View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8307_high_3 (Length: 486)

Name: NF8307_high_3
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8307_high_3
NF8307_high_3
[»] chr4 (20 HSPs)
chr4 (169-470)||(922454-922758)
chr4 (19-82)||(922841-922904)
chr4 (344-463)||(11197269-11197388)
chr4 (351-448)||(10396189-10396286)
chr4 (388-448)||(10396474-10396534)
chr4 (344-447)||(11196995-11197098)
chr4 (343-406)||(34946393-34946456)
chr4 (387-439)||(50002493-50002545)
chr4 (387-439)||(50630792-50630844)
chr4 (388-439)||(22183302-22183353)
chr4 (388-439)||(54936263-54936314)
chr4 (387-436)||(25483406-25483455)
chr4 (387-439)||(18932786-18932838)
chr4 (387-439)||(22028406-22028458)
chr4 (388-436)||(36608699-36608747)
chr4 (387-439)||(36629304-36629356)
chr4 (387-415)||(43827530-43827558)
chr4 (387-439)||(45496872-45496924)
chr4 (387-439)||(49302973-49303025)
chr4 (387-439)||(55933161-55933213)
[»] chr7 (13 HSPs)
chr7 (349-448)||(21416142-21416241)
chr7 (353-445)||(23569007-23569099)
chr7 (343-448)||(21416426-21416531)
chr7 (399-466)||(27598025-27598092)
chr7 (387-439)||(11845258-11845310)
chr7 (389-437)||(14681579-14681627)
chr7 (388-435)||(34218074-34218121)
chr7 (387-436)||(9901713-9901762)
chr7 (387-439)||(23416-23468)
chr7 (387-439)||(1085655-1085707)
chr7 (387-439)||(29157632-29157684)
chr7 (387-439)||(30245144-30245196)
chr7 (387-439)||(40094813-40094865)
[»] chr5 (13 HSPs)
chr5 (383-466)||(13042579-13042662)
chr5 (383-466)||(13112577-13112660)
chr5 (344-458)||(13042302-13042416)
chr5 (344-458)||(13112296-13112410)
chr5 (344-466)||(13043036-13043158)
chr5 (344-466)||(13113032-13113154)
chr5 (344-427)||(36389277-36389359)
chr5 (387-439)||(6500889-6500941)
chr5 (388-439)||(26074679-26074730)
chr5 (388-441)||(35150071-35150124)
chr5 (352-445)||(36388980-36389073)
chr5 (387-439)||(9498693-9498745)
chr5 (387-439)||(40296354-40296406)
[»] chr6 (12 HSPs)
chr6 (356-469)||(11637729-11637842)
chr6 (351-430)||(11638016-11638095)
chr6 (387-436)||(3058296-3058345)
chr6 (390-438)||(1846816-1846864)
chr6 (387-439)||(2377821-2377873)
chr6 (387-439)||(3409326-3409378)
chr6 (387-439)||(3415525-3415577)
chr6 (387-435)||(16107749-16107797)
chr6 (387-439)||(16454642-16454694)
chr6 (387-439)||(29518570-29518622)
chr6 (387-439)||(29518987-29519039)
chr6 (387-439)||(32741246-32741298)
[»] chr8 (9 HSPs)
chr8 (344-448)||(18829838-18829942)
chr8 (350-463)||(3671143-3671256)
chr8 (390-439)||(9483229-9483278)
chr8 (349-463)||(3670800-3670914)
chr8 (387-437)||(30441154-30441204)
chr8 (386-439)||(30359338-30359391)
chr8 (387-439)||(5915934-5915986)
chr8 (387-439)||(6876901-6876953)
chr8 (387-439)||(20870612-20870664)
[»] chr3 (14 HSPs)
chr3 (352-463)||(48127819-48127930)
chr3 (351-413)||(48127605-48127667)
chr3 (356-442)||(53596539-53596625)
chr3 (387-439)||(12114601-12114653)
chr3 (387-439)||(22303994-22304046)
chr3 (366-448)||(53596018-53596100)
chr3 (366-448)||(53596333-53596415)
chr3 (390-439)||(39389137-39389186)
chr3 (387-439)||(29644941-29644993)
chr3 (387-438)||(29644620-29644671)
chr3 (387-439)||(15772921-15772973)
chr3 (387-439)||(22303698-22303750)
chr3 (387-439)||(22304636-22304688)
chr3 (388-436)||(45395693-45395741)
[»] chr2 (12 HSPs)
chr2 (388-463)||(28226380-28226455)
chr2 (349-448)||(28226713-28226811)
chr2 (387-439)||(15511534-15511586)
chr2 (349-445)||(22062795-22062891)
chr2 (392-448)||(30219925-30219981)
chr2 (387-439)||(36178644-36178696)
chr2 (387-439)||(962665-962717)
chr2 (387-439)||(14745333-14745385)
chr2 (387-439)||(14745706-14745758)
chr2 (387-439)||(15880330-15880382)
chr2 (344-463)||(35448613-35448730)
chr2 (387-439)||(36784299-36784351)
[»] scaffold0078 (2 HSPs)
scaffold0078 (387-439)||(5424-5476)
scaffold0078 (388-440)||(5048-5100)
[»] chr1 (7 HSPs)
chr1 (387-439)||(32594755-32594807)
chr1 (387-439)||(39066239-39066291)
chr1 (387-439)||(44043811-44043863)
chr1 (388-439)||(17294644-17294695)
chr1 (387-440)||(26661937-26661990)
chr1 (387-436)||(45494013-45494062)
chr1 (387-435)||(29798270-29798318)
[»] scaffold0702 (1 HSPs)
scaffold0702 (387-439)||(553-605)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 169 - 470
Target Start/End: Complemental strand, 922758 - 922454
Alignment:
169 tagatttagtcaaaagtgtaggtcattctaatggataatacaaccgtaatcaaccctaataaacaaacaccagacacaggtacaacccaacgaactcgca 268  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
922758 tagatttagtcaaaagtgtaggtcattctaatggataatacaactgtaatcaaccctaataaacaaacactagacacaggtacaacccaacgaactcgca 922659  T
269 tacatgaaattgaaagnnnnnnnn---tggtgataactattttcaagcacaaaactagatcttcataaaatctgacaaagcgtttggagcggcaatgagt 365  Q
