View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8307_high_8 (Length: 280)

Name: NF8307_high_8
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8307_high_8
NF8307_high_8
[»] chr8 (6 HSPs)
chr8 (22-261)||(15165875-15166114)
chr8 (22-261)||(15080134-15080373)
chr8 (136-261)||(24589893-24590018)
chr8 (135-211)||(18160485-18160561)
chr8 (176-257)||(12563762-12563843)
chr8 (135-211)||(22465441-22465517)
[»] chr5 (1 HSPs)
chr5 (141-253)||(18008806-18008918)
[»] chr4 (2 HSPs)
chr4 (137-250)||(11534940-11535053)
chr4 (137-250)||(11452432-11452546)
[»] scaffold0758 (1 HSPs)
scaffold0758 (137-211)||(1013-1087)
[»] chr1 (2 HSPs)
chr1 (179-257)||(34523186-34523264)
chr1 (138-250)||(9331132-9331244)
[»] chr3 (1 HSPs)
chr3 (135-211)||(18702806-18702882)
[»] chr7 (1 HSPs)
chr7 (135-211)||(16157448-16157524)
[»] scaffold0273 (1 HSPs)
scaffold0273 (176-211)||(21663-21698)
[»] scaffold0863 (1 HSPs)
scaffold0863 (135-211)||(1718-1794)
[»] scaffold0453 (1 HSPs)
scaffold0453 (135-211)||(4273-4349)
[»] scaffold0193 (1 HSPs)
scaffold0193 (135-211)||(11330-11406)
[»] chr6 (1 HSPs)
chr6 (135-211)||(19956141-19956217)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 15165875 - 15166114
Alignment:
Q  22 aatgtttttctaggggtgcttcagacgttgcactagcttctgaaccattagatgcaccaataaattctgaagcttgttcaaattctaaagcatcttcagt 121  Q
    |||||| ||||| | ||||||||||  ||||||||||||||||||||| | | ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  15165875 aatgttcttctatgtgtgcttcagagtttgcactagcttctgaaccatcataagcaccaataaattctaaagcttgttcagattctaaagcatcttcagt 15165974  T
Q  122 gatttaaatctgggcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaaccatgatagtt 221  Q
    ||| ||||||| ||||||| |||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  15165975 gatctaaatctcggcaaaattttcaactagctctgatattttatttttaggttttttgtcatcaaatttgatgtgtattgattcttcaaccatgttagtt 15166074  T
Q  222 ttaaaattatacactctatatgcctttgagcgttcagagt 261  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  15166075 ttaaaattatacactttatatgcctttgagcgttcagagt 15166114  T

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Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 15080373 - 15080134
Alignment:
Q  22 aatgtttttctaggggtgcttcagacgttgcactagcttctgaaccattagatgcaccaataaattctgaagcttgttcaaattctaaagcatcttcagt 121  Q
    |||||| ||||| | ||||||||||  |||||||||||||||||||||   | ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  15080373 aatgttcttctatgtgtgcttcagagtttgcactagcttctgaaccatcttaagcaccaataaattctaaagcttgttcagattctaaagcatcttcagt 15080274  T
Q  122 gatttaaatctgggcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaaccatgatagtt 221  Q
    ||| ||||||| ||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  15080273 gatctaaatctcggcaaaattttcaactagctctgacattttatttttaggttttttgtcatcaaatttgatgtgtattaattcttcaatcatgttagtt 15080174  T
Q  222 ttaaaattatacactctatatgcctttgagcgttcagagt 261  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15080173 ttaaaattatacactctatatgcctttgagcgttcagagt 15080134  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 24589893 - 24590018
Alignment:
Q  136 caaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaaccatgatagttttaaaattatacac 235  Q
    ||||||| |||||||||| |||||||||||| ||| ||| ||| ||||||||||| | || |||| ||||||||||  || |||| | ||||||||||||    
T  24589893 caaaactgtcaactagctttgacattttattgtcatgctctttttcatcaaattttacgtctattaattcttcaactgtgttagtctcaaaattatacac 24589992  T
Q  236 tctatatgcctttgagcgttcagagt 261  Q
    | | |||| |||| ||||||||||||    
T  24589993 tttgtatgtctttaagcgttcagagt 24590018  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 18160485 - 18160561
Alignment:
Q  135 gcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    |||||||||||||||||||||  ||||| ||| |||  |||||||||||||||||||||||| ||||||||||||||    
T  18160485 gcaaaactttcaactagctctagcatttcattgtcagactttttgtcatcaaatttgatgtgcattgattcttcaac 18160561  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 12563843 - 12563762
Alignment:
Q  176 tttgtcatcaaatttgatgtgtattgattcttcaaccatgatagttttaaaattatacactctatatgcctttgagcgttca 257  Q
    |||||||||||||||||||||||||  |||||||||  |  || |||||||||||||| || | |||||| | |||||||||    
T  12563843 tttgtcatcaaatttgatgtgtattagttcttcaactgtattaattttaaaattatacgctatgtatgccatagagcgttca 12563762  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 22465517 - 22465441
Alignment:
Q  135 gcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    |||||||||||| || |||||||  ||| |||| || ||| ||| ||||||||||| | ||| ||||||||||||||    
T  22465517 gcaaaactttcaccttgctctgaagtttcatttccaggctctttttcatcaaatttaacgtgcattgattcttcaac 22465441  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 18008806 - 18008918
Alignment:
Q  141 ctttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaaccatgatagttttaaaattatacactctat 240  Q
    |||||||||||||||||||||||||| |||  ||||| ||||||||| ||||||||||||||||||||||   |  |||||||| ||||||||||| ||     
T  18008806 ctttcaactagctctgacattttattatcagacttttggtcatcaaaattgatgtgtattgattcttcaattgtattagttttagaattatacactatac 18008905  T
Q  241 atgcctttgagcg 253  Q
    |||| ||||||||    
T  18008906 atgcttttgagcg 18008918  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 11534940 - 11535053
Alignment:
Q  137 aaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaaccatgatagttttaaaattatacact 236  Q
    ||||||||||||||||| ||| |||||||| ||| ||| |||||||| |||||||||||| ||| ||| ||| || | | |||||| |||||||||||||    
T  11534940 aaaactttcaactagctttgaaattttattgtcatgctctttgtcattaaatttgatgtgcattaattattccactaagttagtttcaaaattatacact 11535039  T
Q  237 ctatatgcctttga 250  Q
     | |||| ||||||    
T  11535040 ttgtatgtctttga 11535053  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 11452546 - 11452432
Alignment:
Q  137 aaaactttc-aactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaaccatgatagttttaaaattatacac 235  Q
    ||||||||| |||||||| ||| |||||||| ||| ||| |||||||| |||||||||||| ||||||| ||| || | | |||||| ||||||||||||    
T  11452546 aaaactttctaactagctttgaaattttattgtcatgctctttgtcattaaatttgatgtgcattgattattccactaagttagtttcaaaattatacac 11452447  T
Q  236 tctatatgcctttga 250  Q
    | | |||| ||||||    
T  11452446 tttgtatgtctttga 11452432  T

