View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8305_high_1 (Length: 750)

Name: NF8305_high_1
Description: NF8305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8305_high_1
NF8305_high_1
[»] chr5 (24 HSPs)
chr5 (148-740)||(13855611-13856191)
chr5 (158-578)||(10209672-10210090)
chr5 (179-578)||(10109027-10109445)
chr5 (271-569)||(12104608-12104903)
chr5 (171-411)||(10212236-10212475)
chr5 (179-411)||(10105801-10106032)
chr5 (179-412)||(10102715-10102948)
chr5 (1-116)||(13856221-13856335)
chr5 (365-543)||(10215984-10216160)
chr5 (199-400)||(12109329-12109531)
chr5 (179-360)||(9660199-9660380)
chr5 (422-578)||(10105596-10105750)
chr5 (619-714)||(10108843-10108937)
chr5 (260-412)||(9674763-9674918)
chr5 (422-566)||(9660489-9660631)
chr5 (422-578)||(10212527-10212681)
chr5 (422-548)||(12109599-12109723)
chr5 (619-699)||(10210184-10210263)
chr5 (242-322)||(10215906-10215986)
chr5 (268-320)||(37278735-37278787)
chr5 (449-549)||(9674994-9675091)
chr5 (264-318)||(3467667-3467721)
chr5 (1-50)||(13865455-13865504)
chr5 (172-207)||(10215869-10215904)
[»] chr1 (12 HSPs)
chr1 (219-397)||(10542318-10542496)
chr1 (188-320)||(45151996-45152128)
chr1 (213-326)||(42202383-42202496)
chr1 (213-326)||(42211251-42211364)
chr1 (188-320)||(45316380-45316512)
chr1 (218-326)||(2176315-2176423)
chr1 (216-326)||(42409594-42409704)
chr1 (254-320)||(43014361-43014427)
chr1 (238-326)||(42217251-42217339)
chr1 (264-320)||(42417644-42417700)
chr1 (213-316)||(51795024-51795127)
chr1 (499-578)||(10542173-10542252)
[»] chr8 (5 HSPs)
chr8 (179-320)||(31555089-31555230)
chr8 (179-320)||(31878239-31878380)
chr8 (214-357)||(31558209-31558352)
chr8 (269-322)||(13568429-13568482)
chr8 (265-318)||(4042245-4042298)
[»] chr7 (6 HSPs)
chr7 (179-320)||(3647029-3647170)
chr7 (179-314)||(3649484-3649619)
chr7 (179-314)||(3657601-3657736)
chr7 (265-318)||(3641211-3641264)
chr7 (260-360)||(3645021-3645119)
chr7 (259-306)||(19523283-19523330)
[»] chr3 (3 HSPs)
chr3 (213-326)||(46446211-46446324)
chr3 (184-320)||(21884021-21884157)
chr3 (271-323)||(35717255-35717307)
[»] chr4 (6 HSPs)
chr4 (179-320)||(17889425-17889566)
chr4 (213-326)||(25698805-25698918)
chr4 (254-310)||(36790848-36790904)
chr4 (259-316)||(49588194-49588251)
chr4 (269-308)||(20918686-20918725)
chr4 (264-315)||(46362544-46362595)
[»] chr6 (2 HSPs)
chr6 (259-316)||(33891599-33891656)
chr6 (268-320)||(27868671-27868723)
[»] chr2 (3 HSPs)
chr2 (254-323)||(26568338-26568407)
chr2 (259-316)||(5900532-5900589)
chr2 (259-311)||(43633443-43633495)


Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 148 - 740
Target Start/End: Complemental strand, 13856191 - 13855611
Alignment:
Q  148 gcctgcttagaaagagcaagattagaataggaaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgcta 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856191 gcctgcttagaaagagcaagattagaataggaaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgcta 13856092  T
Q  248 atagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttc 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||    
T  13856091 atagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgcttgtaagaggtagaggtcctttc 13855992  T
Q  348 tttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctcctt 447  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||||||    |||||    
T  13855991 tttttatatgtgaactgcatagtttag-tttatgaattggttgatgtgggactctatcagacacccacctattctcacatatttcccctat----tcctt 13855897  T
Q  448 gacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccat 547  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855896 gacacatttatttgaaatgtttaatctttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccat 13855797  T
Q  548 tccatgaagcttttcttccaaaagaaagagagacaagagtgagaggatttgatccctattatgtatatgagatatccttaacaaaatacttaacagtatt 647  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||    
T  13855796 tcaatgaagcttttcttccaaaagaaagagagacaagagtgagaggatttgatccctattat-------atatatccttaacaaaatacttaacagtatt 13855704  T
Q  648 aacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatcnnnnnnncccttaagttggtcctttg 740  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  13855703 aacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatctttttttcccttaagttggtcctttg 13855611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 158 - 578
