View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8307_high_1 (Length: 655)

Name: NF8307_high_1
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8307_high_1
NF8307_high_1
[»] chr2 (8 HSPs)
chr2 (1-636)||(40058568-40059209)
chr2 (1-555)||(40084605-40085147)
chr2 (1-392)||(40076832-40077237)
chr2 (569-617)||(15861133-15861181)
chr2 (569-615)||(39606952-39606998)
chr2 (438-491)||(40076726-40076780)
chr2 (575-620)||(45281492-45281537)
chr2 (575-620)||(45287953-45287998)
[»] chr3 (4 HSPs)
chr3 (8-137)||(53322412-53322539)
chr3 (29-104)||(44352747-44352822)
chr3 (574-628)||(43493866-43493920)
chr3 (572-625)||(19227169-19227222)
[»] chr4 (5 HSPs)
chr4 (28-102)||(22016224-22016298)
chr4 (172-258)||(22016597-22016683)
chr4 (11-130)||(20005703-20005812)
chr4 (569-627)||(46462391-46462449)
chr4 (569-617)||(46462461-46462509)
[»] chr8 (4 HSPs)
chr8 (16-116)||(5450715-5450814)
chr8 (569-627)||(39910475-39910533)
chr8 (582-627)||(43295959-43296004)
chr8 (589-629)||(30114811-30114851)
[»] chr1 (6 HSPs)
chr1 (569-627)||(34500162-34500220)
chr1 (11-130)||(14124553-14124662)
chr1 (571-626)||(37096170-37096225)
chr1 (578-628)||(47507584-47507634)
chr1 (584-628)||(19771171-19771215)
chr1 (569-613)||(28456861-28456905)
[»] chr7 (6 HSPs)
chr7 (45-106)||(35052914-35052975)
chr7 (551-628)||(27115305-27115382)
chr7 (66-139)||(35052966-35053039)
chr7 (583-628)||(24163343-24163388)
chr7 (572-629)||(31741949-31742006)
chr7 (571-627)||(23852561-23852617)
[»] chr5 (9 HSPs)
chr5 (75-130)||(12735846-12735901)
chr5 (75-130)||(12798673-12798728)
chr5 (572-627)||(39933348-39933403)
chr5 (569-629)||(22626810-22626870)
chr5 (589-628)||(27094316-27094355)
chr5 (569-618)||(8955351-8955400)
chr5 (551-628)||(21488280-21488357)
chr5 (569-617)||(13689087-13689135)
chr5 (570-626)||(27385480-27385536)
[»] scaffold0014 (1 HSPs)
scaffold0014 (578-628)||(133207-133257)
[»] scaffold0018 (1 HSPs)
scaffold0018 (572-629)||(153979-154036)
[»] chr6 (1 HSPs)
chr6 (587-627)||(21162433-21162473)


Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Complemental strand, 40059209 - 40058568
Alignment:
Q  1 aacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059209 aacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatc 40059110  T
Q  101 tataaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctggggagtactacgagggtagtgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40059109 tataaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaa 40059010  T
Q  201 tagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||    
T  40059009 tagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgcaaaacatttttggtaggaaccaaagtag 40058910  T
Q  301 aaccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaactcactagggaaggaaagattggactt 400  Q
    ||||||||||||||||  ||||||||||||||||||| | ||||||||||||| ||||||| ||| ||||||||||||||||||| ||| || | || |     
T  40058909 aaccaacacaatttcaaaggctctcatggtaattattttggaagaatgaatgaaccaaaaatagagaaagaaactcactagggaaagaaggaat-gaatg 40058811  T
Q  401 tggtttggtttggtttatttgtta--catgtg-----nnnnnnnggtcacgtggatgtgaaatgtaagtgatgatgcttagaagaagaacaagggtaata 493  Q
       |||||||||||||||||||||  ||||||            |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  40058810 aactttggtttggtttatttgttacgcatgtgtttgtattttttggtcacgtgggtgtgaaatgtaagtgatgatgctttgaagaagaacaagagtaata 40058711  T
Q  494 taacatgtgtagctaactagctatatataatgtacattctacgaggaggaacaaggtaatactccgtcaggtccaaattataaacaatttttcacttttt 593  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40058710 taacatgtgtagctaactagctatatataatgtacattctatgaggagaaacaaggtaatactccgtcaagtccaaattataaacaatttttcacttttt 40058611  T
Q  594 aaattcaatgaataaataatgtatatggtctatatagcttagc 636  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40058610 aaattcaatgaataaataatgtatatggtctatatagcttagc 40058568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 40085147 - 40084605
Alignment:
Q  1 aacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085147 aacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatc 40085048  T