    |||||||||||||||            |||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |    
922658 tacatgaaattgaaaaggaaaaaaaaatggtgataactattttcaagcacaaaactagatctttataaaatctaacgaagcgtttggagcggcaatgact 922559  T
366 taaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctcttctacatctaacgtttgc 465  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
922558 taaacgtctaggatccgctaaaagagagacaccacactcttatccaaacccctaagacaatgggtttatgggtctcctctcttctatatctaacgtttgc 922459  T
466 ttcat 470  Q
    |||||    
922458 ttcat 922454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 922904 - 922841
Alignment:
19 tatattatacattatccgtgtgtaaatgtctgagtctaagtccatctttcatagatcaaaacat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
922904 tatattatacattatccgtgtgtaaatgtctgagtctaagtccatctttcatagatcaaaacat 922841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 463
Target Start/End: Complemental strand, 11197388 - 11197269
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcct 443  Q
    ||||||||||||||||||| | |||||  |||||| |  |||| |||||||||||||||||||| ||||| |||| || |||||||||||||||||||||    
11197388 agcgtttggagcggcaatgggctaaacacctaggaccagctaagagagagacaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcct 11197289  T
444 ctcttctacatctaacgttt 463  Q
    ||||| || ||| |||||||    
11197288 ctcttatatatccaacgttt 11197269  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 448
Target Start/End: Complemental strand, 10396286 - 10396189
Alignment:
351 ggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctctt 448  Q
    |||||||||| ||| |||||||||| || || |||| ||||||||||||| |||||| | ||| |||| || |||||||||||||||||| |||||||    
10396286 ggagcggcaacgagctaaacgtctatgacccgctaagagagagacaccaccctcttacctaaaaccctaaggcaatgggtttatgggtcttctctctt 10396189  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 10396534 - 10396474
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctctt 448  Q
    ||||||| |||||||||||||||||| |||| || ||||||||||||||||||||||||||    
10396534 agagagagaccacactcttatccaaaaccctaaggcaatgggtttatgggtctcctctctt 10396474  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 447
Target Start/End: Complemental strand, 11197098 - 11196995
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcct 443  Q
    ||||||||||||||||||| | |||||  |||||| |  |||| ||||||||||| |||||||| | |||  ||| || ||||||||||| |||||||||    
11197098 agcgtttggagcggcaatgggctaaacacctaggaccagctaagagagagacacctcactcttacctaaaatcctaaggcaatgggtttaagggtctcct 11196999  T
444 ctct 447  Q
    ||||    
11196998 ctct 11196995  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 34946393 - 34946456
Alignment:
343 aagcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactctt 406  Q
    ||||| |||||||||||||  | ||||||||||||| ||||||| |||||||||| ||||||||    
34946393 aagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactctt 34946456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 50002545 - 50002493
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | ||||||||| ||||||||||    
50002545 aagagagacaccacactcttacccaaaaccttaagacaatggatttatgggtc 50002493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 50630792 - 50630844
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || |||||||||||||||||    
50630792 aagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 50630844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Original strand, 22183302 - 22183353
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||| ||||||||||||||||| || | || |||||||||||||||||    
22183302 agagagacgccacactcttatccaaaaccttaaggcaatgggtttatgggtc 22183353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 54936314 - 54936263
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||||||||||||||| ||||| || | || |||||||||||||||||    
54936314 agagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 54936263  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 25483455 - 25483406
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgg 436  Q
    ||||||||||||||||||||| ||||| || | || ||||||||||||||    
25483455 aagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgg 25483406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 18932786 - 18932838
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| | ||| || | || |||||||||||||||||    
18932786 aagagagacaccacactcttacctaaaaccttaaggcaatgggtttatgggtc 18932838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 22028406 - 22028458
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| |  | |||||||| |||||||||||    