Target Start/End: Original strand, 10209672 - 10210090
Alignment:
Q  158 aaagagcaagattagaataggaaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgc 257  Q
    ||||||||||||| |||||| |||  ||||||||||||||||| |||||||  | ||||| ||||| ||||||||||  ||||||| || || |  ||||    
T  10209672 aaagagcaagattggaatagaaaatcattgaactaaaattgcagagccctccataaagagaactcttccaaaaactaacgtatgccactcattgtgacgc 10209771  T
Q  258 tcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||| |   | ||||||| ||||||||||||    
T  10209772 tcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtgattttaacaaggataggtcctatctttttatatg 10209871  T
Q  358 tgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacattta 457  Q
      | ||||||||||||| |||||||||||| |||||||||||| ||| |||||| || | ||  ||| || |||||||| ||| |||||| |||||||||    
T  10209872 caagctgcatagtttag-tttatgaattgggcgatgtgggactttattagacactcacctgtagtcatatgtttcccctgttcactccttcacacattta 10209970  T
Q  458 tttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccattccatgaagc 557  Q
    ||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||  ||||||    
T  10209971 tttgaaatgtttaat-cttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaacatctcaaagctagaacattaaacattcattgaagc 10210069  T
Q  558 ttttcttccaaaagaaagaga 578  Q
    |||||||| ||||||||||||    
T  10210070 ttttcttctaaaagaaagaga 10210090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 179 - 578
Target Start/End: Complemental strand, 10109445 - 10109027
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||| ||| ||||||||||||| |||||||  | ||||||||||| ||||||||||| ||||||||||||| |  |||||||||||||||||||||||||    
T  10109445 aaaaaatttaactaaaattgcagagccctccataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 10109346  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtgaactgcatagtttagtttt 378  Q
    |||||||||||||||||||||||||||||||||||||||||| || |  | | |   |||||| || ||||||||||||  | ||||||||||||||||     
T  10109345 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatctttacaaggagaggttctatctttttatatgcaagctgcatagtttagttt- 10109247  T
Q  379 atgaattggtcgatgtgggactctatcagacac---------------------ccaacggttctcacatatttcccctattcgctccttgacacattta 457  Q
    ||||||||| |||||||||||| ||||||||||                     ||| | |||||||||| |||||||||| | |||||| |||||||||    
T  10109246 atgaattgggcgatgtgggactttatcagacacgcacctgttctcacatgtcacccacccgttctcacatgtttcccctatccactccttcacacattta 10109147  T
Q  458 tttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccattccatgaagc 557  Q
    |||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||  |||| |    
T  10109146 tttgaaatgtttaatc-ttttctcttcaatttcatgtgtttaaaatcattttagttttctgcaacatctcaaaactagaacattaaatattcattgaaac 10109048  T
Q  558 ttttcttccaaaagaaagaga 578  Q
    |||||||| ||||||||||||    
T  10109047 ttttcttctaaaagaaagaga 10109027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 271 - 569
Target Start/End: Original strand, 12104608 - 12104903
Alignment:
Q  271 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtgaactgcatagt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||| ||||||||||||||| ||||||| |    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttacaagaagtagaggtcctatctttttatatgtgagctgcataat 12104707  T
Q  371 ttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacatttatttgaaatgttta 470  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||| | |||||||||| |||||||||||  ||| |  |||||  |||||||||| ||||    
T  12104708 ttag-tttatgaattggtcgatgtgggactttattagacacccacctgttctcacatgtttcccctatttactcatccacacacctatttgaaatattta 12104806  T
Q  471 atccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccattccatgaagcttttcttccaaa 569  Q
    || ||||||||||  |||||||| ||||||||||| ||||||||||| ||||||||||||  ||||||||||| ||| |  ||||||||| ||||||||    
T  12104807 at-cttttctcttcaatttcatgtgtttaaaatca-tttagttttctacaatatctcaaagttagaacattaaacatccactgaagctttccttccaaa 12104903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 171 - 411
Target Start/End: Original strand, 10212236 - 10212475
Alignment:
Q  171 agaataggaaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattc 270  Q