Q  101 tataaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctggggagtactacgagggtagtgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40085047 tataaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtactacgagggtagtgaa 40084948  T
Q  201 tagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084947 tagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcag 40084848  T
Q  301 aaccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaactcactagggaaggaaagattggactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084847 aaccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaactcactagggaaggaaagattggactt 40084748  T
Q  401 tggtttggtttggtttatttgttacatgtgnnnnnnnggtcacgtggatgtgaaatgtaagtgatgatgcttagaagaagaacaagggtaatataacatg 500  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |    
T  40084747 tggtttggtttggtttatttgttacatgtgtttttttggtcacgtggatgtgaaatgtaagtgatgatgcttagaagaagaacatgagtaatataacacg 40084648  T
Q  501 tgtagctaactagctatatataatgtacattctacgaggaggaacaaggtaatac 555  Q
    ||            |||||||||||||||||||| |||||| |||||||||||||    
T  40084647 tg------------tatatataatgtacattctatgaggagaaacaaggtaatac 40084605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 40077237 - 40076832
Alignment:
Q  1 aacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077237 aacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatc 40077138  T
Q  101 tataaacaacaacaaattcagcactgtttaaattcaa--------------cacacaaacagaatcaaagagagacataaaataaaacctggggagtact 186  Q
    |||||||||||||||||||||||||||||||| ||||              | |||||||||||||||||||||||||||||||||||||| ||||||||    
T  40077137 tataaacaacaacaaattcagcactgtttaaaatcaaatacaatgcaaaaactcacaaacagaatcaaagagagacataaaataaaacctgtggagtact 40077038  T
Q  187 acgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  40077037 acgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgcaaaacatttttggt 40076938  T
Q  287 aagaaccaaagcagaaccaacacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaactcactagggaag 386  Q
    | ||||||||| ||||||||||||||||||  ||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  40076937 aggaaccaaagtagaaccaacacaatttcaaaggctctcatggtaattattttggaagaatgaatgaaccaaagagagaaaaagaaactcactagtgaag 40076838  T
Q  387 gaaaga 392  Q
    ||||||    
T  40076837 gaaaga 40076832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 617
Target Start/End: Original strand, 15861133 - 15861181
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgtat 617  Q
    |||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  15861133 aattataaacaatttttcactttttaaattcattaaataaatgatgtat 15861181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 615
Target Start/End: Complemental strand, 39606998 - 39606952
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgt 615  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||||    
T  39606998 aattataaacaattttttactttttaaatttattgaataaataatgt 39606952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 491
Target Start/End: Complemental strand, 40076780 - 40076726
Alignment:
Q  438 ggtcacgtggatgtgaaatgtaagtgatgatgcttag-aagaagaacaagggtaa 491  Q
    |||||||||| ||||||||||||||||||||| || | |||||||||||| ||||    
T  40076780 ggtcacgtgggtgtgaaatgtaagtgatgatggtttgtaagaagaacaagagtaa 40076726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 620
Target Start/End: Original strand, 45281492 - 45281537
Alignment:
Q  575 aaacaatttttcactttttaaattcaatgaataaataatgtatatg 620  Q
    ||||||||||||| |||||||||| | |||||||||||| ||||||    
T  45281492 aaacaatttttcattttttaaatttattgaataaataatatatatg 45281537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 620
Target Start/End: Original strand, 45287953 - 45287998
Alignment:
Q  575 aaacaatttttcactttttaaattcaatgaataaataatgtatatg 620  Q
    ||||||||||||| |||||||||| | |||||||||||| ||||||    
T  45287953 aaacaatttttcattttttaaatttattgaataaataatatatatg 45287998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 53322539 - 53322412
Alignment:
Q  8 cctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaac 107  Q
    |||||||| |||| |||||||||||||||| ||||| |||  ||||||| || |||||||||| || |||| ||||| |||| ||||||||||||||| |    
