View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8307_high_11 (Length: 252)
Name: NF8307_high_11
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8307_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 16062408 - 16062646
Alignment:
| Q |
1 |
ccattgagaagccttaatttctttgtgatcattaccgaaaaaacatgactgtaattcgcctaagatcttctttgcgaagaaagaatcatcattattgacg |
100 |
Q |
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| T |
16062408 |
ccattgagaaaccttaatttctttgtgatcattaccgaaaaaacatgactgtaattcgcctaagatcttctttgcgaagaaagaatcatcattattgacg |
16062507 |
T |
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| Q |
101 |
accgacattttatagatctccaatggactttttggatttactaatacctaatcattgcaaatttggctcttcgaaccactgcaattttcttcaactttcc |
200 |
Q |
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| T |
16062508 |
accgacattgtatagatctccaatggactttttggatttactaatacctaatcattgcaaatttggctcttcgaaccattgcaattttcttcagctttcc |
16062607 |
T |
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| Q |
201 |
tattgaatgtatgaaattttaatttgagctcttgttcat |
239 |
Q |
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| T |
16062608 |
tattgaatgtatgaaattttaatttgaactcttgttcat |
16062646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 16073807 - 16074041
Alignment:
| Q |
5 |
tgagaagccttaatttctttgtgatcattaccgaaaaaacatgactgtaattcgcctaagatcttctttgcgaagaaagaatcatcattattgacgaccg |
104 |
Q |
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| T |
16073807 |
tgagaagccttaatttctttgtgatcattaccgaaaaaacatgattgtaattcgcctaagatcttttttgcgaagaaagaatcatcattattgacgaccg |
16073906 |
T |
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| Q |
105 |
acattttatagatctccaatggactttttggatttactaatacctaatcattgcaaatttggctcttcgaaccactgcaattttcttcaactttcctatt |
204 |
Q |
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| T |
16073907 |
acattgtatagacctccaatggactctttggatttactaatacctaatcattacaaatttggctcttcgaaccattgtaattttcttcagctttcctatt |
16074006 |
T |
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| Q |
205 |
gaatgtatgaaattttaatttgagctcttgttcat |
239 |
Q |
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| T |
16074007 |
gaatgtatgaaattttaatttgagctcttgttcat |
16074041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 16068685 - 16068856
Alignment:
| Q |
69 |
tctttgcgaagaaagaatcatcattattgacgaccgacattttatagatctccaa---tggactttttggatttactaatacctaatcattgcaaatttg |
165 |
Q |
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| T |
16068685 |
tctttgcgaataaaga-tcatcattaatgacgaccaatactgtatagatctataaatatgaactttttggatttactaatacctaatcattgcaaatttg |
16068783 |
T |
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| Q |
166 |
gctcttcgaaccactgcaattttcttcaactttcctattgaatgtatgaaattttaatttgagctcttgttcat |
239 |
Q |
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| T |
16068784 |
cctc-tcgaaccactgcaactttcctcagcttttgtattgaatgtacgaatttttaatttgagctattgttcat |
16068856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 16094930 - 16095093
Alignment:
| Q |
68 |
ttctttgcgaagaaagaatcatcattattgacgaccgacattttatagatctccaatggactttttggatttactaatacctaatcattgcaaatttggc |
167 |
Q |
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| T |
16094930 |
ttctctgcaaagaaagaataatcattattgacgatcgacactctatagatctcctatataaattttagatttaccaacacctaatcattgcaaatatagc |
16095029 |
T |
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| Q |
168 |
tcttcgaaccactgcaattttcttcaactttcctattgaatgtatgaaattttaatttgagctct |
232 |
Q |
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| T |
16095030 |
tctttcaacttttgcaactttattcaactttcgttttgaatgta-caaaatttaatttgaactct |
16095093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 33500584 - 33500621
Alignment:
| Q |
55 |
ttcgcctaagatcttctttgcgaagaaagaatcatcat |
92 |
Q |
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| T |
33500584 |
ttcgccaaagatgttctttgcgaagaaagaatcatcat |
33500621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 33487992 - 33488068
Alignment:
| Q |
55 |
ttcgcctaagatcttctttgcgaagaaagaatcatcattattgacgaccgacattttatagatctccaatggacttt |
131 |
Q |
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| T |
33487992 |
ttcgcctgagatgttctttgcaaagaaaggatcaacatcattgatgaccgacactggattgatctccaatgcacttt |
33488068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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