View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8307_low_15 (Length: 238)

Name: NF8307_low_15
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8307_low_15
NF8307_low_15
[»] chr4 (17 HSPs)
chr4 (24-220)||(1148230-1148426)
chr4 (111-203)||(1171866-1171955)
chr4 (130-171)||(1164409-1164450)
chr4 (29-77)||(18513176-18513224)
chr4 (24-68)||(19312411-19312455)
chr4 (24-78)||(3947701-3947755)
chr4 (31-77)||(37203324-37203370)
chr4 (24-77)||(14465006-14465059)
chr4 (24-77)||(22234820-22234873)
chr4 (24-77)||(23292927-23292980)
chr4 (24-77)||(24613631-24613684)
chr4 (111-153)||(1181158-1181200)
chr4 (27-73)||(3712458-3712504)
chr4 (23-77)||(42640588-42640642)
chr4 (27-76)||(22440559-22440608)
chr4 (28-77)||(24343582-24343631)
chr4 (29-78)||(40965341-40965390)
[»] chr5 (3 HSPs)
chr5 (24-77)||(32766873-32766926)
chr5 (25-77)||(42893426-42893478)
chr5 (24-77)||(43564946-43564999)
[»] scaffold0003 (1 HSPs)
scaffold0003 (24-77)||(241670-241723)
[»] chr7 (10 HSPs)
chr7 (24-77)||(598273-598326)
chr7 (24-77)||(1433524-1433577)
chr7 (24-77)||(21880217-21880270)
chr7 (24-77)||(5409772-5409825)
chr7 (24-77)||(29763130-29763183)
chr7 (24-77)||(15680874-15680927)
chr7 (24-77)||(21864873-21864926)
chr7 (24-77)||(43027405-43027458)
chr7 (25-77)||(9778571-9778623)
chr7 (28-68)||(18215147-18215187)
[»] chr1 (11 HSPs)
chr1 (24-77)||(9828120-9828173)
chr1 (28-77)||(2218297-2218346)
chr1 (24-77)||(6427540-6427593)
chr1 (29-76)||(16297223-16297270)
chr1 (24-78)||(40258873-40258927)
chr1 (24-73)||(5898211-5898260)
chr1 (24-77)||(18556386-18556439)
chr1 (24-77)||(40917825-40917878)
chr1 (24-76)||(1486646-1486698)
chr1 (29-77)||(10233326-10233374)
chr1 (24-76)||(17778618-17778670)
[»] chr8 (9 HSPs)
chr8 (24-77)||(22652052-22652105)
chr8 (25-58)||(12570458-12570491)
chr8 (25-58)||(12570684-12570717)
chr8 (32-77)||(15816059-15816104)
chr8 (28-77)||(24413500-24413549)
chr8 (24-77)||(29447520-29447573)
chr8 (28-77)||(36450695-36450744)
chr8 (29-77)||(27213595-27213643)
chr8 (28-76)||(44067596-44067644)
[»] chr6 (8 HSPs)
chr6 (32-77)||(7378052-7378097)
chr6 (28-75)||(9025448-9025495)
chr6 (26-68)||(18803501-18803543)
chr6 (29-67)||(33340895-33340933)
chr6 (23-61)||(34172252-34172290)
chr6 (24-77)||(17435275-17435328)
chr6 (24-77)||(24645546-24645599)
chr6 (29-77)||(7248439-7248487)
[»] chr3 (10 HSPs)
chr3 (24-77)||(41961580-41961633)
chr3 (28-77)||(11610578-11610627)
chr3 (33-78)||(25211604-25211649)
chr3 (24-77)||(27505316-27505369)
chr3 (31-76)||(29508522-29508567)
chr3 (24-77)||(34185053-34185106)
chr3 (24-77)||(55401140-55401193)
chr3 (24-68)||(4987230-4987274)
chr3 (28-76)||(24204983-24205031)
chr3 (28-76)||(25775576-25775624)
[»] chr2 (6 HSPs)
chr2 (24-77)||(21782745-21782798)
chr2 (24-77)||(26769587-26769640)
chr2 (28-77)||(37419823-37419872)
chr2 (25-82)||(42511318-42511375)
chr2 (24-76)||(2438661-2438713)
chr2 (25-77)||(38117100-38117152)
[»] scaffold0053 (1 HSPs)
scaffold0053 (24-77)||(8863-8916)
[»] scaffold0020 (1 HSPs)
scaffold0020 (28-77)||(135264-135313)
[»] scaffold0652 (1 HSPs)
scaffold0652 (28-80)||(400-452)
[»] scaffold0044 (1 HSPs)
scaffold0044 (24-68)||(53256-53300)
[»] scaffold0019 (1 HSPs)
scaffold0019 (25-77)||(71802-71854)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 1148426 - 1148230
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataactttagacacattgtttcacttccaccgtggtctacattaatcct 123  Q
    |||||||||  |||||||| |||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  1148426 gacacgtgtttgacaccagaacacgtataatccgagaagtgtctgagcttcatagctttagacacattgtttcacttccactgtggtctacattaatcct 1148327  T
Q  124 cactttgtctttattgctactaaatactatatattttggccacaattagtatcatgttttcttgttgattagtttgtgtcgtctgtattctgtaaat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1148326 cactttgtctttattgctactaaatactatatattttggccacaattagtctcatgttttcttgttgattagtttgtgtcgtctgtattctgtaaat 1148230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 1171955 - 1171866
Alignment:
Q  111 ctacattaatcctcactttgtctttattgctactaaatactatatattttggccacaattagtatcatgttttcttgttgattagtttgtgtc 203  Q
    |||||||||||| | ||| ||||||||||||||||||||   ||||||||| || |||||| ||||||||| ||||||||||| |||||||||    
T  1171955 ctacattaatccactcttagtctttattgctactaaata---tatattttgaccgcaattaatatcatgttctcttgttgatttgtttgtgtc 1171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 1164450 - 1164409
Alignment:
Q  130 gtctttattgctactaaatactatatattttggccacaatta 171  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  1164450 gtctttattgctactaaatactatgtattttggccacaatta 1164409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 18513224 - 18513176
Alignment:
Q  29 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  18513224 gtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcata 18513176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 19312411 - 19312455
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccg 68  Q
    |||||||||||||||||  ||||||||||||||||||||||||||    
T  19312411 gacacgtgtccgacaccgagacacgtctaatctgagaagtgtccg 19312455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 3947755 - 3947701
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataa 78  Q
    ||||||||||||||||||||||||  |||||| ||| |||||||| |||||||||    
T  3947755 gacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcataa 3947701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 37203324 - 37203370
Alignment:
Q  31 gtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||||    
T  37203324 gtccgacaccgggacacgtctaatccgagaagtgtccgtgcttcata 37203370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 14465059 - 14465006
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||| ||||||  |||||||||||||||||| |||||||| ||||||||    
T  14465059 gacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcata 14465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 22234873 - 22234820