22028406 aagagagacaccacactcttacccaaaacattaagacaatgagtttatgggtc 22028458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 36608699 - 36608747
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgg 436  Q
    |||||||||||||||||||| ||||| || | ||||||||| |||||||    
36608699 agagagacaccacactcttacccaaaaccttaagacaatggatttatgg 36608747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 36629356 - 36629304
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || ||||| |||||||||||    
36629356 aagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtc 36629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 43827558 - 43827530
Alignment:
387 aagagagacaccacactcttatccaaacc 415  Q
    |||||||||||||||||||||||||||||    
43827558 aagagagacaccacactcttatccaaacc 43827530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 45496924 - 45496872
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | |||||||| |||||| ||||    
45496924 aagagagacaccacactcttacccaaaaccttaagacaatgagtttataggtc 45496872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 49303025 - 49302973
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||| |||||||||||||| ||||| || | || |||||||||||||||||    
49303025 aagagatacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 49302973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 55933161 - 55933213
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| |  | || |||||||||||||||||    
55933161 aagagagacaccacactcttacccaaaactttaaggcaatgggtttatgggtc 55933213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 448
Target Start/End: Original strand, 21416142 - 21416241
Alignment:
349 ttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctctt 448  Q
    ||||||||||||||   ||||| ||||||| || |||| |||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||    
21416142 ttggagcggcaatggactaaacatctaggacccgctaagagagagacaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctctt 21416241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 445
Target Start/End: Original strand, 23569007 - 23569099
Alignment:
353 agcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctct 445  Q
    |||||||||||| ||||||||||||| |||||||| |||||||| |||||||||| ||||| || | || ||||||||||||||| |||||||    
23569007 agcggcaatgagctaaacgtctaggacccactaaatgagagacatcacactcttacccaaaaccttaaggcaatgggtttatgggcctcctct 23569099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 448
Target Start/End: Original strand, 21416426 - 21416531
Alignment:
343 aagcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcc 442  Q
    ||||| |||||||| ||||| ||| ||| ||||||| || |||| |||||||||||||| ||||| ||||| |||  |||||| | ||||||||||||||    
21416426 aagcgcttggagcgacaatgggttgaacatctaggacccgctaagagagagacaccacattcttacccaaaacccaaagacaacgagtttatgggtctcc 21416525  T
443 tctctt 448  Q
     |||||    
21416526 gctctt 21416531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 466
Target Start/End: Complemental strand, 27598092 - 27598025
Alignment:
399 acactcttatccaaacccctgagacaatgggtttatgggtctcctctcttctacatctaacgtttgct 466  Q
    |||||||||  |||| |||| ||||||||||||||||||||||||||||| || ||| ||||||||||    
27598092 acactcttacgcaaaaccctaagacaatgggtttatgggtctcctctcttatatatccaacgtttgct 27598025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 11845310 - 11845258
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||||||||| || | || |||||| ||||||||||    
11845310 aagagagacaccacactcttatccaaaaccttaaggcaatggatttatgggtc 11845258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 14681627 - 14681579
Alignment:
389 gagagacaccacactcttatccaaacccctgagacaatgggtttatggg 437  Q
    ||||||||||||||||||| ||||| || | ||||||||||||||||||    
14681627 gagagacaccacactcttacccaaaaccttaagacaatgggtttatggg 14681579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 34218074 - 34218121
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatg 435  Q
    |||||||||||||||||||| ||||| || | ||||||||||||||||    
34218074 agagagacaccacactcttacccaaaaccttaagacaatgggtttatg 34218121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 9901762 - 9901713
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgg 436  Q
    ||||||||||||||||||||| ||||| || | |||||||| ||||||||    
9901762 aagagagacaccacactcttacccaaaaccttaagacaatgagtttatgg 9901713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 23416 - 23468
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || |||| ||||||||||||    
23416 aagagagacaccacactcttacccaaaaccttaaggcaataggtttatgggtc 23468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 1085655 - 1085707
