View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8304_high_3 (Length: 268)
Name: NF8304_high_3
Description: NF8304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8304_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 18052503 - 18052279
Alignment:
| Q |
27 |
gtttgactcattgatgaatttttcagtagagaaatacactaataaaatcataaagacaatttaaataaaatgaataccttagatttattaaagacacttt |
126 |
Q |
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| T |
18052503 |
gtttgactcattgatgaatttttcagtagagaaatacactaataaaatcataaagacaatttaaatacaatgaataccttagatttattaaagacacttt |
18052404 |
T |
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| Q |
127 |
gaatatcacagtttgtgggagatgttccattaatattgaaactaggcctgagtccataaatagtaaaatcggccgcaggttttccggttttcggataaca |
226 |
Q |
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| T |
18052403 |
gaatatcacagtttgtgggagatgttccattaatattgaaactaggcctgagtccataaatagtaaaatctgccgccggtttaccggttttcggataaca |
18052304 |
T |
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| Q |
227 |
gcagcccagttttgagtcacagtat |
251 |
Q |
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| T |
18052303 |
gcagcctagttttgagtcacagtat |
18052279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 248
Target Start/End: Complemental strand, 18034713 - 18034567
Alignment:
| Q |
99 |
aataccttagatttattaaagacactttgaatatcacagtttgtgggagatgttccattaatattgaaactaggcctgagtccataaatagtaaaatcgg |
198 |
Q |
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| T |
18034713 |
aataccttagatttatcaaagacacttttaatattacagtttgagggagatgatccat---cattgaagttaggcctaagtccagcaatggtaaaatctg |
18034617 |
T |
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| Q |
199 |
ccgcaggttttccggttttcggataacagcagcccagttttgagtcacag |
248 |
Q |
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| T |
18034616 |
ctgtcggttttccggttttcggaaaacagcagctctgctttgagtcacag |
18034567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 18047279 - 18047233
Alignment:
| Q |
94 |
aaatgaataccttagatttattaaagacactttgaatatcacagttt |
140 |
Q |
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| T |
18047279 |
aaattaataccttagatttatcaaagacactatgaatatcacagttt |
18047233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 18028818 - 18028758
Alignment:
| Q |
191 |
aaaatcggccgcaggttttccggttttcggataacagcagcccagttttgagtcacagtat |
251 |
Q |
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| T |
18028818 |
aaaatctgccgtcggttttccggttttcggataacagcagctctgctttgtgtcacagtat |
18028758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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