    |||||| |||||||||| |||||||||||| |||| || |||| ||||||||| ||||||||||| ||||||||||||| |  || ||||||| ||||||    
T  10212236 agaataagaaaatattgtactaaaattgcagagccttcggtgaggaggactcttccaaaaactagcgtatgccgctaattgtgacactcacacagtattc 10212335  T
Q  271 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtgaactgcatagt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | | | |  ||| |||||||| |||| |||||||||||| | |||||||    
T  10212336 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtacctattggaggtagaggtcatttcattttatatgtgatcagcatagt 10212435  T
Q  371 ttagttttatgaattggtcgatgtgggactctatcagacac 411  Q
    |||| |||||| |||||| ||||||||||  ||||||||||    
T  10212436 ttag-tttatgcattggtagatgtgggacattatcagacac 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 179 - 411
Target Start/End: Complemental strand, 10106032 - 10105801
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||| ||||||||||| ||||| |||||||  | ||||||||||| ||||||||||| |||||||||||||    |||||||||||||||||||||||||    
T  10106032 aaaaaattgaactaaatttgcagagccctcaataaagaggactcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttagtaa 10105933  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtgaactgcatagtttagtttt 378  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||  || |  ||||| ||||||| |||||||||  | ||||||||||||| |||    
T  10105932 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttaaaaaaagtagagatcctttcattttatatgaaagctgcatagtttag-ttt 10105834  T
Q  379 atgaattggtcgatgtgggactctatcagacac 411  Q
    ||||| ||| |||||||||||| | ||||||||    
T  10105833 atgaactgggcgatgtgggactttgtcagacac 10105801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 179 - 412
Target Start/End: Complemental strand, 10102948 - 10102715
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||||||||||||||| ||||| |||||||  ||||||||||||| ||||||||||||||||||||||||| |  |||||||||||||||||||||||||    
T  10102948 aaaatattgaactaaatttgcagagccctcaatgaagaggactcttccaaaaactagtgtatgccgctaattgtgacgctcacacggtattctttagtaa 10102849  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacacggctccat-gcttgtaagagatagaggtcctttctttttatatgtgaactgcatagtttagttt 377  Q
    |||||||||||||||||||||||||||||||||||| ||||| |   || ||| |    |||||| |||| ||||||| || | | ||||||||||| ||    
T  10102848 aaggcgaaagaatagttcgctatgtgatcatcacacagctccgtaaattttaacaagctgaggtcttttcgttttataagtaagcagcatagtttag-tt 10102750  T
Q  378 tatgaattggtcgatgtgggactctatcagacacc 412  Q
    ||||||||||||||||||||| | |||| ||||||    
T  10102749 tatgaattggtcgatgtgggagtttatccgacacc 10102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 13856335 - 13856221
Alignment:
Q  1 tatgtggtatctacgtattttagtaggatttatttgaatttcaacaaatacaaatgagtgtgttaggtagcataaattaaaatgaaagagttgaaattta 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  13856335 tatgtggtatctacgtattttagtaggatttatttgactttcaacaaatacaaatgagtgtgttaagta-aataaattaaaatgaaagagttgaaattta 13856237  T
Q  101 tcacgttcatgatggt 116  Q
    ||||||||||||||||    
T  13856236 tcacgttcatgatggt 13856221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 365 - 543
Target Start/End: Original strand, 10215984 - 10216160
Alignment:
Q  365 catagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacatttatttgaaa 464  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||   |||||||||| |||| ||||||  ||| |  ||||||||||||||||    
T  10215984 catagtttagtttc-tgaattggtcgatgtgggactttatcagacacccacatgttctcacatgtttcacctatttactcatccacacatttatttgaaa 10216082  T
Q  465 tgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaa 543  Q
     ||||||| ||||||||||  |||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  10216083 ggtttaat-cttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaa 10216160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 199 - 400
Target Start/End: Original strand, 12109329 - 12109531
Alignment:
Q  199 caaagccctctgtgaagaggactctc-ccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcg 297  Q
    ||||||||||  |||||| ||||||  ||||||||||| ||||||| | ||| |  |||||||||||||||||||||||||||||||||||||||||| |    
T  12109329 caaagccctcaatgaagatgactctttccaaaaactagcgtatgccacaaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtttg 12109428  T
Q  298 ctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtggg 397  Q
