 agcttatagaaacaacttatgacatgtccataagttgttttcagcttat 30538202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 41041975 - 41042043
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||| |||||||||||||||| ||| |  ||||| ||||||||||| ||| |||||| |||||||||    
T  41041975 cataaaaacttgtgagactgtttcagagaatttatagaaacaacttattacatgtccatcagctgtttt 41042043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 41809198 - 41809274
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| ||||||||||||| |||  | ||||| |  ||||||||||||||| || |||||| ||||||||||||||    
T  41809198 cataaacacttgtgagactgattgtaagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttat 41809274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 43811220 - 43811152
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctta 269  Q
    |||||||| ||||||||||||| |||||  |||||||||||| || |  ||||||||||||| ||||||    
T  43811220 acttgtgatactgtttgagaaaccttatggaaacaacttatggcatggtcataagctgttttcagctta 43811152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 9996855 - 9996804
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||| |||||||||||||| ||| || |||||||| |||||||||||||||    
T  9996855 cataagtacttgtgagactgcttgggagagcttatagaaacaacttatgaca 9996804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 11344724 - 11344791
Alignment:
Q  195 ataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||| ||||||||| ||||||||| | | |||||  ||||||||||||||| |||||||| |||||||    
T  11344724 ataagtacttgtgaaactgtttgacagaccttatggaaacaacttatgacatgtccataaactgtttt 11344791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 31228791 - 31228866
Alignment:
Q  195 ataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||| ||||||||||||||||| ||  ||||||  |||||| |||||||| ||  ||||||||||||||| ||||    
T  31228791 ataaacacttgtgagactgtttgggagtgcttattcaaacaatttatgacatgtatataagctgtttttaggttat 31228866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 5759511 - 5759588
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataag 255  Q
    |||||||||||||||   |||| |||||||||||||||||| || |||||||  ||||| |||| |||| |||||||||    
T  5759511 ttgagtttatctattggtataagtacttgtgagactgtttgggagagcttatggaaacagctta-gacatgtccataag 5759588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 32821912 - 32821858
Alignment:
Q  208 agactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||  | || ||||| ||||||||||||||| ||||||||||||||||    
T  32821912 agactgtttggaagagtttatagaaacaacttatgacatgtccataagctgtttt 32821858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 38077009 - 38077087
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataag 255  Q
    ||||| || |||||||||||||| |||||||||| ||||||||| | ||| |  |||||||||| ||||  ||||||||    
T  38077009 ttgagcttttctattcacataaacacttgtgagattgtttgagagaacttcttaaaacaacttacgacatttccataag 38077087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 44606026 - 44606136
Alignment:
Q  157 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagc 256  Q
    ||||||||||  ||| ||| |||||| | | |||| |||||| |||||||  |||||||||  | | |||||  ||||||||||||||| |||||||||     
T  44606026 gtctgtttgggttgacttatttgagtgtttatattgacataagtacttgtacgactgtttggaagaacttatgaaaacaacttatgacatgtccataagt 44606125  T
Q  257 tgtttttagct 267  Q
    |||||| ||||    
T  44606126 tgttttcagct 44606136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 15377846 - 15377813
Alignment:
Q  231 aaacaacttatgacacgtccataagctgttttta 264  Q
    ||||||||||||||||||||||||||| ||||||    
T  15377846 aaacaacttatgacacgtccataagctattttta 15377813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 28803493 - 28803546
Alignment:
Q  204 tgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagct 257  Q
    ||||||||||||||||| | | |||  ||||||||||||||| |||||||||||    
T  28803493 tgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataagct 28803546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 757566 - 757498
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||| |||||||||||| ||  ||||||| |||||  || ||||| ||||||||| ||||||    
T  757566 cataaatacttatgagactgtttgggagggcttataaaaacagattttgacatgtccataagttgtttt 757498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 1318346 - 1318290
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagct 257  Q
    ||||||||||||||||| || |||||||  ||||| ||||||||| ||||| |||||    
T  1318346 acttgtgagactgtttgtgagagcttatgaaaacatcttatgacatgtccagaagct 1318290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 13220534 - 13220482
Alignment:
Q  210 actgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||| | |||||| ||||||||||||||  || |||||||||||||    
T  13220534 actgtttgagagaacttataaaaacaacttatgacttgttcataagctgtttt 13220482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 29429717 - 29429761
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||||||||||||||| || |||||||| |||||||| ||||||    
T  29429717 acttgtgagactgtttgggagagcttatagaaacaactaatgaca 29429761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 33231867 - 33231976
Alignment:
Q  156 tgtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataag 255  Q
    |||||||||||| || |||| | ||| |||||||||  |||||  | |||||  ||||| ||||| |||||||  |||| |||||||  |||||||||||    
T  33231867 tgtctgtttggattggtttattcgagattatctattggcataatcatttgtgttactgtctgagagagcttatggaaaccacttatg--acgtccataag 33231964  T
Q  256 ctgtttttagct 267  Q
    ||||||| ||||    
T  33231965 ctgttttcagct 33231976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 43808676 - 43808624
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    |||||||||||||| ||||| ||||||| |||||||  ||| |||||||||||    
T  43808676 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgaca 43808624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 281764 - 281877
Alignment:
Q  157 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagc 256  Q
    ||||||||||| ||| ||||||||| |||| || | |||||| |||||||||||||||||| || |||| ||  || |||||||||||| ||| |||||     
T  281764 gtctgtttggattgacttacttgagattatgtagtgacataagtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagt 281863  T