T  53322539 cctttaactggtttatgtaagttccagaaa-catag-tttggatgacataaaatcctccatctatatatttttgaatgaggtttggccacatctataacc 53322442  T
Q  108 aacaacaaattcagcactgtttaaattcaa 137  Q
    ||||||||||||| ||| ||||||| ||||    
T  53322441 aacaacaaattcaacaccgtttaaaatcaa 53322412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 44352747 - 44352822
Alignment:
Q  29 ttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctata 104  Q
    ||||||||||||||||||||||||||||| | ||| || ||||| | | | ||||||||  | |||||||||||||    
T  44352747 ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatctata 44352822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 628
Target Start/End: Complemental strand, 43493920 - 43493866
Alignment:
Q  574 taaacaatttttcactttttaaattcaatgaataaataatgtatatggtctatat 628  Q
    ||||||| |||||||||||||||||||   ||||||| |||||||||||| ||||    
T  43493920 taaacaacttttcactttttaaattcatctaataaatgatgtatatggtccatat 43493866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 625
Target Start/End: Original strand, 19227169 - 19227222
Alignment:
Q  572 tataaacaatttttcactttttaaattcaatgaataaataatgtatatggtcta 625  Q
    ||||| ||| ||||||||||||| ||||| | ||||||| ||||||||||||||    
T  19227169 tataagcaacttttcactttttagattcacttaataaatgatgtatatggtcta 19227222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 22016224 - 22016298
Alignment:
Q  28 gttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatcta 102  Q
    ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||||||    
T  22016224 gttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatcta 22016298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 22016597 - 22016683
Alignment:
Q  172 aacctggggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcata 258  Q
    |||||| ||||| |||||||| || ||||| |||||||| || |  || || |||||||||||||||||||||||||||||||||||    
T  22016597 aacctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatgctctatgatcata 22016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 20005812 - 20005703
Alignment:
Q  11 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 110  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  20005812 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 20005723  T
Q  111 aacaaattcagcactgttta 130  Q
    |||||||||| ||| |||||    
T  20005722 aacaaattcaacaccgttta 20005703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 627
Target Start/End: Original strand, 46462391 - 46462449
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctata 627  Q
    |||||||| ||| ||||||||||||| ||||| | ||||||| ||||||||||| ||||    
T  46462391 aattataagcaacttttcactttttagattcattaaataaatgatgtatatggtttata 46462449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 617
Target Start/End: Complemental strand, 46462509 - 46462461
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgtat 617  Q
    |||||||| |||||||||||||||||  |||| ||||||||| ||||||    
T  46462509 aattataagcaatttttcactttttaggttcattgaataaatgatgtat 46462461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 5450814 - 5450715
Alignment:
Q  16 aggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaa 115  Q
    ||||||||||   ||||||||||||||||||| ||| ||||| | |||||| |||||||  ||||| ||||| |||||||||||||| ||||||||||||    
T  5450814 aggttcatgtccattccagaaaacataggtttgaatcacatccaatcctccttctttagccttctggataagatctggccacatcta-aaacaacaacaa 5450716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 569 - 627
Target Start/End: Original strand, 39910475 - 39910533
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctata 627  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  39910475 aattataagcaatttttcactttttagattcattgaataaataatgtatgtggtctata 39910533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 627
Target Start/End: Complemental strand, 43296004 - 43295959
Alignment:
Q  582 ttttcactttttaaattcaatgaataaataatgtatatggtctata 627  Q
    ||||||||||||||||||| | ||||||| |||||| |||||||||    
T  43296004 ttttcactttttaaattcattcaataaatgatgtatgtggtctata 43295959  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 629