    ||||||||||||||  ||||||| ||||| |  ||| |||||||| |||| |||||||| |||   || ||||||   |||||| |||||||||||||||    
T  12109429 ctatgtgatcatcaggcggctccgtgcttattggaggtagaggtcatttcattttatatatgagaagcttagtttcagtttatgcattggtcgatgtggg 12109528  T
Q  398 act 400  Q
    |||    
T  12109529 act 12109531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 179 - 360
Target Start/End: Original strand, 9660199 - 9660380
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||||||||||||||||||||| ||| |||  |||| |||||||| ||||||||| |  ||||| |||||| |  ||| |||||| ||||||||||||||    
T  9660199 aaaatattgaactaaaattgcagagcactccatgaataggactcttccaaaaactggcatatgctgctaattgtgacgttcacacagtattctttagtaa 9660298  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtga 360  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||   |  ||||| |||||| |  ||||||||||||||||    
T  9660299 aaggcaaaataatagttcgctatgtgatcatcacaaggctccatctctaaaagaggtagaggccaattctttttatatgtga 9660380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 422 - 578
Target Start/End: Complemental strand, 10105750 - 10105596
Alignment:
Q  422 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 521  Q
    |||||| |||||||||||| ||| |  ||| ||||||||||||||||||||| |||||||||  |||||||  |||| ||||||| | |||||||| |||    
T  10105750 tcacatctttcccctattcactcatccacatatttatttgaaatgtttaatc-ttttctcttcaatttcatatgttttaaatcatat-agttttcttcaa 10105653  T
Q  522 tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 578  Q
    ||||||||| |||||||||||| |||||  |||||||||||||||||||||||||||    
T  10105652 tatctcaaagctagaacattaaacattcattgaagcttttcttccaaaagaaagaga 10105596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 619 - 714
Target Start/End: Complemental strand, 10108937 - 10108843
Alignment:
Q  619 atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatc 714  Q
    |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  10108937 atatccttaataaaatactta-cagtattaacaaggcatgaatttacagtaaggagctacagttgtcagtttgcagtaagagacttcggattaatc 10108843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 260 - 412
Target Start/End: Original strand, 9674763 - 9674918
Alignment:
Q  260 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcaca---cggctccatgcttgtaagagatagaggtcctttctttttatat 356  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||   ||||||| |||||  || || ||||||| ||||  ||||||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggcggctccgtgctttaaaaaggtagaggttctttaattttatat 9674862  T
Q  357 gtgaactgcatagtttagttttatgaattggtcgatgtgggactcta-tcagacacc 412  Q
    |||| | |||||||||||  ||||| |||||  ||||||||||| || |||||||||    
T  9674863 gtgagcagcatagtttag-cttatgcattggaggatgtgggactttagtcagacacc 9674918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 422 - 566
Target Start/End: Original strand, 9660489 - 9660631
Alignment:
Q  422 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 521  Q
    |||||| ||||||| |||| ||| |  |||||||||||||||| |||||||| ||||||||| ||||||||  |||||||||||||| |||||||| |||    
T  9660489 tcacatctttcccccattcactcatccacacatttatttgaaaggtttaatc-ttttctcttcgatttcatatgtttaaaatcattt-agttttcttcaa 9660586  T
Q  522 tatctcaaaactagaacattaaccattccatgaagcttttcttcc 566  Q
    |||||| || |||||||||||| |||||  |||||| || |||||    
T  9660587 tatctctaagctagaacattaaacattcattgaagcattccttcc 9660631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 422 - 578
Target Start/End: Original strand, 10212527 - 10212681
Alignment:
Q  422 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 521  Q
    |||||| |||||||||||| ||| |  |||||||||||  ||| | |||||||||| ||||   |||||||| |||||||||||| | |||||||| |||    
T  10212527 tcacatctttcccctattcactcatccacacatttattcaaaaggattaatccttt-ctctccaatttcatgtgtttaaaatcatct-agttttcttcaa 10212624  T
Q  522 tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 578  Q
     |||||||| |||||| ||||| |||||  |||||||||||||||||||||||||||    
T  10212625 catctcaaagctagaatattaatcattcattgaagcttttcttccaaaagaaagaga 10212681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 422 - 548
Target Start/End: Original strand, 12109599 - 12109723
Alignment:
Q  422 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 521  Q