Q  257 tgtttttagcttat 270  Q
    |||||| |||||||    
T  281864 tgttttcagcttat 281877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 27857506 - 27857412
Alignment:
Q  163 ttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagct 257  Q
    |||||||| |||| ||||||||||||| | ||||| | |||||||| |||||||| || |||||||  |||||||||||||||  ||||||||||    
T  27857506 ttggactggtttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacatctccataagct 27857412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 33737724 - 33737619
Alignment:
Q  157 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagc 256  Q
    ||||||||||| ||| ||| | ||||||||||||| ||||||| |||||||  ||||||||||| | |||||  | |||||||||| || || |||||||    
T  33737724 gtctgtttggaatgacttattcgagtttatctattgacataaacacttgtgcaactgtttgagagaacttatgaacacaacttatggcatgttcataagc 33737625  T
Q  257 tgtttt 262  Q
    ||||||    
T  33737624 tgtttt 33737619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 32917313 - 32917245
Alignment:
Q  195 ataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgttttt 263  Q
    ||||| ||||||||||||||||| || |||||||  ||||||||||||||| ||||||||||| |||||    
T  32917313 ataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagcttttttt 32917245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 8420115 - 8420218
Alignment:
Q  160 tgtttggactga-tttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    |||||||| ||| |||| ||||| ||||||||| ||||||| ||||||||||||||| | || |||||||| ||| | ||||||||| ||||| |||||     
T  8420115 tgtttggattgactttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagcta 8420214  T
Q  259 tttt 262  Q
    ||||    
T  8420215 tttt 8420218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 2460104 - 2460172
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||| ||||||||||||||||||||| |||||||  ||||||||||||||| |||  |||| ||||||    
T  2460104 cataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgtttt 2460172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 32577939 - 32578015
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||| || | ||||||||| |||||||  ||||||||||||||| |||| | ||||||||| |||||||    
T  32577939 cataaatacttgggacattgtttgagagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttat 32578015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 32976095 - 32976027
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||| ||||||||||||||||||  | |||||||| ||||| |||||||||  |||||||||||||||    
T  32976095 cataagtacttgtgagactgtttggaagagcttatagaaacagcttatgacatttccataagctgtttt 32976027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 32171330 - 32171412
Alignment:
Q  188 tattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||| ||||||  ||||| |||||||||||||| |||||||  ||||| ||||||||| ||||| ||||| |||| |||||||    
T  32171330 tattgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttat 32171412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 34939612 - 34939554
Alignment:
Q  212 tgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||| |||||||  |||||||||||||||||||| |||| |||||| |||||||    
T  34939612 tgtttgagagagcttatggaaacaacttatgacacgtccgtaagttgttttcagcttat 34939554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 3155285 - 3155216
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||| |||||  ||||| | |||||||||| ||||||||||||| ||| |||||||||||| |||||||    
T  3155285 acttgagagaccatttgaaagagcttatatacacaacttatgacatgtctataagctgttttcagcttat 3155216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 2027764 - 2027827
Alignment:
Q  207 gagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||| || |||||||| ||||||||||||||| ||| |||| |||  ||||||||||    
T  2027764 gagactgtttgggagagcttatagaaacaacttatgacatgtcaataaactgcctttagcttat 2027827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 34538160 - 34538247
Alignment:
Q  183 ttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||| ||| ||||  |||||||||||| ||||||| | |||||| ||||| |||| |||| |||||||| || |||| |||||||    
T  34538160 ttatctactcatataagcacttgtgagactatttgagagatcttataaaaacagcttacgacatgtccataaactattttcagcttat 34538247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 7490415 - 7490477
Alignment:
Q  206 tgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctt 268  Q
    |||||||| |||||| |||||||||||||| ||||||| | ||||||| || ||||| |||||    
T  7490415 tgagactgcttgagatagcttatataaacagcttatgatatgtccatatgcagttttcagctt 7490477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 30863398 - 30863288
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    ||||||||| ||| ||| |||||  ||| ||||  |||||| |||||| ||||| ||||  | |||||||  ||||||||||||||| || |||||| ||    
T  30863398 ctgtttggagtgacttatttgagcctatttattggcataaacacttgttagactctttggtagagcttatgaaaacaacttatgacatgtacataagttg 30863299  T
Q  259 tttttagctta 269  Q
    |||| ||||||    
T  30863298 ttttcagctta 30863288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 3775080 - 3775157
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||| |||||||||||| || |  | |||||||| ||||| ||||||||| || ||||| ||||||| |||||||    
T  3775080 acataaacacttgtgagactattcggaagagcttatagaaacagcttatgacatgtgcataaactgttttcagcttat 3775157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 6963039 - 6963100
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||| |||||||||   |||||||| | ||||||||| ||| ||||||||||||||||    
T  6963039 acttgtgaaactgtttgatccagcttatagacacaacttattacatgtccataagctgtttt 6963100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 8431763 - 8431808
Alignment:
Q  170 gatttacttgagtttatctattcacataaatacttgtgagactgtt 215  Q
    |||||||||||||||||||||| || |||  |||||||||||||||    
T  8431763 gatttacttgagtttatctattgacttaagcacttgtgagactgtt 8431808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 24782302 - 24782257
Alignment:
Q  200 tacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||||||| | ||||||||| |||||||| |||||||||||||||    
T  24782302 tacttgtgaaattgtttgagagagcttatagaaacaacttatgaca 24782257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 2112329 - 2112249