Target Start/End: Complemental strand, 30114851 - 30114811
Alignment:
Q  589 tttttaaattcaatgaataaataatgtatatggtctatata 629  Q
    |||||||||||| ||||||| |||||||| |||||||||||    
T  30114851 tttttaaattcattgaataactaatgtatttggtctatata 30114811  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 34500220 - 34500162
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctata 627  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||| || |||||||||    
T  34500220 aattataagcaatttttcactttttagattcattgaataaataatgcatgtggtctata 34500162  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 14124553 - 14124662
Alignment:
Q  11 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 110  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  14124553 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 14124642  T
Q  111 aacaaattcagcactgttta 130  Q
    |||||||||| ||| |||||    
T  14124643 aacaaattcaacaccgttta 14124662  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 37096225 - 37096170
Alignment:
Q  571 ttataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctat 626  Q
    ||||||||||||||| |||||||| ||||| ||||||||| |||||| || |||||    
T  37096225 ttataaacaatttttgactttttagattcattgaataaatgatgtatgtgatctat 37096170  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 628
Target Start/End: Original strand, 47507584 - 47507634
Alignment:
Q  578 caatttttcactttttaaattcaatgaataaataatgtatatggtctatat 628  Q
    ||||||||||||||||| ||||| | ||||||| |||||||||||| ||||    
T  47507584 caatttttcactttttagattcatttaataaattatgtatatggtccatat 47507634  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 628
Target Start/End: Original strand, 19771171 - 19771215
Alignment:
Q  584 ttcactttttaaattcaatgaataaataatgtatatggtctatat 628  Q
    ||||||||||||||||| | |||||||  ||||||||||||||||    
T  19771171 ttcactttttaaattcattcaataaatgttgtatatggtctatat 19771215  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 613
Target Start/End: Complemental strand, 28456905 - 28456861
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataat 613  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||    
T  28456905 aattataaacaacatttcactttttagattcattgaataaataat 28456861  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 35052914 - 35052975
Alignment:
Q  45 tttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaa 106  Q
    |||| ||||||| ||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  35052914 tttcgatgacataaagtcctccatctataaatttttgaataaggtttggccacatctataaa 35052975  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 628
Target Start/End: Complemental strand, 27115382 - 27115305
Alignment:
Q  551 aatactccgtcaggtccaaattataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctatat 628  Q
    |||||||| || ||||  |||||||| |||  |||||||||||| ||||| ||||||||| |||||| ||||||||||    
T  27115382 aatactccctccggtctcaattataagcaacctttcactttttagattcattgaataaattatgtatgtggtctatat 27115305  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 35052966 - 35053039
Alignment:
Q  66 catctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaattcaaca 139  Q
    ||||| || |||| |||||||||| ||||||||||||||| |||| ||||||||| |||  |||||| ||||||    
T  35052966 catctataaatttttgaataaggtttggccacatctataaccaacgacaaattcaacaccttttaaaatcaaca 35053039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 628
Target Start/End: Complemental strand, 24163388 - 24163343
Alignment:
Q  583 tttcactttttaaattcaatgaataaataatgtatatggtctatat 628  Q
    ||||||||||| |||||| || |||||| |||||||||||||||||    
T  24163388 tttcacttttttaattcattgcataaatgatgtatatggtctatat 24163343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 629
Target Start/End: Complemental strand, 31742006 - 31741949
Alignment:
Q  572 tataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctatata 629  Q
    ||||||||| |||||||||||||||||||   ||||||| |||||| |||||| ||||    
T  31742006 tataaacaacttttcactttttaaattcatctaataaatgatgtatgtggtctttata 31741949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 627
Target Start/End: Original strand, 23852561 - 23852617
Alignment:
Q  571 ttataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctata 627  Q
    |||||||||| |||| |||||||| ||||||| || |||  ||||||||||||||||    
T  23852561 ttataaacaactttttactttttagattcaataaagaaacgatgtatatggtctata 23852617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 12735846 - 12735901
Alignment:
Q  75 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 130  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12735846 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 12798673 - 12798728
Alignment:
Q  75 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 130  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12798673 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12798728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 627
Target Start/End: Original strand, 39933348 - 39933403
Alignment:
Q  572 tataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctata 627  Q
    |||||||||  ||||| ||||||| |||| ||||||||||||||||||||||||||    
T  39933348 tataaacaacgtttcaatttttaatttcattgaataaataatgtatatggtctata 39933403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 629
Target Start/End: Complemental strand, 22626870 - 22626810
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctatata 629  Q
    |||||||||||| |||||| ||||||||||||   ||||||| |||||| |||||||||||    
T  22626870 aattataaacaacttttcaatttttaaattcatgaaataaatgatgtatgtggtctatata 22626810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 628
Target Start/End: Complemental strand, 27094355 - 27094316
Alignment:
Q  589 tttttaaattcaatgaataaataatgtatatggtctatat 628  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  27094355 tttttaaattcattgaataaattatgtatatggtctatat 27094316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 8955351 - 8955400
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgtata 618  Q
    |||||||||||| |||| |||||||||||| | |||||||||||| ||||    
T  8955351 aattataaacaactttttactttttaaatttattgaataaataatatata 8955400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 628
Target Start/End: Original strand, 21488280 - 21488357
Alignment:
Q  551 aatactccgtcaggtccaaattataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctatat 628  Q
    |||||||| ||| |||| | ||||||  ||| ||| ||||||| |||||| || ||||||||||||| ||||||||||    
T  21488280 aatactccctcatgtcctatttataagaaatatttgacttttttaattcattgcataaataatgtatttggtctatat 21488357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 617
Target Start/End: Complemental strand, 13689135 - 13689087
Alignment:
Q  569 aattataaacaatttttcactttttaaattcaatgaataaataatgtat 617  Q
    ||||||||  ||||||| ||||||||| |||| ||||||||||||||||    
T  13689135 aattataagaaattttttactttttaagttcattgaataaataatgtat 13689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 27385480 - 27385536
Alignment:
Q  570 attataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctat 626  Q
    ||||||| ||| ||||||||||||| | ||| ||||||||| |||||| ||||||||    
T  27385480 attataagcaacttttcactttttagactcattgaataaatgatgtatgtggtctat 27385536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 628
Target Start/End: Complemental strand, 133257 - 133207
Alignment:
Q  578 caatttttcactttttaaattcaatgaataaataatgtatatggtctatat 628  Q
    |||||||||||||||||  |||| |||||||| ||||||| ||||||||||    
T  133257 caatttttcactttttaggttcattgaataaacaatgtatgtggtctatat 133207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 629
Target Start/End: Complemental strand, 154036 - 153979
Alignment:
Q  572 tataaacaatttttcactttttaaattcaatgaataaataatgtatatggtctatata 629  Q
    |||||| || ||||||||||||| ||||| | ||||||| |||||| |||||||||||    
T  154036 tataaaaaacttttcactttttagattcatttaataaatgatgtatgtggtctatata 153979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 627
Target Start/End: Original strand, 21162433 - 21162473
Alignment:
Q  587 actttttaaattcaatgaataaataatgtatatggtctata 627  Q
    ||||||| |||||| || |||||||||||||||||||||||    
T  21162433 acttttttaattcattgcataaataatgtatatggtctata 21162473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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