    |||||| |||||||||||| ||| |  || ||||||||||||| |||||||| |||||||||  |||||||  |||||||||||||| |||||||| |||    
T  12109599 tcacatctttcccctattcactcatccacgcatttatttgaaaggtttaatc-ttttctcttcaatttcatatgtttaaaatcattt-agttttcttcaa 12109696  T
Q  522 tatctcaaaactagaacattaaccatt 548  Q
    |||||| || |||||||||||| ||||    
T  12109697 tatctctaagctagaacattaaacatt 12109723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 619 - 699
Target Start/End: Original strand, 10210184 - 10210263
Alignment:
Q  619 atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaaga 699  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||    
T  10210184 atatccttaataaaatactta-cagtattaacaagacatgaaattacagtaaggggctacaatgtttagtgtgcaataaga 10210263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 10215906 - 10215986
Alignment:
Q  242 ccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccat 322  Q
    |||||||| | ||| |||||| |||||||||||||||||||| |||||||||||  ||||||||||| ||||| |||||||    
T  10215906 ccgctaattgtaacactcacaaggtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacacagctccat 10215986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 37278735 - 37278787
Alignment:
Q  268 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctcc 37278787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 449 - 549
Target Start/End: Original strand, 9674994 - 9675091
Alignment:
Q  449 acacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccatt 548  Q
    ||||||||||||||||||||||||| |||||||||  || ||||  ||||||| |||||| ||||||||   |||||||||| |||||||||||||||||    
T  9674994 acacatttatttgaaatgtttaatc-ttttctcttcaatatcatatgtttaaa-tcattt-agttttctttgatatctcaaagctagaacattaaccatt 9675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 3467667 - 3467721
Alignment:
Q  264 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 318  Q
    |||||||||||||||||||||||||||||||| ||| || | |||||||||||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggct 3467721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13865504 - 13865455
Alignment:
Q  1 tatgtggtatctacgtattttagtaggatttatttgaatttcaacaaata 50  Q
    ||||||| |||||| ||||||||||||||| |||||||||| ||||||||    
T  13865504 tatgtggaatctacatattttagtaggattaatttgaattttaacaaata 13865455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 10215869 - 10215904
Alignment:
Q  172 gaataggaaaatattgaactaaaattgcaaagccct 207  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10215869 gaataggaaaatattgaactaaaattgcagagccct 10215904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 219 - 397
Target Start/End: Complemental strand, 10542496 - 10542318
Alignment:
Q  219 actctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 318  Q
    ||||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10542496 actcttccaaaaactagcgtatgccgctaattgtaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 10542397  T
Q  319 ccatgc-ttgtaagagatagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtggg 397  Q
    || ||| || |||  | |||| |||||||| |||||||||||| | || ||||| || || ||| ||| |||||||||||    
T  10542396 ccgtgctttataactgttagatgtcctttcattttatatgtgagcagcttagttaag-ttgatgtattagtcgatgtggg 10542318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 188 - 320
Target Start/End: Complemental strand, 45152128 - 45151996
Alignment:
Q  188 aactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaa 287  Q
    |||||| |||||| ||||||| || ||||||||||| ||||||||||| ||||||||||||  |  || || ||||||||||||||||||||||||||||    
T  45152128 aactaatattgcagagccctccgtaaagaggactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaa 45152029  T
Q  288 gaatagttcgctatgtgatcatcacacggctcc 320  Q
    |||||||||||||||| || |||||||||||||    
T  45152028 gaatagttcgctatgtcattatcacacggctcc 45151996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 42202383 - 42202496
Alignment:
Q  213 aagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcac 312  Q
    |||| |||||| ||||||||||| ||||||||||||  |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  42202383 aagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacac 42202482  T
Q  313 acggctccatgctt 326  Q
    |||||||| |||||    
T  42202483 acggctccgtgctt 42202496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 42211251 - 42211364
Alignment:
Q  213 aagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcac 312  Q
    |||| |||||| ||||||||||| ||||||||||||  |  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  42211251 aagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacac 42211350  T
Q  313 acggctccatgctt 326  Q
    |||||||| |||||    
T  42211351 acggctccgtgctt 42211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 188 - 320
Target Start/End: Original strand, 45316380 - 45316512
Alignment:
Q  188 aactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaa 287  Q
    |||||| |||||| |||||||  | |||||| |||| ||||||||||  |||||||| ||| ||  ||| | ||||||||||||||||||||||||||||    
T  45316380 aactaatattgcagagccctcaattaagagggctcttccaaaaactaacgtatgccgttaaaagtgacgttgacacggtattctttagtaaaaggcgaaa 45316479  T
Q  288 gaatagttcgctatgtgatcatcacacggctcc 320  Q
    |||||||||||||||| ||||||||||||||||    
T  45316480 gaatagttcgctatgtcatcatcacacggctcc 45316512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 2176315 - 2176423
Alignment:
Q  218 gactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggc 317  Q
    |||||| ||||||||||| ||||||||||||  |  || || |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |    
T  2176315 gactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacgtc 2176414  T
Q  318 tccatgctt 326  Q
    ||| |||||    
T  2176415 tccgtgctt 2176423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 216 - 326
Target Start/End: Complemental strand, 42409704 - 42409594
Alignment:
Q  216 aggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacg 315  Q
    |||||||| ||||||||||  ||||| || |||  |  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  42409704 aggactcttccaaaaactaacgtatgtcgttaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacaca 42409605  T
Q  316 gctccatgctt 326  Q
    ||||| |||||    
T  42409604 gctccgtgctt 42409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 43014361 - 43014427
Alignment:
Q  254 acgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43014361 acgcacacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 43014427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 42217251 - 42217339
Alignment:
Q  238 tatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgctt 326  Q
    |||||||||||  || || || |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  42217251 tatgccgctaaatgcgaccctgacacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatgctt 42217339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 42417700 - 42417644
Alignment:
Q  264 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctcc 42417644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 51795127 - 51795024
Alignment:
Q  213 aagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcac 312  Q
    |||| |||||| |||||||||||  |||||||| ||  |  ||| | | ||| |||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  51795127 aagatgactcttccaaaaactagcatatgccgcaaaatgtgacgttgatacgctattctttagtaaaaggcgaaacaatagtttgctatgtcatcatcac 51795028  T
Q  313 acgg 316  Q
    ||||    
T  51795027 acgg 51795024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 578
Target Start/End: Complemental strand, 10542252 - 10542173
Alignment:
Q  499 aaaatcattttagttttctgcaa-tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 578  Q
    ||||||||||||| ||||| ||| |||||||||  ||||| ||||| |||||| ||||||||| ||||| |||||||||||    
T  10542252 aaaatcattttagatttcttcaaatatctcaaagttagaagattaaacattccttgaagctttgcttcc-aaagaaagaga 10542173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 31555089 - 31555230
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||| ||| |||||| |||||| |||||||  | |||| |||||| ||||||||||| ||||||||||||| |  |||||||||||||||||||||||||    
T  31555089 aaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 31555188  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31555189 aaggcgaaagaatagttcgctatgtgatcatcacacggctcc 31555230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 31878380 - 31878239
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||| ||| |||||| |||||| |||||||  | |||| |||||| ||||||||||| ||||||||||||| |  |||||||||||||||||||||||||    