Alignment:
Q  182 tttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||| |||||||||||| ||||| ||||  | | | || ||| ||||||||||||||| || |||||| ||||||    
T  2112329 tttatctattgacataaatacttctgagattgttcaaaagatctcatagaaacaacttatgacatgttcataagttgtttt 2112249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 2117492 - 2117444
Alignment:
Q  222 agcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||| |||||| ||||| || ||| ||||||||||||||||||||    
T  2117492 agcttatagaaacaatttatggcatgtctataagctgtttttagcttat 2117444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 4324423 - 4324482
Alignment:
Q  210 actgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||| | |||||| ||||||||||||||| |||| ||| ||| |||||||||||    
T  4324423 actgtttgagagaacttata-aaacaacttatgacatgtccctaaactgcttttagcttat 4324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 4420732 - 4420684
Alignment:
Q  222 agcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||| |||||| |||||||| || ||||||||||||| |||||||    
T  4420732 agcttatagaaacaaattatgacatgttcataagctgttttcagcttat 4420684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 27693392 - 27693460
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||| ||||||||||||| ||||||| |  ||||  ||||||||||||||| || |||||||| ||||    
T  27693392 cataagtacttgtgagactatttgagagaatttatggaaacaacttatgacatgttcataagctatttt 27693460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 31010512 - 31010444
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctta 269  Q
    |||||||||  |||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  31010512 acttgtgagtgtgtttgtgaaagcttatagaaacaacttatgacatgtccataagctgttttcagctta 31010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 27294484 - 27294395
Alignment:
Q  173 ttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||||||||||||  |||||  |||||||||||||||||||| |||| ||| |||||||| |||| | |  |||||||||||||    
T  27294484 ttacttgagtttatctattgtcataagcacttgtgagactgtttgagagagctcatagaaacaactcatgatatgctcataagctgtttt 27294395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 31710847 - 31710915
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctta 269  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||| | |||| ||||||||| ||||||    
T  31710847 acttgtgagtctgtttgtgaaagcttataaaaacaacttatgacatgcccatgagctgttttcagctta 31710915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 31711102 - 31711170
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctta 269  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||| | |||| ||||||||| ||||||    
T  31711102 acttgtgagtctgtttgtgaaagcttataaaaacaacttatgacatgcccatgagctgttttcagctta 31711170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 41724340 - 41724253
Alignment:
Q  183 ttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||| | |||||| ||||||| |||| ||||| |||| |||||  ||||||||||||||| ||||||||| |||||| |||||||    
T  41724340 ttatctactgacataagtacttgtcagacagtttgtgaaaacttatggaaacaacttatgacatgtccataagttgttttcagcttat 41724253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 52323808 - 52323915
Alignment:
Q  155 atgtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataa 254  Q
    |||||||||| || ||| ||| ||||||| ||||| | ||||||  |||||  |||||||||| || |||||||  ||| || |||||||||||||||||    
T  52323808 atgtctgtttagattgacttaattgagttgatctactaacataagcacttgcaagactgtttgtgagagcttattgaaataatttatgacacgtccataa 52323907  T
Q  255 gctgtttt 262  Q
    ||||||||    
T  52323908 gctgtttt 52323915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 25182947 - 25183009
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgttttt 263  Q
    |||||||||||||||||||| |||||||  |||||||||||||||  |||||||||| |||||    
T  25182947 acttgtgagactgtttgagagagcttatgaaaacaacttatgacatatccataagctattttt 25183009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 43875575 - 43875514
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||| ||| |||||| ||||||| ||||||||||||| ||||||||||| ||||||    
T  43875575 acttgtgagattgtctgagaatgcttatagaaacaacttatgatacgtccataagttgtttt 43875514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 44014716 - 44014801
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgac 244  Q
    ||||||||| ||  ||| ||||||||||||| |  |||||| |||||||||||||||||||||| |||||  ||||| ||||||||    
T  44014716 ctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgac 44014801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 20192547 - 20192627
Alignment:
Q  182 tttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||| ||||||  |||| | | ||||| ||||| |||||||| ||||| ||||||||| ||||||||||||||||    
T  20192547 tttatctattgacataagcacttcttacactgtatgagagagcttatagaaacagcttatgacatgtccataagctgtttt 20192627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 21574595 - 21574531
Alignment:
Q  206 tgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||| || |||||||  ||||||||||||||| || ||||||||| |||||||||||    
T  21574595 tgagactgtttgggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttat 21574531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 41452643 - 41452572
Alignment:
Q  191 tcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||| ||||||||||| | ||||||| | |||||| ||||||||||||| | ||| ||||||||||||    
T  41452643 tcacataagtacttgtgagagtatttgagagaccttatagaaacaacttatgatatgtctataagctgtttt 41452572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 49772621 - 49772695
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctt 268  Q
    |||||| ||| ||||||||||||  || |||||||  ||||||||||||| | ||||||||||| ||||||||||    
T  49772621 cataaacactagtgagactgtttaggagagcttatggaaacaacttatgagatgtccataagctttttttagctt 49772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 30923831 - 30923927
Alignment:
Q  173 ttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||| |||| |||| | ||||| ||||||||||||||||  || ||| |||  ||||| ||||||||| ||| |||||||||||| |||||||    
