View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8303_low_8 (Length: 248)

Name: NF8303_low_8
Description: NF8303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8303_low_8
NF8303_low_8
[»] chr1 (11 HSPs)
chr1 (9-248)||(47758812-47759051)
chr1 (9-248)||(47711914-47712153)
chr1 (9-248)||(47716665-47716904)
chr1 (47-248)||(47744429-47744630)
chr1 (61-248)||(6524857-6525044)
chr1 (88-248)||(6498116-6498276)
chr1 (99-246)||(6503437-6503584)
chr1 (99-232)||(6511071-6511204)
chr1 (88-248)||(47774492-47774652)
chr1 (143-210)||(47770639-47770706)
chr1 (105-210)||(6515516-6515621)
[»] chr5 (5 HSPs)
chr5 (98-248)||(27369176-27369326)
chr5 (107-248)||(28874930-28875071)
chr5 (88-248)||(28829324-28829484)
chr5 (107-248)||(28860360-28860501)
chr5 (88-211)||(28855038-28855161)
[»] scaffold0341 (2 HSPs)
scaffold0341 (99-246)||(5119-5266)
scaffold0341 (99-232)||(12752-12884)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 47759051 - 47758812
Alignment:
Q  9 ttagatggacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcagtcaa 108  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47759051 ttagatgaacatcacattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcagtcaa 47758952  T
Q  109 aaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttggt 208  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47758951 aaggttgtcaacaaattcaggacagggggatgttgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttggt 47758852  T
Q  209 ttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  47758851 ttttgtctggaaggaagagaaagattgcttgtttatgaat 47758812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 47712153 - 47711914
Alignment:
Q  9 ttagatggacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcagtcaa 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712153 ttagatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcagtcaa 47712054  T
Q  109 aaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttggt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47712053 aaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttggt 47711954  T
Q  209 ttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    |||||||| | ||||||||||||||||||| | |||||||    
T  47711953 ttttgtctagaaggaagagaaagattgcttatctatgaat 47711914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 47716904 - 47716665
Alignment:
Q  9 ttagatggacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcagtcaa 108  Q
    ||||||| ||||||||||||||||| ||||  | ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||  ||||    
T  47716904 ttagatgaacatcacattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggacaagtgattgcgatcaa 47716805  T
Q  109 aaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttggt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47716804 aaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagtttgactacttggt 47716705  T
Q  209 ttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    |||||||| | ||||||||||||||||||| | |||||||    
T  47716704 ttttgtctagaaggaagagaaagattgcttttctatgaat 47716665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 47744630 - 47744429
Alignment:
Q  47 ttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaat 146  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47744630 ttatacagaaatgaaatatatttgcagggtatactcgccggtggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaat 47744531  T
Q  147 ttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttggtttttgtctggcaggaagagaaagattgcttgtttatga 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  47744530 ttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatga 47744431  T
Q  247 at 248  Q
    ||    
T  47744430 at 47744429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 6524857 - 6525044
Alignment:
Q  61 aatatatttgcagggtatacttgccggtggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtg 160  Q
    ||||||||| ||||||| |||  ||  ||||||||  ||||  |||||||||||||| |   |||| || ||||| ||| | |||||||||||||||||     
T  6524857 aatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagta 6524956  T
Q  161 cttttagtcgctaagcttcaacatcgaaatttagttcgactacttggtttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
     ||||||| ||||| |||||||||||||| |||||| | ||||||||||| ||| | | ||||||||||||| | ||||| |||||||    
T  6524957 gttttagtggctaaacttcaacatcgaaacttagttaggctacttggtttctgtatagaaggaagagaaagactacttgtatatgaat 6525044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 6498276 - 6498116
Alignment:
Q  88 tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 187  Q
    ||||||||  ||||| || |||||||||||||  | ||| |||||||| |||   || ||||||||||| || ||||| || |||||||||||||| |||    
T  6498276 tggacaagagattgctgttaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccga 6498177  T
Q  188 aatttagttcgactacttggtttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    ||||||||| ||||||| ||||| |  || | ||||||||||||| | ||||| |||||||    
T  6498176 aatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaat 6498116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 6503584 - 6503437
Alignment:
Q  99 ttgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcg 198  Q
    |||| ||||||||||| ||||  ||||| |||||||| |||   || ||||||||||||||| ||||||| ||||| ||||||||  ||||| ||||| |    
T  6503584 ttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacagaaatctagttag 6503485  T
Q  199 actacttggtttttgtctggcaggaagagaaagattgcttgtttatga 246  Q
    | |||| |||||||| || | ||||||||||||| | ||||| |||||    
T  6503484 attactcggtttttgcctagaaggaagagaaagacttcttgtatatga 6503437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 6511204 - 6511071
Alignment:
Q  99 ttgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcg 198  Q
    |||| ||||||||||| ||||  ||||| |||||||| ||| | || ||||||||||||||  ||||||| ||||| |||||||| |||||||||||  |    