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||| ||||||||||| ||||| || | || |||||||||||||||||    
1085655 aagagagacgccacactcttacccaaaaccttaaggcaatgggtttatgggtc 1085707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 29157684 - 29157632
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || |||||| ||||||||||    
29157684 aagagagacaccacactcttacccaaaaccttaaggcaatggatttatgggtc 29157632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 30245196 - 30245144
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || ||||| |||||||||||    
30245196 aagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtc 30245144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 40094813 - 40094865
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||| ||||||||||| ||||| || | |||| |||||||||||||||    
40094813 aagagagacgccacactcttacccaaaaccttaagacgatgggtttatgggtc 40094865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 466
Target Start/End: Complemental strand, 13042662 - 13042579
Alignment:
383 ctaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctcttctacatctaacgtttgct 466  Q
    |||| |||||||||||||||||||||||||| || | || |||||||||||||||||||||||||| || |||||| |||||||    
13042662 ctaagagagagacaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgct 13042579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 466
Target Start/End: Complemental strand, 13112660 - 13112577
Alignment:
383 ctaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctcttctacatctaacgtttgct 466  Q
    |||| ||| |||||||||||||||||||||| || | ||||||||||||||||||||||||||||| || |||||| |||||||    
13112660 ctaagagaaagacaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgct 13112577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 458
Target Start/End: Complemental strand, 13042416 - 13042302
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcct 443  Q
    |||| |||||||| ||||| ||||||||||||||| || |||| ||||||||| |||||||||| | ||| | || |||| |||||||| ||||||||||    
13042416 agcgcttggagcgacaatgggttaaacgtctaggacccgctaagagagagacatcacactcttaccaaaaactctaagacgatgggtttttgggtctcct 13042317  T
444 ctcttctacatctaa 458  Q
    | ||| || ||||||    
13042316 cacttatatatctaa 13042302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 458
Target Start/End: Complemental strand, 13112410 - 13112296
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcct 443  Q
    |||| |||||||| ||||| ||||||||||||||| || |||| ||||||||| |||||||||| | ||| | || |||| |||||||| ||||||||||    
13112410 agcgcttggagcgacaatgggttaaacgtctaggacccgctaagagagagacatcacactcttaccaaaaactctaagacgatgggtttttgggtctcct 13112311  T
444 ctcttctacatctaa 458  Q
    | ||| || ||||||    
13112310 cacttatatatctaa 13112296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 466
Target Start/End: Complemental strand, 13043158 - 13043036
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcct 443  Q
    |||| ||||||| |||||| | |||| |||||||| |  |||| ||||||||||||  |||||| |||||  ||| |||  |||||||||||||||||||    
13043158 agcgcttggagcagcaatgggctaaatgtctaggacctgctaagagagagacaccaatctcttacccaaaatcctaagatgatgggtttatgggtctcct 13043059  T
444 ctcttctacatctaacgtttgct 466  Q
    ||||| || ||| || |||||||    
13043058 ctcttatatatccaatgtttgct 13043036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 466
Target Start/End: Complemental strand, 13113154 - 13113032
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcct 443  Q
    |||| ||||||| |||||| | |||| |||||||| |  |||| ||||||||||||  |||||| |||||  ||| |||  |||||||||||||||||||    
13113154 agcgcttggagcagcaatgggctaaatgtctaggacctgctaagagagagacaccaatctcttacccaaaatcctaagatgatgggtttatgggtctcct 13113055  T
444 ctcttctacatctaacgtttgct 466  Q
    ||||| || ||| || |||||||    
13113054 ctcttatatatccaatgtttgct 13113032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 427
Target Start/End: Original strand, 36389277 - 36389359
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatg 427  Q
    |||| |||||||||||||| |||||||||| |||| ||||||||||||||||| |||||  ||| ||||| |||| || |||||    
36389277 agcgcttggagcggcaatg-gttaaacgtccaggacccactaaaagagagacatcacaccgttacccaaaaccctaaggcaatg 36389359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 6500941 - 6500889
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||||||||| || | || ||||| |||||||||||    
6500941 aagagagacaccacactcttatccaaaaccttaaggcaatgagtttatgggtc 6500889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 26074730 - 26074679
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||||||||||||||| ||||| || | || |||||||||||||||||    
26074730 agagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 26074679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 441