T  30923831 ttacttgagcttatttattgatataaacacttgtgagactgtttatgagagc-tatggaaacagcttatgacatgtctataagctgttttcagcttat 30923927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 36200206 - 36200137
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||| |||| |||| || || | |||||||||||||||| ||||||||| |||||| |||||||    
T  36200206 acttgtgagaatgttggagagagtttttgtaaacaacttatgacatgtccataagttgttttcagcttat 36200137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 37273240 - 37273183
Alignment:
Q  205 gtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||||| || |||||||  ||||||||||||||| ||||||||| ||||||    
T  37273240 gtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgtttt 37273183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 659820 - 659880
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgttt 261  Q
    ||||||||||||||||| || |||| ||| ||||| ||||||||| ||||||||| |||||    
T  659820 acttgtgagactgtttgtgagagctaatagaaacagcttatgacatgtccataagttgttt 659880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 20210847 - 20210907
Alignment:
Q  160 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgaga 220  Q
    |||||||| ||||||| ||||| ||||||| | ||||||  ||||||||||||||||||||    
T  20210847 tgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgaga 20210907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 2923606 - 2923519
Alignment:
Q  183 ttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||| |||||| ||||||  ||||||||||  | | |||||| ||||||||||  ||| ||||||||| | ||||||||||||    
T  2923606 ttatctattgacataagtacttgaaagactgtttggaagaacttatagaaacaacttactacatgtccataagttatttttagcttat 2923519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 4534293 - 4534404
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    |||||| || ||||||| ||||| ||||||||||||||||   ||||| | ||| ||||  | || ||||| ||||||||||| |||||| | |||| ||    
T  4534293 ctgtttcgattgatttatttgagcttatctattcacataagcccttgtaaaactatttggtagaggttatagaaacaacttataacacgttcgtaagttg 4534392  T
Q  259 tttttagcttat 270  Q
     |||||||||||    
T  4534393 attttagcttat 4534404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 11039301 - 11039368
Alignment:
Q  203 ttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||||| | |||||||  |||||  |||||||| ||||||||| |||||| |||||||    
T  11039301 ttgtgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttat 11039368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 43115184 - 43115097
Alignment:
Q  183 ttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||| ||||||  |||||||||| ||||||  | || ||||  ||||||||||||||| ||||||||  |||||| |||||||    
T  43115184 ttatctattgacataatcacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttat 43115097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 48588765 - 48588723
Alignment:
Q  203 ttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    |||||||| || |||||| ||||||||||||||||||||||||    
T  48588765 ttgtgagattgcttgagagagcttatataaacaacttatgaca 48588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 1810087 - 1810026
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||||| ||||||| ||||||   ||||||||||||||| |||||| || ||||||    
T  1810087 acttgtgagactatttgagagagcttacggaaacaacttatgacatgtccatgagttgtttt 1810026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 14548681 - 14548750
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||||||||| |||||||  ||||||| |||||||  |  ||| |||||||| |||||||    
T  14548681 acttgtgagactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttat 14548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 20173811 - 20173909
Alignment:
Q  162 tttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgttt 261  Q
    |||||| ||| ||| |||||  |||||||| | ||||  ||||||||||| |||||||||  | |||  |||||||||||||| | ||||||||||||||    
T  20173811 tttggattgacttatttgagcgtatctattgaaataagcacttgtgagacagtttgagaa--cctatggaaacaacttatgactcatccataagctgttt 20173908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 29771956 - 29771887
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||| |||||||| |||  || |||||| | |||||||||| |||| ||||||||| ||||||    
T  29771956 acataaatactcgtgagactatttatgagagcttaaagaaacaacttaggacatgtccataagttgtttt 29771887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 40880912 - 40880969
Alignment:
Q  205 gtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||||||||| |||||||  ||||||||||||||| | || |||| ||||||    
T  40880912 gtgagactgtttgagagagcttatgaaaacaacttatgacatgaccgtaagttgtttt 40880969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 50016017 - 50015952
Alignment:
Q  180 agtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||||||||||  |||||| |||||||||||||||||||| | |||||  ||| ||| |||||||    
T  50016017 agtttatctattggcataaacacttgtgagactgtttgagagaacttatgaaaagaacgtatgaca 50015952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 34707457 - 34707517
Alignment:
Q  202 cttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||||||||||| | ||| |  ||||||||| ||||| ||||||||| ||||||    
T  34707457 cttgtgagactgtttgagagaacttttgaaaacaacttgtgacatgtccataagttgtttt 34707517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 43080054 - 43080130
Alignment:
Q  194 cataaatacttgtgagactgtttgagaa--agcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||| ||||||||||| |||||||  |||||||||||||  || ||||||  || |||||||||||| |||||||    
T  43080054 cataaatatttgtgagactgcttgagaaagagcttatataaaccgctaatgaca--tctataagctgttttcagcttat 43080130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 49465868 - 49465947
Alignment:
Q  172 tttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccat 252  Q
    |||| ||||| ||||| |||  |||||| |||||||||| | |||| || |||||||| ||||||||||||||| ||||||    
T  49465868 tttatttgagcttatccattagcataaacacttgtgagagt-tttgtgagagcttatagaaacaacttatgacatgtccat 49465947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 50004789 - 50004693
Alignment:
Q  175 acttgagtttatctattcacataaatacttgtgagactgtttgagaaagc-ttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||| || | ||||||  | |||| |||||||||||||  || ||||  ||||||||||||||| || | ||||||||||| |||||||    
