View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8303_low_9 (Length: 244)
Name: NF8303_low_9
Description: NF8303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8303_low_9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 31915751 - 31915520
Alignment:
| Q |
13 |
acatcattcattcaccagtagaccagttagtgaaaatacttagaatcatgataatcttgacatgacgtaaaattaggagctcaactcaatcatacctcaa |
112 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31915751 |
acatcattcattcaccagtagaccagttggtgaaaatacttagaatcatgataatcttggcatgacgtaaaattaggagctcaactcaatcatacctcaa |
31915652 |
T |
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| Q |
113 |
ttaagactggtctttgttcttttatagcaatttcacgtgcggtgtgaactgtactataaacagctagtgcatcatttccatctactctgatactccatat |
212 |
Q |
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| T |
31915651 |
ttaagactggtctttgttcttttatagcaatttcacgtgcggtatgaactgcactataaacagcaagtgcatcatttccatctactctgatactccatat |
31915552 |
T |
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| Q |
213 |
tccataagcttgacctttcaccacaataccat |
244 |
Q |
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| T |
31915551 |
tccataagcttgacctttcaccacaataccat |
31915520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 40664351 - 40664127
Alignment:
| Q |
20 |
tcattcaccagtagaccagttagtgaaaatacttagaatcatgataatcttgacatgacgtaaaattaggagctcaactcaatcatacctcaattaagac |
119 |
Q |
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|||||||||| ||| ||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||| | ||||||||||| |||||||| |
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| T |
40664351 |
tcattcaccatgagatcagttagtgaaaatatttagaatcatgataatcttagcttgacgtgaaattaggagctcaagttaatcatacctcgattaagac |
40664252 |
T |
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| Q |
120 |
tggtctttgttcttttatagcaatttcacgtgcggtgtgaactgtactataaacagctagtgcatcatttccatctactctgatactccatattccataa |
219 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
40664251 |
tggtctttgttcttttatagcaatttcacgtgcagtatgaactgcactataaacagcaagtgcatcatttccatctactcgaatactccatattccataa |
40664152 |
T |
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| Q |
220 |
gcttgacctttcaccacaataccat |
244 |
Q |
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| T |
40664151 |
gcttgacctttcaccacaataccat |
40664127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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