View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8304_low_2 (Length: 452)

Name: NF8304_low_2
Description: NF8304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8304_low_2
NF8304_low_2
[»] chr8 (5 HSPs)
chr8 (145-430)||(27497918-27498200)
chr8 (116-372)||(27496155-27496404)
chr8 (14-44)||(27497892-27497922)
chr8 (386-430)||(16247014-16247058)
chr8 (386-430)||(19443843-19443887)
[»] chr1 (3 HSPs)
chr1 (386-430)||(27579920-27579964)
chr1 (386-430)||(44915895-44915939)
chr1 (385-430)||(31692247-31692292)
[»] chr3 (4 HSPs)
chr3 (395-434)||(29776364-29776403)
chr3 (386-434)||(105708-105755)
chr3 (386-430)||(20464757-20464801)
chr3 (394-430)||(52115806-52115842)
[»] chr4 (8 HSPs)
chr4 (388-430)||(43157182-43157224)
chr4 (386-427)||(27360032-27360073)
chr4 (386-435)||(29589027-29589075)
chr4 (389-430)||(37869087-37869127)
chr4 (386-430)||(12493605-12493649)
chr4 (386-434)||(35338697-35338744)
chr4 (386-430)||(36161995-36162039)
chr4 (386-430)||(44596932-44596976)
[»] chr2 (5 HSPs)
chr2 (400-434)||(5930824-5930858)
chr2 (400-434)||(17267791-17267825)
chr2 (388-430)||(30399824-30399866)
chr2 (386-427)||(12553962-12554003)
chr2 (386-430)||(30923250-30923294)
[»] scaffold0238 (1 HSPs)
scaffold0238 (400-433)||(15360-15393)
[»] chr7 (3 HSPs)
chr7 (389-434)||(19895353-19895397)
chr7 (389-430)||(42491107-42491148)
chr7 (386-430)||(34899399-34899443)
[»] chr6 (8 HSPs)
chr6 (386-427)||(34185486-34185527)
chr6 (386-434)||(1944461-1944508)
chr6 (386-434)||(5545081-5545128)
chr6 (386-430)||(6295901-6295944)
chr6 (386-430)||(6302711-6302754)
chr6 (386-430)||(16419416-16419460)
chr6 (386-430)||(23843090-23843133)
chr6 (386-430)||(31851673-31851717)
[»] chr5 (2 HSPs)
chr5 (386-427)||(34000020-34000060)
chr5 (386-434)||(4726669-4726716)
[»] scaffold0157 (1 HSPs)
scaffold0157 (386-430)||(26828-26872)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 145 - 430
Target Start/End: Original strand, 27497918 - 27498200
Alignment:
Q  145 aatataaccattaaaagaatattatttttgcagactcattggacctataggtgatttcatatatcaaaatcattcccatatttctta--agatggaagaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  27497918 aatataaccattaaaagaatattatttttgcagactcattggacttataggtgatttcatatatcaaaataattcccatatttcttataagatggaagaa 27498017  T
Q  243 attaaatatttatcaagtactaatgttaaaacttataaataattaatgtgtacatagagatttgacacttatatggagagtaaatatgagtatatactca 342  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  ||||||||    
T  27498018 attgaatatttattaagtactaatgttaaaacttataaataattaatgtgtacatagagactcgacacttatatggagagtaaatatgag--tatactca 27498115  T
Q  343 tttgatttccgtttaatcttcggaatgttannnnnnnnnnctcacaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||||||||||| || |||||           | |||||||||||||||||||||||  ||||||||||||||||||||    
T  27498116 tttgatttccgtttaatcttctgagtgttatttttttt---tgacaaaaataaaataatattcattcattcaaattgatagagtacat 27498200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 372
Target Start/End: Original strand, 27496155 - 27496404
Alignment:
Q  116 ttagaggtggtttatggtagatcatgaataatataaccattaaaagaatattatttttgcagactcattgga-cctataggtgatttcatatatcaaaat 214  Q
    ||||| |||||||||||| |||||||||| ||   ||||||| |||||||||||||||||||| |||||||| | | ||| ||||| |||       ||     
T  27496155 ttagaagtggtttatggtggatcatgaatgatg--accattagaagaatattatttttgcagattcattggatcttgtagttgattccat-------aac 27496245  T
Q  215 cattcccatatttct--taagatggaagaaattaaatatttatcaagtactaatgttaaaacttataaataattaatgtgtacata-gagatttgacact 311  Q
    ||||||||| ||| |  |||||| |||| |||| ||| ||||| ||||||||| ||||||| || ||||||| ||||||||||||| |||| | | ||||    
T  27496246 cattcccatgtttattataagattgaaggaattgaatgtttattaagtactaacgttaaaaattgtaaataagtaatgtgtacatacgagaatcggcact 27496345  T
Q  312 tatatggagagtaaatatgagtatatactcatttgatttccgtttaatcttcggaatgtta 372  Q
     |||  ||||||||| |||||  ||||||| |||||||| | |||| |||  |||||||||    
T  27496346 catactgagagtaaaaatgag--tatactcgtttgatttacatttattctcgggaatgtta 27496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 27497892 - 27497922
Alignment:
Q  14 attatacttgtactcacatatggataaatat 44  Q
    |||||||||||||||||||||||||||||||    
T  27497892 attatacttgtactcacatatggataaatat 27497922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 16247014 - 16247058
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||| |||||||||| ||||||||||| || |||||    
T  16247014 acaaaaataaaatgatattcatttattcaaattgatggaatacat 16247058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 19443843 - 19443887