T  50004789 acttgagtttatttactgacataagcaattgtaagactgtttgagagggccttatggaaacaacttatgacatgttcttaagctgttttcagcttat 50004693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 48157082 - 48157149
Alignment:
Q  203 ttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||||| || |||||||| |||||||||||| || |||||||||||||||| |||||||    
T  48157082 ttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttat 48157149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 33645896 - 33645990
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttg-agaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||||| || |||| ||||||||||||| ||| ||| |||||||  ||||||||||||||| ||| ||||| ||||||||| ||||    
T  33645896 ttgagtttatctattgacgtaaaaacttgtgagactggttggagagagcttatggaaacaacttatgacatgtctataagttgtttttaggttat 33645990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 25670518 - 25670615
Alignment:
Q  173 ttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||| ||||||||| ||||||   ||||||||||||||||||||| |||||  ||||||||||||||| ||  ||||  |||||| |||||||    
T  25670518 ttacttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgttaataaattgttttcagcttat 25670615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 36538025 - 36537951
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagctt 268  Q
    |||||| |||||||||| ||||||||| | |||||  ||||||||||||||| || |||||| ||||||||||||    
T  36538025 cataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttcataagttgtttttagctt 36537951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 27626084 - 27626144
Alignment:
Q  202 cttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||| |||||||||||||||||  ||||| ||||||||| |||||||| |||||||    
T  27626084 cttgtgagattgtttgagaaagcttatggaaacagcttatgacatgtccataaactgtttt 27626144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 31003045 - 31002998
Alignment:
Q  206 tgagactgtttgagaaagcttatataaacaacttatgacacgtccata 253  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  31003045 tgagactgtttgagaaagtttataaaaacaacttatgacatgtccata 31002998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 36598318 - 36598385
Alignment:
Q  203 ttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||| ||||||||| |||||||  ||||| ||||||||| || ||||||||||||| |||||||    
T  36598318 ttgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttat 36598385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 11047954 - 11047908
Alignment:
Q  224 cttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| ||||||||||||||| || |||||||||||||||||||||    
T  11047954 cttataaaaacaacttatgacatgttcataagctgtttttagcttat 11047908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 12234852 - 12234918
Alignment:
Q  204 tgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||| |||  | |||||||| ||||||||||||||| ||| |||||||||||| |||||||    
T  12234852 tgtgagactgcttggaatagcttatagaaacaacttatgacatgtctataagctgttttcagcttat 12234918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 33894737 - 33894668
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||||||| || |||||||  ||||| | ||||||| ||||||||| |||||| |||||||    
T  33894737 acttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttat 33894668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 34754746 - 34754839
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||| ||||||||| ||| ||| |||| ||||||||||||||| ||||||   ||||| ||||||||| | | ||||| |||||| |||||||    
T  34754746 ttgagcttatctattgacacaaacacttatgagactgtttgagagagcttaagaaaacatcttatgacaagcctataagttgttttcagcttat 34754839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 4966273 - 4966205
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||| ||||||||||||||||||  || |||||||| |||| |||||||| | ||||||||| ||||||    
T  4966273 catacatacttgtgagactgtttaggagagcttatagaaaccacttatgatatgtccataagttgtttt 4966205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 8427162 - 8427070
Alignment:
Q  162 tttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataa 254  Q
    |||||| ||||||| ||||| ||||||| | |||||| |||||||||||||||||| |  ||| |||  |||||||||| |||  ||||||||    
T  8427162 tttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttgggggagcctatggaaacaacttacgacgtgtccataa 8427070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 39539771 - 39539810
Alignment:
Q  231 aaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  39539771 aaacaacttatgacatgtccataagctgttttcagcttat 39539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 40428683 - 40428596
Alignment:
Q  183 ttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| || ||||||  |||||||||||| | || ||||||||||| | || |||||||||||| | |||| ||||||| |||||||    
T  40428683 ttatctgttgacataaccacttgtgagactatctgggaaagcttatacatacgacttatgacacgccgataaactgttttcagcttat 40428596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 47134747 - 47134786
Alignment:
Q  231 aaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  47134747 aaacaacttatgacacgtccataagttgttttcagcttat 47134786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 22387815 - 22387925
Alignment:
Q  160 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgt 259  Q
    |||||||| ||| ||||| ||  |||| || | ||||||| || |||||||||||||| || |||||||  |||||||||||| || ||  |||| ||||    
T  22387815 tgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactgt 22387914  T
Q  260 ttttagcttat 270  Q
    ||||| |||||    
T  22387915 ttttaacttat 22387925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 23215006 - 23214896
Alignment:
Q  160 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgt 259  Q
    |||||||| ||| ||| ||||  ||||||| |  |||||| |||| ||||||||||||||| |  ||||  |||||||||||||||  |||||||||| |    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataagctct 23214907  T
Q  260 ttttagcttat 270  Q
     || |||||||    
T  23214906 attcagcttat 23214896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 12242398 - 12242285
Alignment:
Q  157 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagc 256  Q
