View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8307_low_11 (Length: 257)
Name: NF8307_low_11
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8307_low_11 |
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| [»] chr3 (6 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 17953611 - 17953374
Alignment:
| Q |
20 |
gagaggagtccaatgatcatcacattaagctacgaaaaactaaataaacggaattaaacactacatcttatgactcttacttaaaaaacacacactttgc |
119 |
Q |
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| T |
17953611 |
gagaggagtccaataatcatcacattaagctacgaaaaactaaataaacggaattaaacactacatcttatgactcttacttaaaaaacacacactttgc |
17953512 |
T |
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| Q |
120 |
caaaataattagacatgcttttgtgaataaagtgagaatctaattgcttagtatctatttatattttccaaaataatttcagcttaggagaccaactata |
219 |
Q |
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| T |
17953511 |
caaaataattagacatgcttttgtgaataaagtgagaatctaattgcttagtatctgtttatattttccaaaataatttcagcttaggagaccaactata |
17953412 |
T |
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| Q |
220 |
atccatagatttcacaagcatttcataatgtttattca |
257 |
Q |
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| T |
17953411 |
atccatagatttcacaagcatttcataatgtttattca |
17953374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 17721804 - 17721903
Alignment:
| Q |
147 |
taaagtgagaatctaattgcttagtatctatttatattttccaaaataatttcagcttaggagaccaactataatccatagatttcacaagcatttcata |
246 |
Q |
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| T |
17721804 |
taaagtgagaatctaattgcttagtatct-tttatgttttccaagataatttcagcttaggagaccaactataatccatagatttcacaatcatttcata |
17721902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 19023033 - 19023132
Alignment:
| Q |
147 |
taaagtgagaatctaattgcttagtatctatttatattttccaaaataatttcagcttaggagaccaactataatccatagatttcacaagcatttcata |
246 |
Q |
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| T |
19023033 |
taaagtgagaatctaattgcttagtatct-tttatgttttccaagataatttcagcttaggagaccaactataatccatagatttcacaatcatttcata |
19023131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 15021036 - 15021113
Alignment:
| Q |
181 |
tattttccaaaataatttca-gcttaggagaccaactataatccatagatttcacaagcatttcataatgtttattca |
257 |
Q |
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| T |
15021036 |
tattttccaaaatagtttcaagcttaggagaccaaacctgatccttagacttcacaagcatttcataatgttttttca |
15021113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 17721750 - 17721807
Alignment:
| Q |
20 |
gagaggagtccaatgatcatcacattaagctacgaaaaactaaataaacggaattaaa |
77 |
Q |
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| T |
17721750 |
gagaggagcctaatgatcatcatattaagctacgaaaaactaaataagcggaactaaa |
17721807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 19022979 - 19023036
Alignment:
| Q |
20 |
gagaggagtccaatgatcatcacattaagctacgaaaaactaaataaacggaattaaa |
77 |
Q |
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| T |
19022979 |
gagaggagcctaatgatcatcatattaagctacgaaaaactaaataagcggaactaaa |
19023036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 49160825 - 49160750
Alignment:
| Q |
183 |
ttttccaaaataatttca-gcttaggagaccaactataatccatagatttcacaagcatttcataatgtttattca |
257 |
Q |
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| T |
49160825 |
ttttccaaaatagtttcaagcttaggagaccaactctgattcatagatttcacaagcatttcataatgtttattca |
49160750 |
T |
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