T  31878380 aaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 31878281  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31878280 aaggcgaaagaatagttcgctatgtgatcatcacacggctcc 31878239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 214 - 357
Target Start/End: Original strand, 31558209 - 31558352
Alignment:
Q  214 agaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcaca 313  Q
    |||||||||| | ||||||||  ||||||||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31558209 agaggactcttctaaaaactaacgtatgccgctaattgtgacgttcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcaca 31558308  T
Q  314 cggctccatgcttgtaagagatagaggtcctttctttttatatg 357  Q
    ||||||||||||| ||| || |||| || |||||  ||||||||    
T  31558309 cggctccatgcttataaaaggtagaagtgctttcagtttatatg 31558352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 13568429 - 13568482
Alignment:
Q  269 tctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccat 322  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacggttccat 13568482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 4042245 - 4042298
Alignment:
Q  265 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 318  Q
    |||||||||||| |||||||||||||||||| ||| || | |||||||||||||    
T  4042245 gtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcacacggct 4042298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 3647170 - 3647029
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||| |||| ||||| |||||| |||||||  | |||||||| ||  ||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  3647170 aaaacattgcactaacattgcagagccctcaataaagaggaccctttcaaaaactagtgtatgccgctaatagtgacgctgacacggtattctttagtaa 3647071  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  3647070 aaggcgaaagaatagtttgctatgtcatcatcacacggctcc 3647029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 3649619 - 3649484
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||| |||||||||| |||||| |||||||  | |||||||| || |||||||||||  ||||||| |||| |  | ||| |||||||||||||||||||    
T  3649619 aaaaaattgaactaatattgcagagccctcaattaagaggacccttccaaaaactagcatatgccgataattgtgatgctaacacggtattctttagtaa 3649520  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacac 314  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3649519 aaggcgaaagaatagttcgctatgtcatcatcacac 3649484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 3657736 - 3657601
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||| |||||||||| |||||| || ||||  | |||| ||  || ||||||||||||||||||||||| | |  ||||| |||||||||||||||||||    
T  3657736 aaaaaattgaactaatattgcagagtcctcgataaagatgatccttccaaaaactagtgtatgccgctatttgtgacgctgacacggtattctttagtaa 3657637  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacac 314  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3657636 aaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 3641264 - 3641211
Alignment:
Q  265 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3641264 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 360
Target Start/End: Complemental strand, 3645119 - 3645021
Alignment:
Q  260 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtg 359  Q
    ||||||||||||||| |||||||| |||||||| ||| |  ||| ||||| ||| |||||| || || | |||| ||||||||||||  |||||||||||    
T  3645119 acacggtattctttaataaaaggcaaaagaataattcac--tgtcatcattacaaggctccctggttttgagaggtagaggtcctttgcttttatatgtg 3645022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 19523283 - 19523330
Alignment:
Q  259 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgat 306  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  19523283 cacacggaattctttagtaaaaggcgaaagaattattcgctctgtgat 19523330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 46446324 - 46446211
Alignment:
Q  213 aagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcac 312  Q
    |||| |||||| ||||||||||| |||||||   ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46446324 aagaagactcttccaaaaactagcgtatgccaaaaatagtaacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcac 46446225  T
Q  313 acggctccatgctt 326  Q
    | ||||||||||||    
T  46446224 aaggctccatgctt 46446211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 21884021 - 21884157
Alignment:
Q  184 attgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggc 283  Q