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||  |||||||||  ||||||||||||||||||||    
T  19443843 acaaaaataaaacgatattcattcattcaaattgatagagtacat 19443887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 27579920 - 27579964
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  27579920 acaaaaataaaataatattcatttattcaaattgatagagtacat 27579964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 44915939 - 44915895
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  44915939 acaaaaataaaatgatattcattcattcaaattgatagagtacat 44915895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 31692247 - 31692292
Alignment:
Q  385 cacaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||| |||||| |||||||||| |||||||||||||| |||||    
T  31692247 cacaaaagtaaaatgatattcatttattcaaattgatagaatacat 31692292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 434
Target Start/End: Original strand, 29776364 - 29776403
Alignment:
Q  395 aaataatattcatttcttcaaattgatagagtacattgat 434  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  29776364 aaatgatattcatttattcaaattgatagagtacattgat 29776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 105708 - 105755
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacattgat 434  Q
    |||||||||||  ||||||||||  ||||||||||||||||||||||||    
T  105708 acaaaaataaac-aatattcattcattcaaattgatagagtacattgat 105755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 20464757 - 20464801
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||| ||||| |||||||||  ||||||||||||||||||||    
T  20464757 acaaaaacaaaatgatattcattcattcaaattgatagagtacat 20464801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 52115806 - 52115842
Alignment:
Q  394 aaaataatattcatttcttcaaattgatagagtacat 430  Q
    |||||||||||||||| |||||||||||||| |||||    
T  52115806 aaaataatattcatttattcaaattgatagaatacat 52115842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 430
Target Start/End: Complemental strand, 43157224 - 43157182
Alignment:
Q  388 aaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||    
T  43157224 aaaaaaaaaatgatattcatttattcaaattgatagagtacat 43157182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 27360032 - 27360073
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagta 427  Q
    ||||||||||||| |||||||||  |||||||||||||||||    
T  27360032 acaaaaataaaatgatattcattctttcaaattgatagagta 27360073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 29589027 - 29589075
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacattgatg 435  Q
    ||||||||||| |||||||||||  ||||||||||| |||||||||||||    
T  29589027 acaaaaataaa-taatattcattcattcaaattgatggagtacattgatg 29589075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 37869087 - 37869127
Alignment:
Q  389 aaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  37869087 aaaataaaata-tattcatttattcaaattgatagagtacat 37869127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 12493649 - 12493605
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||| |||||||||  || |||||||||||||||||    
T  12493649 acaaaaataaaatgatattcattcattaaaattgatagagtacat 12493605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 35338744 - 35338697
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacattgat 434  Q
    ||||||||||| || ||||||||| || |||||||||||||||||||||    
T  35338744 acaaaaataaatta-tattcatttatttaaattgatagagtacattgat 35338697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 36162039 - 36161995
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||| |||||||||  |||||||||||||| |||||    
T  36162039 acaaaaataaaatgatattcattcattcaaattgatagaatacat 36161995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 44596976 - 44596932
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||| |||| ||||||||||  ||||||||||||||||||||    
T  44596976 acaaaaacaaaacaatattcattaattcaaattgatagagtacat 44596932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 434
Target Start/End: Complemental strand, 5930858 - 5930824
Alignment:
Q  400 atattcatttcttcaaattgatagagtacattgat 434  Q
    |||||||||| ||||||||||||||||||||||||    
T  5930858 atattcatttattcaaattgatagagtacattgat 5930824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 434
Target Start/End: Original strand, 17267791 - 17267825
Alignment:
Q  400 atattcatttcttcaaattgatagagtacattgat 434  Q
    |||||||||| ||||||||||||||||||||||||    