Target Start/End: Complemental strand, 35150124 - 35150071
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctc 441  Q
    |||||||||||||||| ||| ||||| || | ||||||||| ||||||||||||    
35150124 agagagacaccacacttttacccaaaaccttaagacaatggatttatgggtctc 35150071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 445
Target Start/End: Original strand, 36388980 - 36389073
Alignment:
352 gagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctct 445  Q
    ||||||||||| | |||| ||||| || |  |||| ||||| |||||||||||| | ||||| |||| || || || |||||||||||||||||    
36388980 gagcggcaatgcgctaaatgtctaagaccagctaagagagaaacaccacactctgacccaaaaccctaaggcactgagtttatgggtctcctct 36389073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 9498693 - 9498745
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| |||||  | | || |||||||||||||||||    
9498693 aagagagacaccacactcttacccaaaatcttaaggcaatgggtttatgggtc 9498745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 40296354 - 40296406
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| ||   || |||||||||||||||||    
40296354 aagagagacaccacactcttacccaaaacctcaaggcaatgggtttatgggtc 40296406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 469
Target Start/End: Original strand, 11637729 - 11637842
Alignment:
356 ggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctcttctacatc 455  Q
    ||||||| | |||| || |||||||| ||| |||||||||||||||||||||||||||  | | ||||||||||||||||||| ||||||||| || ||     
11637729 ggcaatgggctaaatgtttaggatccgctataagagagacaccacactcttatccaaaatcttaagacaatgggtttatgggtatcctctcttatatatt 11637828  T
456 taacgtttgcttca 469  Q
     || ||||||||||    
11637829 caatgtttgcttca 11637842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 11638016 - 11638095
Alignment:
351 ggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggt 430  Q
    ||||||| |||| ||||||||||||||| || | || |||||||||||| ||||||| |||||  ||| || ||||||||    
11638016 ggagcggtaatgggttaaacgtctaggacccgcaaagagagagacaccatactcttacccaaaatcctaaggcaatgggt 11638095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 3058345 - 3058296
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgg 436  Q
    ||||||||||||||||||||| ||||| || | || ||||||||||||||    
3058345 aagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgg 3058296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 1846864 - 1846816
Alignment:
390 agagacaccacactcttatccaaacccctgagacaatgggtttatgggt 438  Q
    |||||||||||||||||||||||| || | || |||||| |||||||||    
1846864 agagacaccacactcttatccaaaaccttaaggcaatggatttatgggt 1846816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 2377873 - 2377821
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||| |||||||||||||||| ||||| || | || |||||||||||||||||    
2377873 aagaaagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 2377821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 3409378 - 3409326
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || ||||| |||||||||||    
3409378 aagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtc 3409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 3415577 - 3415525
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| | ||| || | || |||||||||||||||||    
3415577 aagagagacaccacactcttaccaaaaaccttaaggcaatgggtttatgggtc 3415525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 16107797 - 16107749
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatg 435  Q
    ||||||||||||||||||||| ||||| || | || |||||||||||||    
16107797 aagagagacaccacactcttacccaaaaccttaaggcaatgggtttatg 16107749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 16454694 - 16454642
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||| |||||||||||||||||  | | || |||||||||||||||||    
16454694 aagagagacgccacactcttatccaaaatcttaaggcaatgggtttatgggtc 16454642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 29518622 - 29518570
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | ||  ||||||||||||||||    
29518622 aagagagacaccacactcttacccaaaaccttaaggtaatgggtttatgggtc 29518570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 29519039 - 29518987
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | ||  ||||||||||||||||    
29519039 aagagagacaccacactcttacccaaaaccttaaggtaatgggtttatgggtc 29518987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 32741298 - 32741246
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | ||  ||||||||||||||||    
32741298 aagagagacaccacactcttacccaaaaccttaaggtaatgggtttatgggtc 32741246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 448
