View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8306_high_1 (Length: 332)
Name: NF8306_high_1
Description: NF8306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8306_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 5065525 - 5065651
Alignment:
| Q |
3 |
actttatgaaaaagtttatgtccgtacctggctctccgattctggaaccatacttcaacttgtcgtggccttagattcaactgtctcgctaaagcttgtt |
102 |
Q |
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| T |
5065525 |
actttatgaaaaagtttatgtccgtacctggctctccgattctggaaccatacttcaacttgtcgtggccttagattcaactgtctcgctaaagcttgtt |
5065624 |
T |
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| Q |
103 |
tttgtttctgaaaatcaaatccaacag |
129 |
Q |
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| T |
5065625 |
tttgtttctgaaaatcaaatccaacag |
5065651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 5065730 - 5065837
Alignment:
| Q |
208 |
agaagagaaaaatatttacaggattgagagtgctgtgtagtttgaagctttcttcaagcaatagtgattgttctttggtaagcctcaatttctttctagc |
307 |
Q |
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| T |
5065730 |
agaagagaaaaatatttacaggattgagagtgctgtgtagtttgaagctttcttcaagcaatagtgattgttctttggtaagcctcaatttctttctagc |
5065829 |
T |
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| Q |
308 |
atttgtag |
315 |
Q |
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| T |
5065830 |
atttgtag |
5065837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 40299727 - 40299683
Alignment:
| Q |
223 |
ttacaggattgagagtgctgtgtagtttgaagctttcttcaagca |
267 |
Q |
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| T |
40299727 |
ttacaggattgagagtgctgtgttctttgaagctttcttcaagca |
40299683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 40299902 - 40299810
Alignment:
| Q |
26 |
gtacctggctctccgattctggaaccatacttcaacttgtcgtggccttagattcaactgtctcgctaaagcttgtttttgtttctgaaaatc |
118 |
Q |
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| T |
40299902 |
gtacctggctctacggttctggaaccagacctcgacttgtcgaggtgttagatttaactctctggctaaagcttgcttctgtttctgtaaatc |
40299810 |
T |
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