T  17267791 atattcatttattcaaattgatagagtacattgat 17267825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 30399824 - 30399866
Alignment:
Q  388 aaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||    
T  30399824 aaaaataaaatgatattcatttattcaaattgatcgagtacat 30399866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 12553962 - 12554003
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagta 427  Q
    ||||||||||||| |||||||||  |||||||||||||||||    
T  12553962 acaaaaataaaatgatattcattcattcaaattgatagagta 12554003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 30923250 - 30923294
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||| ||||| |||||||||  ||||||||||||||||||||    
T  30923250 acaaaaacaaaatgatattcattcattcaaattgatagagtacat 30923294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Original strand, 15360 - 15393
Alignment:
Q  400 atattcatttcttcaaattgatagagtacattga 433  Q
    |||||||||| |||||||||||||||||||||||    
T  15360 atattcatttattcaaattgatagagtacattga 15393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 19895353 - 19895397
Alignment:
Q  389 aaaataaaataatattcatttcttcaaattgatagagtacattgat 434  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||    
T  19895353 aaaataaaa-aatattcattcattcaaattgatagagtacattgat 19895397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 42491148 - 42491107
Alignment:
Q  389 aaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||| ||||||||||  ||||||||||||||||||||    
T  42491148 aaaataaaaaaatattcattcattcaaattgatagagtacat 42491107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 34899399 - 34899443
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||| ||||| |||  ||||||||||||||||||||    
T  34899399 acaaaaataaaatgatatttattcattcaaattgatagagtacat 34899443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 34185486 - 34185527
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagta 427  Q
    ||||||||||||| |||||||||  |||||||||||||||||    
T  34185486 acaaaaataaaatgatattcattcattcaaattgatagagta 34185527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 1944508 - 1944461
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacattgat 434  Q
    ||||||||||| | |||||||||| | ||||||||||||||||||||||    
T  1944508 acaaaaataaa-tgatattcatttatccaaattgatagagtacattgat 1944461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 5545128 - 5545081
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacattgat 434  Q
    ||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  5545128 acaaaaataaa-tgatattcattcattcaaattgatagagtacattgat 5545081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 6295901 - 6295944
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||    
T  6295901 acaaaaataaa-taatattcattcattcaaattgatagagtacat 6295944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 6302711 - 6302754
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||    
T  6302711 acaaaaataaa-taatattcattcattcaaattgatagagtacat 6302754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 16419460 - 16419416
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||| |||||||||| |||||||||| ||| |||||    
T  16419460 acaaaaataaaatgatattcatttattcaaattgagagattacat 16419416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 23843090 - 23843133
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||    
T  23843090 acaaaaataaa-taatattcattcattcaaattgatagagtacat 23843133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 31851673 - 31851717
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||| |||||||||||||||  |||||||||||||| |||||    
T  31851673 acaaaaacaaaataatattcattcattcaaattgatagaatacat 31851717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 34000060 - 34000020
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagta 427  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  34000060 acaaaaataaa-taatattcatttattcaaattgatagagta 34000020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 4726669 - 4726716
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacattgat 434  Q
    ||||||||||| | |||||||||  ||||||||||||||||||||||||    
T  4726669 acaaaaataaa-tgatattcattcattcaaattgatagagtacattgat 4726716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 26828 - 26872
Alignment:
Q  386 acaaaaataaaataatattcatttcttcaaattgatagagtacat 430  Q
    ||||||||||||| |||||||||  || |||||||||||||||||    
T  26828 acaaaaataaaatgatattcattcattaaaattgatagagtacat 26872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University