View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8307_low_14 (Length: 241)
Name: NF8307_low_14
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8307_low_14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 5773256 - 5773486
Alignment:
| Q |
10 |
acatcataagagaaacaaatctcctgagcaattcttgggaagtaggagaatagacttaattcggtcgtcacgattttgattatatacaatgagtgtccat |
109 |
Q |
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| T |
5773256 |
acatcataagagaaacaaatctcctgagcaattcttgggaagtaggagaatagacttaattcggtcgtcacgattttgattatatacaatgagtgtccat |
5773355 |
T |
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| Q |
110 |
ttccacttcttatactagtactgctaatagctcaaatttgaatataccttttcataataacatgaaatcttagcatggaagtatcagaagagagctcttt |
209 |
Q |
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| T |
5773356 |
ttccacttcttatactagtaccgctaatagctcaaatttgaatataccttttcataataacatgaaatc-tagcatggaagtatcagaagagagctcttt |
5773454 |
T |
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| Q |
210 |
acatatagaagattctttacattttaacaatt |
241 |
Q |
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| T |
5773455 |
acagatagaagattctttacattttaacaatt |
5773486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 5767216 - 5767261
Alignment:
| Q |
134 |
taatagctcaaatttgaatataccttttcataataacatgaaatct |
179 |
Q |
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| T |
5767216 |
taatagctcaaatttcaaaataccttttcataataacatgaaatct |
5767261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 5767069 - 5767191
Alignment:
| Q |
16 |
taagagaaacaaatctcctgagca---attcttgggaagtaggagaatagacttaattcggtcgtcacgattttgatta-------tatacaatgagtgt |
105 |
Q |
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| T |
5767069 |
taagaaaaaccaatcccctgagcagccattcttgggaagtaggagaataaacctaattcagtc---aagattttgattacaatatatacacaatgagtat |
5767165 |
T |
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| Q |
106 |
ccatttccacttcttatactagtact |
131 |
Q |
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| T |
5767166 |
ccatttgcacttcttatactagtact |
5767191 |
T |
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