    |||||||| | |||||| ||||||| ||||| ||||||||  |||||| ||  ||||||||||   ||  |||| |||||||||||||||||||||||||    
T  21884021 attgaacttatattgcagagccctcggtgaaaaggactctttcaaaaattaacgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggc 21884120  T
Q  284 gaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    ||||||||||||||||||||| |||||||||||||||    
T  21884121 gaaagaatagttcgctatgtgctcatcacacggctcc 21884157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 35717255 - 35717307
Alignment:
Q  271 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 323  Q
    ||||||||||| ||||| ||||||| |||||||| ||||||||||||| ||||    
T  35717255 tttagtaaaagacgaaataatagtttgctatgtgctcatcacacggcttcatg 35717307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 9e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 17889566 - 17889425
Alignment:
Q  179 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaa 278  Q
    |||||||| |||||| |||||| | |||||  | | |||||||||  |||||| ||| ||||||||||  |||  |||  ||||||||||||||||||||    
T  17889566 aaaatattaaactaatattgcagaaccctcattaaggaggactctttcaaaaattagcgtatgccgcttttagtgacgtgcacacggtattctttagtaa 17889467  T
Q  279 aaggcgaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  17889466 aaggcgaaagaatagttcgctatgtgctcatcacacggctcc 17889425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 25698918 - 25698805
Alignment:
Q  213 aagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcac 312  Q
    ||||||| ||| ||||||||||| |||||||||||||    ||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  25698918 aagaggattcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcac 25698819  T
Q  313 acggctccatgctt 326  Q
    || ||||| |||||    
T  25698818 acagctccgtgctt 25698805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 36790904 - 36790848
Alignment:
Q  254 acgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  36790904 acgctcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 36790848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 49588194 - 49588251
Alignment:
Q  259 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||    
T  49588194 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacgg 49588251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 20918725 - 20918686
Alignment:
Q  269 tctttagtaaaaggcgaaagaatagttcgctatgtgatca 308  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatca 20918686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 46362544 - 46362595
Alignment:
Q  264 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacg 315  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||| |||||    
T  46362544 ggtattctttagtaaaaagcgaaataatagttcgctatgtcatcattacacg 46362595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 33891656 - 33891599
Alignment:
Q  259 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacgg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  33891656 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacgg 33891599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 27868671 - 27868723
Alignment:
Q  268 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 320  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||| ||||||||||    
T  27868671 ttcttaagtaaaagacgaaacaatagtttgctatgtgatcattacacggctcc 27868723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 26568407 - 26568338
Alignment:
Q  254 acgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 323  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  26568407 acgcgcacacggtattctttagtaaaaggcaaaagaatagttcgctatgtgctcatcacacagctgcatg 26568338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 5900589 - 5900532
Alignment:
Q  259 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||    
T  5900589 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacgg 5900532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 43633443 - 43633495
Alignment:
Q  259 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatca 311  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||||||    
T  43633443 cacacggtattctttagtaaaaggcgaaagaatagttcactttgtgctcatca 43633495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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