T  6511204 ttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagtatttttagtggctaaacttcaacaccgaaatttagtaag 6511105  T
Q  199 actacttggtttttgtctggcaggaagagaaaga 232  Q
    | |||| ||||| || || | |||||||||||||    
T  6511104 attactcggtttctgcctagaaggaagagaaaga 6511071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 47774492 - 47774652
Alignment:
Q  88 tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 187  Q
    ||||||| | ||||| |||||||| ||||| | | |||| |  ||||| ||| | |||||||| |||||||| |||||||| || || ||||||||||||    
T  47774492 tggacaaatgattgcggtcaaaagattgtccaaagattctgaccaaggagatgtggaatttaaaaatgaagtacttttagtagccaaacttcaacatcga 47774591  T
Q  188 aatttagttcgactacttggtttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    ||||||||| | |||||||||||  || | | ||| ||||||| | ||||| |||||||||    
T  47774592 aatttagttaggctacttggtttcagtttagaagggagagaaaaactgcttatttatgaat 47774652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 47770639 - 47770706
Alignment:
Q  143 gaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttggttt 210  Q
    |||||||| ||||||||  | ||||| || |||||||||||||||||||||||| |||| ||||||||    
T  47770639 gaatttaaaaatgaagtattattagtagccaagcttcaacatcgaaatttagttagacttcttggttt 47770706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 6515621 - 6515516
Alignment:
Q  105 tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactact 204  Q
    |||||||||| ||||  ||||| |||||||| ||| | || ||||||||||| ||| ||||  | ||||| |||||||| |||||||||||| || ||||    
T  6515621 tcaaaaggttatcaatgaattctggacaaggagatctagagtttaagaatgaggtgtttttcctggctaaacttcaacaccgaaatttagttagattact 6515522  T
Q  205 tggttt 210  Q
     |||||    
T  6515521 cggttt 6515516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 248
Target Start/End: Complemental strand, 27369326 - 27369176
Alignment:
Q  98 attgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttc 197  Q
    ||||| || |||||||||||||||||||| |  ||||| ||| |||| ||||| |||||||| |||||||| || || ||||||||||||||| |||||     
T  27369326 attgctgtgaaaaggttgtcaacaaattctgaccaaggagatgttgagtttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatctagtta 27369227  T
Q  198 gactacttggtttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    | ||||||||||| ||||| | ||| ||||||||| | ||| |||||||||    
T  27369226 ggctacttggtttctgtctagaagggagagaaagactacttatttatgaat 27369176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 28875071 - 28874930
Alignment:
Q  107 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttg 206  Q
    ||||||||||| |  ||||| || ||||| ||||| |||||||||||||||||||||||| | || || |||||||| || ||||| ||| |||||||||    
T  28875071 aaaaggttgtccatgaattctggccaaggagatatagaatttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttggttagactacttg 28874972  T
Q  207 gtttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    |||||  | | | ||| ||||||||| | ||||| |||||||    
T  28874971 gttttactattgaagggagagaaagactacttgtctatgaat 28874930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 28829484 - 28829324
Alignment:
Q  88 tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 187  Q
    ||||||||| ||||| || |||||||| || | |||||| || ||||| ||| | ||||||||||| ||||| | ||| || || || |||||||| |||    
T  28829484 tggacaagtgattgcggtgaaaaggttatccataaattctggtcaaggagatctagaatttaagaacgaagtacgtttggtggccaaacttcaacaccga 28829385  T
Q  188 aatttagttcgactacttggtttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    ||||||||| |||| |||||||||  | | | ||| ||||||||||| ||||| |||||||    
T  28829384 aatttagttagactccttggttttactgttgaagggagagaaagattacttgtctatgaat 28829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 28860501 - 28860360
Alignment:
Q  107 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttg 206  Q
    ||||||||||| |  ||||| || ||||| ||||  || ||||||||||||||||||||| | || || |||||||| || ||||||||| |||||||||    
T  28860501 aaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttagttagactacttg 28860402  T
Q  207 gtttttgtctggcaggaagagaaagattgcttgtttatgaat 248  Q
    |||||  | | | ||| ||||||||| | ||||| |||||||    
T  28860401 gttttactattgaagggagagaaagactacttgtctatgaat 28860360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 28855161 - 28855038
Alignment:
Q  88 tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 187  Q
    ||||||||| ||||| |||||||||||||| |  ||||| || ||||| ||| | ||||||||||||||| |  | ||  | ||||| |||||||||| |    
T  28855161 tggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctaaacttcaacatcaa 28855062  T
Q  188 aatttagttcgactacttggtttt 211  Q
    ||||||||| |  |||||||||||    
T  28855061 aatttagttaggttacttggtttt 28855038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 5266 - 5119
Alignment:
Q  99 ttgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcg 198  Q
    |||| ||||||||||| ||||  ||||| |||||||| |||   || ||||||||||||||| ||||||| ||||| ||||||||  ||||| ||||| |    
T  5266 ttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacagaaatctagttag 5167  T
Q  199 actacttggtttttgtctggcaggaagagaaagattgcttgtttatga 246  Q
    | |||| |||||||| || | ||||||||||||| | ||||| |||||    
T  5166 attactcggtttttgcctagaaggaagagaaagacttcttgtatatga 5119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 12884 - 12752
Alignment:
Q  99 ttgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcg 198  Q
    |||| ||||||||||| ||||  ||||| |||||||| ||| | || ||||||||||||||  ||||||| ||||| |||||||| |||||||||||  |    
T  12884 ttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagta-ttttagtggctaaacttcaacaccgaaatttagtaag 12786  T
Q  199 actacttggtttttgtctggcaggaagagaaaga 232  Q
    | |||| ||||| || || | |||||||||||||    
T  12785 attactcggtttctgcctagaaggaagagaaaga 12752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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