Target Start/End: Original strand, 18829838 - 18829942
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcct 443  Q
    |||| |||||||||||||| | ||||||||||||| || |||| ||| ||| ||||||||||||||||||  ||| || |||||||||||| ||| | ||    
18829838 agcgcttggagcggcaatgggctaaacgtctaggacccgctaagagaaagataccacactcttatccaaaatcctaaggcaatgggtttataggtttact 18829937  T
444 ctctt 448  Q
    |||||    
18829938 ctctt 18829942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 463
Target Start/End: Original strand, 3671143 - 3671256
Alignment:
350 tggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctcttc 449  Q
    |||||||||||||||  ||| ||||| || || |||| |||||||||||| ||| ||||||||| |||| || || | ||||||||| |||||||||||     
3671143 tggagcggcaatgagcgaaatgtctaagacccgctaagagagagacaccaaactattatccaaaaccctaaggcagtaggtttatggttctcctctctta 3671242  T
450 tacatctaacgttt 463  Q
    || ||| |||||||    
3671243 tatatccaacgttt 3671256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 9483229 - 9483278
Alignment:
390 agagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||||||||||||| ||||| || | ||||||||||||||||||||    
9483229 agagacaccacactcttacccaaaaccttaagacaatgggtttatgggtc 9483278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 463
Target Start/End: Original strand, 3670800 - 3670914
Alignment:
349 ttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctctt 448  Q
    ||||||||| || | || ||||||||| || || | || |||||||||||||| | ||||||||| |||| ||  | ||| |||||||||||| ||||||    
3670800 ttggagcggtaacgggtgaaacgtctaagacccgccaagagagagacaccacattattatccaaaaccctaaggtagtggatttatgggtctcatctctt 3670899  T
449 ctacatctaacgttt 463  Q
     || ||| |||||||    
3670900 atatatccaacgttt 3670914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 30441204 - 30441154
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatggg 437  Q
    ||||||||||||||||||||| ||||| || | || |||||||||||||||    
30441204 aagagagacaccacactcttacccaaaaccttaaggcaatgggtttatggg 30441154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 30359391 - 30359338
Alignment:
386 aaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||||||||||||||||| ||||| || | || | |||||||||||||||    
30359391 aaagagagacaccacactcttacccaaaaccttaaggctatgggtttatgggtc 30359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 5915986 - 5915934
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || ||||| |||||||||||    
5915986 aagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtc 5915934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 6876901 - 6876953
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||| |||||||||||||| ||||| |||| |||||||| || ||||||||    
6876901 aagagaaacaccacactcttacccaaaaccctaagacaatgagtgtatgggtc 6876953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 20870612 - 20870664
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||||||||||||||||||||||  | | || || ||||||||||||||    
20870612 aagagagacaccacactcttatccaaaatcttaaggcagtgggtttatgggtc 20870664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 463
Target Start/End: Original strand, 48127819 - 48127930
Alignment:
352 gagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctcttcta 451  Q
    |||||||||||   ||||||||||||| |  |||| ||| |||||||||||||||||||||| |  | |  |||||||||||||||||||||||||| ||    
48127819 gagcggcaatggactaaacgtctaggaccatctaagagaaagacaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttata 48127918  T
452 catctaacgttt 463  Q
     ||| |||||||    
48127919 tatcaaacgttt 48127930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 48127605 - 48127667
Alignment:
351 ggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaa 413  Q
    |||| ||||||| ||||||||||||||||||| ||| ||||||||||||||| |||| |||||    
48127605 ggagtggcaatgggttaaacgtctaggatccattaagagagagacaccacacacttacccaaa 48127667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 442
Target Start/End: Complemental strand, 53596625 - 53596539
Alignment:
356 ggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcc 442  Q
    ||||||||| ||||||||||||| || |||  |||||||||||||||||||| | |||  | | || ||||||||||||||||||||    
53596625 ggcaatgagctaaacgtctaggacccgctatgagagagacaccacactcttacctaaaatcttaagtcaatgggtttatgggtctcc 53596539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 12114601 - 12114653
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||||||||||    
12114601 aagagagacaccacactcttacccaaaaccttaagacaatgggtttatgggtc 12114653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 22303994 - 22304046
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||||||||| || | || |||||||||||||||||    