    |||||||| || ||||||| ||||| | ||||| | ||||||   ||||||||||||||||||| |||||||  ||||  ||||||| | | | |||||     
T  12242398 gtctgttttgattgatttatttgaggtgatctactgacataacctcttgtgagactgtttgagagagcttatgcaaacggcttatgatatgcctataagt 12242299  T
Q  257 tgtttttagcttat 270  Q
    |||||| |||||||    
T  12242298 tgttttcagcttat 12242285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 20547329 - 20547377
Alignment:
Q  180 agtttatctattcacataaatacttgtgagactgtttgagaaagcttat 228  Q
    |||||||||| | ||||||| |||||||| ||||||||||| |||||||    
T  20547329 agtttatctaatgacataaacacttgtgatactgtttgagagagcttat 20547377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 4868550 - 4868449
Alignment:
Q  160 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgt 259  Q
    |||||||| ||||||| |||| |||||||||| |||||   |||||||||||||||||||| || ||||  ||||||||||||||| ||| ||||| |||    
T  4868550 tgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttat-gaaacaacttatgacatgtcaataagttgt 4868452  T
Q  260 ttt 262  Q
    |||    
T  4868451 ttt 4868449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 27963341 - 27963399
Alignment:
Q  212 tgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||    
T  27963341 tgtttgagaaagcttatattaacagcttatgacatgtccataagttgtttttagcttat 27963399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 24968395 - 24968445
Alignment:
Q  220 aaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  24968395 aaagcttataaaaacaacttatgacatgtccataagctgtttctagcttat 24968445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 25432302 - 25432252
Alignment:
Q  220 aaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  25432302 aaagcttataaaaacaacttatgacatgtccataagctgtttctagcttat 25432252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 34536285 - 34536216
Alignment:
Q  184 tatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccata 253  Q
    |||||||| ||||||| ||||||||||||||||||||  ||||||  ||||| ||||||||| |||||||    
T  34536285 tatctattgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgtccata 34536216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 4699530 - 4699644
Alignment:
Q  156 tgtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataag 255  Q
    |||||| ||| | ||| ||| ||||||||||||| | ||||||   ||||||| ||  ||||| ||  |||||  ||||||||||||||| || ||||||    
T  4699530 tgtctgattgtattgacttatttgagtttatctaattacataagcgcttgtgatacaatttgataatacttatgaaaacaacttatgacatgttcataag 4699629  T
Q  256 ctgtttttagcttat 270  Q
    |||||||||||||||    
T  4699630 ctgtttttagcttat 4699644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 38867769 - 38867860
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| |||||| | ||||||| ||||||||  |||||||||| |||||||  ||| ||||||||| | |||||| || ||||||||||||||    
T  38867769 ttgagtctatctaatgacataaacacttgtga--ctgtttgagagagcttatggaaataacttatgatatgtccatcagttgtttttagcttat 38867860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 17631040 - 17631118
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagct 257  Q
    ||||||||||||||| ||||||| |||| | ||||| || ||||  ||||||  ||||||||||||||| |||||||||||    
T  17631040 ttgagtttatctattgacataaacacttcttagactcttagaga--gcttatggaaacaacttatgacatgtccataagct 17631118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 31517700 - 31517769
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||||||||| || | |||||  |||||||| |||||| || ||||||||||||| |||||||    
T  31517700 acttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttat 31517769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 32515377 - 32515462
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||||| | ||||||  ||||||||||||||||| || |||||||  ||||| | ||||||| ||| ||||| ||||||    
T  32515377 ttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgtttt 32515462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 44115825 - 44115926
Alignment:
Q  161 gtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtt 260  Q
    ||||||| ||| ||| ||||||||| ||| |||| ||| |||||||||||| |||||||| ||||| || ||||  || |||||| |||| || ||||||    
T  44115825 gtttggattgacttatttgagtttacctactcacttaagtacttgtgagacagtttgagagagcttgtaaaaacggctaatgacatgtccgtaggctgtt 44115924  T
Q  261 tt 262  Q
    ||    
T  44115925 tt 44115926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 4482031 - 4481971
Alignment:
Q  210 actgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||| | |||||  ||||||||||| ||| || |||||||||||||||||||||    
T  4482031 actgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttttagcttat 4481971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 8780360 - 8780428
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||||||||||| |  | ||| |||||||||  |||||||||| |||||||| |||||||||||||||    
T  8780360 ttgagtttatctaatgtcgtaactacttgtgaatctgtttgagagagcttataaaaacaacttatgaca 8780428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 11639397 - 11639445
Alignment:
Q  222 agcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||  ||||| ||||||||| ||||||||||||||||||||||||    
T  11639397 agcttatgaaaacagcttatgacatgtccataagctgtttttagcttat 11639445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 37593637 - 37593713
Alignment:
Q  194 cataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||| |||||| |||||||||| |||| || ||  | ||||||||||||| || ||||||||||||| |||||||    
T  37593637 cataaacacttgttagactgtttgggaaaactaatgaacacaacttatgacatgttcataagctgttttcagcttat 37593713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 3597199 - 3597310
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctg 258  Q
    ||||||||| ||| ||| ||||| ||||||| | | ||||  |||||||||||||||||  | || | ||| ||| ||||||||||| | |||||||||     
T  3597199 ctgtttggattgacttatttgaggttatctaatgatataaccacttgtgagactgtttggaagagttgataaaaataacttatgacatggccataagcta 3597298  T
Q  259 tttttagcttat 270  Q
    |||| |||||||    
T  3597299 ttttcagcttat 3597310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 4622172 - 4622134
Alignment:
Q  232 aacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  4622172 aacatcttatgacatgtccataagctgtttttagcttat 4622134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 5157190 - 5157140
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatga 243  Q
    ||||||| |||||||| |||||||| || |||||||| |||||||||||||    
T  5157190 acataaacacttgtgaaactgtttgggagagcttatagaaacaacttatga 5157140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 5591933 - 5591987
Alignment:
Q  208 agactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||||| |||||||  ||||| |||||||||||| ||||||| |||||    
T  5591933 agactgtttgagagagcttatgaaaacagcttatgacacgtgcataagccgtttt 5591987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 23373273 - 23373323
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtcca 251  Q
    |||||||||| |||||| || |||||||| ||||||||||||||| |||||    
T  23373273 acttgtgagattgtttgggagagcttatagaaacaacttatgacatgtcca 23373323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 6977034 - 6976973
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||| ||||||| || |||| ||  ||||||||||||||| || |||||||||||||    
T  6977034 acttgtgaggctgtttgcgagagctaatggaaacaacttatgacatgttcataagctgtttt 6976973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 24417655 - 24417712
Alignment:
Q  161 gtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttga 218  Q
    ||||||| ||| ||| ||||||||||||||| | |||| ||||||||||||| |||||    
T  24417655 gtttggattgacttatttgagtttatctattaatataagtacttgtgagactatttga 24417712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 42336725 - 42336664
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||| |||||||||||| | |||||  ||||||||||||||| ||||| ||| ||||||    
T  42336725 acttgtgcgactgtttgagataacttatgaaaacaacttatgacatgtccaaaagttgtttt 42336664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 3070078 - 3070118
Alignment:
Q  229 ataaacaacttatgacacgtccataagctgtttttagctta 269  Q
    ||||||||||||||||| || ||||||||||||| ||||||    
T  3070078 ataaacaacttatgacatgttcataagctgttttcagctta 3070118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 4202125 - 4202180
Alignment:
Q  214 tttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||| |||||||| ||||| ||||||||| ||||||||||| |||| |||||||    
T  4202125 tttgagagagcttata-aaacagcttatgacatgtccataagctattttcagcttat 4202180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 4363571 - 4363638
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||| ||||||| | |||||| ||||||||||| |||||||||  ||||||  |||||||||||||||    
T  4363571 ttgagcttatctacttacataa-tacttgtgagattgtttgagagcgcttatcgaaacaacttatgaca 4363638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 4549506 - 4549554
Alignment:
Q  206 tgagactgtttgagaaagcttatataaacaacttatgacacgtccataa 254  Q
    |||||||||||| || |||||||| ||||||||||||||| ||| ||||    
T  4549506 tgagactgtttgggagagcttatagaaacaacttatgacatgtctataa 4549554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 16980921 - 16980869
Alignment:
Q  193 acataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    |||||| ||||||||||||| ||||||| |||||||  |||||||||| ||||    
T  16980921 acataagtacttgtgagactatttgagagagcttatggaaacaacttacgaca 16980869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 17628688 - 17628648
Alignment:
Q  222 agcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||  ||||||||||||||| ||||||||||||||||    
T  17628688 agcttatggaaacaacttatgacatgtccataagctgtttt 17628648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 35080031 - 35080098
Alignment:
Q  202 cttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||| ||||  |||||||||  || |||||||||||| || ||||||||||||| |||||||    
T  35080031 cttgtgagactctttggaaaagcttatggaa-caacttatgacatgttcataagctgttttgagcttat 35080098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 35350720 - 35350684
Alignment:
Q  231 aaacaacttatgacacgtccataagctgtttttagct 267  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  35350720 aaacaacttatgacatgtccataagctgttttcagct 35350684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 9706 - 9794
Alignment:
Q  169 tgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagct 257  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||||| || ||| |||  |||||||||| ||   |||||||||||    
T  9706 tgatttatttgagtttatctactaacataaatacttgtgagactgtttgggagagcctatggaaacaacttacgatgtgtccataagct 9794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 11457232 - 11457148
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgttt 261  Q
    ||||| |||||||||  || ||| ||||||||||||||||   | |||||||  ||||||||||||||| |||||||||||||||    
T  11457232 ttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataagctgttt 11457148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 11095411 - 11095509
Alignment:
Q  157 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataag 255  Q
    |||||||||||||| |||| || || ||||||| | ||||||| |||||||| | ||||||||| | ||| |  ||||| ||||||||| |||||||||    
T  11095411 gtctgtttggactggtttatttaagcttatctactgacataaacacttgtgatattgtttgagagaacttgtggaaacagcttatgacatgtccataag 11095509  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 37611174 - 37611236
Alignment:
Q  200 tacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||| ||||||||| |||||||  ||||||||| ||||| || |||||||||||||    
T  37611174 tacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgtttt 37611236  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 37787904 - 37787966
Alignment:
Q  200 tacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    ||||||||||| ||||||||| |||||||  ||||||||| ||||| || |||||||||||||    
T  37787904 tacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgtttt 37787966  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 38047833 - 38047895
Alignment:
Q  195 ataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagct 257  Q
    |||| |||||||| ||||||||| || |||||||  ||||||||||||||| |||||||||||    
T  38047833 ataagtacttgtgtgactgtttgggagagcttatggaaacaacttatgacatgtccataagct 38047895  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 39257314 - 39257407
Alignment:
Q  161 gtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataa 254  Q
    ||||||||||  ||| || || ||||||| | ||||||  |||||||||||||| || ||||||||| | |||||||| |||||| ||||||||    
T  39257314 gtttggactggcttatttaagcttatctactaacataagcacttgtgagactgtgtgcgaaagcttagagaaacaactaatgacatgtccataa 39257407  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 29336782 - 29336699
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatg 242  Q
    ||||||||| ||| | | |||||||||||||||  || ||  ||||||||||||| |||||| |||||||  ||||||||||||    
T  29336782 ctgtttggattgaatcatttgagtttatctattggcaaaagcacttgtgagactgattgagagagcttatggaaacaacttatg 29336699  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 37526161 - 37526228
Alignment:
Q  203 ttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||||||| |||||||  | ||||| ||||||| ||  |||||||||||| |||||||    
T  37526161 ttgtgagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttat 37526228  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 37690598 - 37690665
Alignment:
Q  203 ttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||||||| |||||||  | ||||| ||||||| ||  |||||||||||| |||||||    
T  37690598 ttgtgagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttat 37690665  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 40159949 - 40159858
Alignment:
Q  180 agtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacg-tccataagctgtttttagcttat 270  Q
    |||||||||| | ||||||| |  ||||| ||||||||| | |||||| | ||||||||||||||| | | |||||||| ||||||||||||    
T  40159949 agtttatctacttacataaacatgtgtgatactgtttgaaagagcttagaaaaacaacttatgacatgtttcataagctatttttagcttat 40159858  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 35960516 - 35960454
Alignment:
Q  208 agactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||| ||||||| |||||||  || ||||||| |||| ||||||||| ||||||||||||||    
T  35960516 agactatttgagagagcttatggaagcaacttacgacatgtccataagatgtttttagcttat 35960454  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 37794677 - 37794727
Alignment:
Q  220 aaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||  ||||||||||||||| || ||||||||||||| |||||||    
T  37794677 aaagcttatgaaaacaacttatgacatgttcataagctgttttgagcttat 37794727  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 40205038 - 40205103
Alignment:
Q  204 tgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||| |||||||||| | ||||||||||| ||||| ||| |||||||| ||||||| |||||||    
T  40205038 tgtgagattgtttgagaa-gtttatataaacagcttataacatgtccataatctgttttcagcttat 40205103  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 40335791 - 40335849
Alignment:
Q  159 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttg 217  Q
    ||||||||| ||| ||| ||||||||||||| || || ||| |||||||||||||||||    
T  40335791 ctgtttggattgacttatttgagtttatctactcgcacaaacacttgtgagactgtttg 40335849  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 10907488 - 10907427
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||||||||||||||||  | |||||||  |||||||||||| || ||| ||||||||||||    
T  10907488 acttgtgagactgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgtttt 10907427  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 11297112 - 11297225
Alignment:
Q  157 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagc 256  Q
    ||||||||| | ||| ||| || || ||||||| |  |||||| |||||| ||||||||||| | |||||||  |||||||||| |||| ||| || |||    
T  11297112 gtctgtttgaattgacttatttaagcttatctagtggcataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgtcaattagc 11297211  T
Q  257 tgtttttagcttat 270  Q
    | |||| |||||||    
T  11297212 tattttcagcttat 11297225  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 12407672 - 12407717
Alignment:
Q  183 ttatctattcacataaatacttgtgagactgtttgagaaagcttat 228  Q
    ||||||||| ||||||| ||||||||||| |||||||| |||||||    
T  12407672 ttatctattgacataaacacttgtgagacggtttgagagagcttat 12407717  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 25720377 - 25720446
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    |||||||||||||| ||||| |||||||| |||||| | |||||| || ||||| ||  |||||||||||    
T  25720377 acttgtgagactgtctgagagagcttataaaaacaattcatgacatgttcataaacttcttttagcttat 25720446  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 32172763 - 32172694
Alignment:
Q  201 acttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||  ||||| || |||||||  ||||||||||||||| ||||||||||  |||| |||||||    
T  32172763 acttgtgagatagtttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttat 32172694  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 4855810 - 4855747
Alignment:
Q  196 taaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||| |||||||||||||||||||| |||||||   | |||||||||||| || || ||||||||||    
T  4855810 taaacacttgtgagactgtttgagagagcttat---agcaacttatgacatgttcagaagctgtttt 4855747  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 13781812 - 13781896
Alignment:
Q  178 tgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttt 262  Q
    |||| ||||||| | |||||| ||||||||||||||||||  | ||||| || ||| | ||||||||| || |||||| ||||||    
T  13781812 tgagcttatctactaacataagtacttgtgagactgtttggtagagcttgtagaaatagcttatgacatgtgcataagttgtttt 13781896  T

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Target: scaffold0608 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 9606 - 9666
Alignment:
Q  210 actgtttgagaaagcttatataaacaacttatgacacgtccataagctgtttttagcttat 270  Q
    ||||||||||| | |||||  ||||||||||| ||| || |||||||||||||||||||||    
T  9606 actgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttttagcttat 9666  T

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Target: scaffold0426 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 4350 - 4282
Alignment:
Q  177 ttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttatataaacaacttatgaca 245  Q
    ||||||||||||| | | | ||||| |||||||||||||||| |||| ||||  |||||||||||||||    
T  4350 ttgagtttatctactgataaaaatatttgtgagactgtttgaaaaagtttatggaaacaacttatgaca 4282  T

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