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Target: scaffold0758 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 1013 - 1087
Alignment:
Q  137 aaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    ||||||||||||||||||||  |||||| ||  | |||| |||||||||||||||||||| ||||||||||||||    
T  1013 aaaactttcaactagctctggaattttacttctaggcttcttgtcatcaaatttgatgtgaattgattcttcaac 1087  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 34523264 - 34523186
Alignment:
Q  179 gtcatcaaatttgatgtgtattgattcttcaaccatgatagttttaaaattatacactctatatgcctttgagcgttca 257  Q
    |||||| ||||||||||||||| |||||| ||| ||| |||||| ||||||||||||||| ||| |||||||| |||||    
T  34523264 gtcatccaatttgatgtgtattaattctttaacaatgttagtttcaaaattatacactctgtatacctttgagtgttca 34523186  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 9331244 - 9331132
Alignment:
Q  138 aaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaaccatgatagttttaaaattatacactc 237  Q
    ||||| || |||||||| |||||||  || | | ||| ||| |||||||||||  |||||||||||||||  || ||  |||||| | |||||||||||     
T  9331244 aaactatccactagctccgacatttgtttgttaggctctttatcatcaaatttattgtgtattgattctttcactatattagtttgagaattatacactt 9331145  T
Q  238 tatatgcctttga 250  Q
    | |||||||||||    
T  9331144 tgtatgcctttga 9331132  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 18702882 - 18702806
Alignment:
Q  135 gcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    |||||||||| ||||||||| |  |||| | || || ||| ||||||||||||||||||||| ||||||||||||||    
T  18702882 gcaaaactttgaactagctccgtaatttcacttccaggctctttgtcatcaaatttgatgtgcattgattcttcaac 18702806  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 16157524 - 16157448
Alignment:
Q  135 gcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    |||||| |||||||||||||||  |||| | || ||||||  |||||| |||||||||| || ||||||||||||||    
T  16157524 gcaaaaatttcaactagctctggaatttcacttccaagctccttgtcaccaaatttgatatgcattgattcttcaac 16157448  T

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Target: scaffold0273 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 21663 - 21698
Alignment:
Q  176 tttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21663 tttgtcatcaaatttgatgtgcattgattcttcaac 21698  T

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Target: scaffold0863 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 1794 - 1718
Alignment:
Q  135 gcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    |||||||||||| || ||||||   |||||||| || ||| ||||||||||||||| || ||  |||||||||||||    
T  1794 gcaaaactttcatcttgctctggagttttatttccaggctctttgtcatcaaatttaatctgcgttgattcttcaac 1718  T

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Target: scaffold0453 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 4273 - 4349
Alignment:
Q  135 gcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    |||||||||||| || |||||||  ||| | || ||  || ||||||||||||||| ||||| ||||||||||||||    
T  4273 gcaaaactttcatcttgctctgaagtttcacttccagactctttgtcatcaaatttaatgtgcattgattcttcaac 4349  T

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Target: scaffold0193 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 11330 - 11406
Alignment:
Q  135 gcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    |||||||||||| || |||||||  ||| ||||  | ||| ||||||||||||||| | ||| ||||||||||||||    
T  11330 gcaaaactttcatcttgctctgaagtttcatttctaggctctttgtcatcaaatttaacgtgcattgattcttcaac 11406  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 19956217 - 19956141
Alignment:
Q  135 gcaaaactttcaactagctctgacattttattttcaagctttttgtcatcaaatttgatgtgtattgattcttcaac 211  Q
    |||||||||||| || ||||||   ||| | || || ||| ||||||||||||||| ||||| ||||||||||||||    
T  19956217 gcaaaactttcatcttgctctggagtttcacttccaggctctttgtcatcaaattttatgtgcattgattcttcaac 19956141  T

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