22303994 aagagagacaccacactcttatccaaaaccttaaggcaatgggtttatgggtc 22304046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 53596100 - 53596018
Alignment:
366 taaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctctt 448  Q
    ||||| ||||||||||  ||  |||||||||||||||||||| ||||| || | ||  || ||||||||||||||||||||||    
53596100 taaacatctaggatccgttatgagagagacaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctctt 53596018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 53596415 - 53596333
Alignment:
366 taaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctctt 448  Q
    ||||| ||||||||||  ||  |||||||||||||||||||| ||||| || | ||  || ||||||||||||||||||||||    
53596415 taaacatctaggatccgttatgagagagacaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctctt 53596333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 39389186 - 39389137
Alignment:
390 agagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||||||||||||| ||||| || | ||||||||||||||||||||    
39389186 agagacaccacactcttacccaaaaccttaagacaatgggtttatgggtc 39389137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 29644941 - 29644993
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||| ||||||||||| ||||| || | ||||||||||||||||||||    
29644941 aagagagacgccacactcttacccaaaaccttaagacaatgggtttatgggtc 29644993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 29644620 - 29644671
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggt 438  Q
    ||||||||| ||||||||||| ||||| || | |||||||||||||||||||    
29644620 aagagagacgccacactcttacccaaaaccttaagacaatgggtttatgggt 29644671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 15772973 - 15772921
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||||||||| || | |  ||||| |||||||||||    
15772973 aagagagacaccacactcttatccaaaaccttaaagcaatgagtttatgggtc 15772921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 22303698 - 22303750
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||| |||||||||||||| ||||| || | || |||||||||||||||||    
22303698 aagagaaacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 22303750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 22304688 - 22304636
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || ||||| |||||||||||    
22304688 aagagagacaccacactcttacccaaaaccttaaggcaatgtgtttatgggtc 22304636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 45395693 - 45395741
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgg 436  Q
    |||||||||||||||||||| ||||| |  | |||||||||||||||||    
45395693 agagagacaccacactcttacccaaaacattaagacaatgggtttatgg 45395741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 463
Target Start/End: Complemental strand, 28226455 - 28226380
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctcttctacatctaacgttt 463  Q
    |||||||||||||||||||| | ||| |||| |||||||| |||||||||||||||||||| || ||| |||||||    
28226455 agagagacaccacactcttacctaaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgttt 28226380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 448
Target Start/End: Complemental strand, 28226811 - 28226713
Alignment:
349 ttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctctt 448  Q
    |||||| | ||||| | ||||||||||||||||   || |||||||||||||||||||| |||||  ||| |||||||||||||||| ||||||||||||    
28226811 ttggagtgacaatgtgctaaacgtctaggatccgtaaagagagagacaccacactctta-ccaaaaacctaagacaatgggtttatgagtctcctctctt 28226713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 15511534 - 15511586
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| |||||  | | ||||||||||||||||||||    
15511534 aagagagacaccacactcttacccaaaatcttaagacaatgggtttatgggtc 15511586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 22062795 - 22062891
Alignment:
349 ttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctct 445  Q
    |||||||||||||||| ||||| | ||||| ||  ||| ||||| |||||||||||||| ||||| || | | |||||  |||||||||||| ||||    
22062795 ttggagcggcaatgagctaaacatttaggacccgttaagagagaaacaccacactcttacccaaaaccataaaacaataagtttatgggtcttctct 22062891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 30219925 - 30219981
Alignment:
392 agacaccacactcttatccaaacccctgagacaatgggtttatgggtctcctctctt 448  Q
    ||||||||||||| ||  |||| |||| ||||||| |||||||||||||||||||||    
30219925 agacaccacactcctacacaaaaccctaagacaattggtttatgggtctcctctctt 30219981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 36178644 - 36178696
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | || |||||||||||||||||    
