View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8304_low_3 (Length: 352)
Name: NF8304_low_3
Description: NF8304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8304_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 12683535 - 12683212
Alignment:
| Q |
18 |
cacctgttgctgtggaggccactgctgctccggctgaaccatcaacggtgccatcatcgttccctcaggcctcgacgcagcagcagctgcaccctccacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12683535 |
cacctgttgctgtggaggccactgctgctccggctgaaccatcaacggtgccatcatcgttccctcaggcctcgacgcagcagcagctgcaccctccacc |
12683436 |
T |
|
| Q |
118 |
ttgttcttctgcctgtatagagcatcaagttggtgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12683435 |
ttgttcttctgcctgtatagagcatcaagttggtgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaat |
12683336 |
T |
|
| Q |
218 |
acttgttaatgttctcccatttctctttgcacctctttgcattcctattgtaccccattttcttcatcaaccctgaaatctcctcccataatggcccttt |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12683335 |
acttgttaatgttttcccatttctctttgcacctctttgcattcctattgtaccccattttcttcatcaaccctgaaatctcctcccataatggcccttt |
12683236 |
T |
|
| Q |
318 |
aggtccattctcttggtacttcat |
341 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
12683235 |
aggtccattctcttggtacttcat |
12683212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 338
Target Start/End: Original strand, 44553311 - 44553498
Alignment:
| Q |
151 |
tgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttgttaatgttctcccatttctctttgcacc |
250 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||| ||||| || || |||||||||||||| |||||||| || ||||||||||| |||||||||| |
|
|
| T |
44553311 |
tgaaaataaggacatgtctttgaatcttcgggtctctttttgttactctctttcactttcttgaagtacttgtttatattctcccatttttctttgcacc |
44553410 |
T |
|
| Q |
251 |
tctttgcattcctattgtaccccattttcttcatcaaccctgaaatctcctcccataatggccctttaggtccattctcttggtactt |
338 |
Q |
| |
|
| ||||||||||||||||| || | |||||||| || ||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
44553411 |
tttttgcattcctattgtaaccgaggttcttcattgctaaagatatctcctcccatagaggaccttttggtccattctcttggtactt |
44553498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 44533734 - 44533654
Alignment:
| Q |
189 |
cttgttgctttccttcactttcttgaaatacttgttaatgttctcccatttctctttgcacctctttgcattcctattgta |
269 |
Q |
| |
|
|||||| |||||||||| ||||||| | || ||||| || ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
44533734 |
cttgttactttccttcattttcttgtagtatttgttgatattctcccatttttctttgcacctttttgcattcctattgta |
44533654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 36127420 - 36127466
Alignment:
| Q |
212 |
tgaaatacttgttaatgttctcccatttctctttgcacctctttgca |
258 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
36127420 |
tgaaatacttgttgatattctcccacttctctttgcatctctttgca |
36127466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 44553171 - 44553205
Alignment:
| Q |
35 |
gccactgctgctccggctgaaccatcaacggtgcc |
69 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
44553171 |
gccattgctgctccggctgaaccatcaacggtgcc |
44553205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University