36178644 aagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 36178696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 962717 - 962665
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||| |||| |||||||||| ||||| || | ||||||||||||||||||||    
962717 aagagtgacaacacactcttacccaaaaccttaagacaatgggtttatgggtc 962665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 14745333 - 14745385
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||| ||||||||||| ||||| || | || |||||||||||||||||    
14745333 aagagagacgccacactcttacccaaaaccttaaggcaatgggtttatgggtc 14745385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 14745706 - 14745758
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||| ||||||||||| ||||| || | || |||||||||||||||||    
14745706 aagagagacgccacactcttacccaaaaccttaaggcaatgggtttatgggtc 14745758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 15880382 - 15880330
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||| ||||||||||| ||||| || | || |||||||||||||||||    
15880382 aagagagacgccacactcttacccaaaaccttaaggcaatgggtttatgggtc 15880330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 463
Target Start/End: Original strand, 35448613 - 35448730
Alignment:
344 agcgtttggagcggcaatgagttaaacgtctaggatccactaaaagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtctcct 443  Q
    |||| |||||||||||||    |||||||||| ||||||||||  |||||||||| |||||||| | ||| | || || ||||   ||||| ||||||||    
35448613 agcgcttggagcggcaatagactaaacgtctaagatccactaa--gagagacaccgcactcttaacaaaaactctaaggcaattaatttataggtctcct 35448710  T
444 ctcttctacatctaacgttt 463  Q
    ||||| || ||| |||||||    
35448711 ctcttatatatcaaacgttt 35448730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 36784299 - 36784351
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||| ||||| ||||||||| || | |||||| |||||||||||||    
36784299 aagagagacacaacacttttatccaaaaccttaagacaaagggtttatgggtc 36784351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 5476 - 5424
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||||||||||||||||||||||  | | || |||||||||||||||||    
5476 aagagagacaccacactcttatccaaaatcttaaggcaatgggtttatgggtc 5424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 5100 - 5048
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgggtct 440  Q
    |||||||||||||||||||| ||||| || | || ||||| ||||||||||||    
5100 agagagacaccacactcttacccaaaaccataaggcaatgagtttatgggtct 5048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 32594755 - 32594807
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| ||||| || | |||||||| |||||||||||    
32594755 aagagagacaccacactcttacccaaaaccttaagacaatgagtttatgggtc 32594807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 39066239 - 39066291
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||||||||| || | ||||||||  ||||||||||    
39066239 aagagagacaccacactcttatccaaaaccttaagacaatgattttatgggtc 39066291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 44043811 - 44043863
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    ||||||||||||||||||||| |||||  | | ||||||||||||||||||||    
44043811 aagagagacaccacactcttacccaaaatcttaagacaatgggtttatgggtc 44043863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 17294695 - 17294644
Alignment:
388 agagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
    |||||||||||||||||||| ||||| || | || |||||||||||||||||    
17294695 agagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 17294644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 26661937 - 26661990
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtct 440  Q
    ||||||||||||||||||||| ||||| || | || |||| |||||||||||||    
26661937 aagagagacaccacactcttacccaaaaccttaaggcaatcggtttatgggtct 26661990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 45494013 - 45494062
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgg 436  Q
    ||||||||||||||||||||||||||| |  | || ||||||||||||||    
45494013 aagagagacaccacactcttatccaaaactttaaggcaatgggtttatgg 45494062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 29798318 - 29798270
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatg 435  Q
    ||||||||||||||||||||||||||  || | || |||||||||||||    
29798318 aagagagacaccacactcttatccaagaccttaaggcaatgggtttatg 29798270  T

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Target: scaffold0702 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 553 - 605
Alignment:
387 aagagagacaccacactcttatccaaacccctgagacaatgggtttatgggtc 439  Q
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553 aagaaagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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