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||||||||||  |||||| ||||||||| || ||||||||    
T  22234873 gacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcata 22234820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 23292980 - 23292927
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| ||||||| |||||| ||| |||||||| ||||||||    
T  23292980 gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 23292927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 24613684 - 24613631
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||| |||||||||||||||||||||  || |||||||| ||||||||    
T  24613684 gacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcata 24613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 1181200 - 1181158
Alignment:
Q  111 ctacattaatcctcactttgtctttattgctactaaatactat 153  Q
    |||||||||||| | ||| ||||||||||||||||||||||||    
T  1181200 ctacattaatccactcttagtctttattgctactaaatactat 1181158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 3712504 - 3712458
Alignment:
Q  27 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagctt 73  Q
    |||||||||||||| ||||||| |||||||||| |||||||| ||||    
T  3712504 acgtgtccgacaccgggacacggctaatctgaggagtgtccgtgctt 3712458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 42640588 - 42640642
Alignment:
Q  23 ggacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||| |||||||||||| |||||| ||| ||| |||| ||||||||    
T  42640588 ggacacgtgtccggcaccaggacacgcctaatccgaggagtttccgtgcttcata 42640642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 22440608 - 22440559
Alignment:
Q  27 acgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    ||||||||||||| |||||||| |||||| ||| |||||||| |||||||    
T  22440608 acgtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 24343582 - 24343631
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||| ||||||| ||| |||||| |||||||| ||||||||    
T  24343582 cgtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcata 24343631  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 40965341 - 40965390
Alignment:
Q  29 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataa 78  Q
    ||||||||||||| |||||| |||||||||| |||||| | |||||||||    
T  40965341 gtgtccgacaccaagacacgcctaatctgaggagtgtcggtgcttcataa 40965390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 32766926 - 32766873
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  32766926 gacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcata 32766873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 42893426 - 42893478
Alignment:
Q  25 acacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||||||||||| ||||| |||| |||||||  ||||||||    
T  42893426 acacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcata 42893478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 43564946 - 43564999
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||| ||||||||| || ||||||| |||||| |||||||||||| ||||||||    
T  43564946 gacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcata 43564999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 241670 - 241723
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  241670 gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 241723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 598273 - 598326
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  598273 gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 598326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 1433524 - 1433577
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  1433524 gacatgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcata 1433577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 21880217 - 21880270
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  21880217 gacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcata 21880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 5409825 - 5409772
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| ||||||| |||||| ||| |||||||| ||||||||    
T  5409825 gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 5409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 29763183 - 29763130
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||| ||||||||| |||||| ||| |||||||| ||||||||    
T  29763183 gacacgtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcata 29763130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 15680874 - 15680927
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||||  ||||||||||||  ||| |||||||| ||||||||    
T  15680874 gacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcata 15680927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 21864873 - 21864926
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| |||||||||||||  ||| |||||| | ||||||||    
T  21864873 gacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcata 21864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 43027458 - 43027405
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| ||||||| |||||| ||  |||||||| ||||||||    
T  43027458 gacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcata 43027405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 9778571 - 9778623
Alignment:
Q  25 acacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||| ||||||| ||||||  || |||||||| ||||||||    
T  9778571 acacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcata 9778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 18215187 - 18215147
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccg 68  Q
    ||||||||||||| ||||||| |||||||||| ||||||||    
T  18215187 cgtgtccgacaccgggacacgcctaatctgaggagtgtccg 18215147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 9828120 - 9828173
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||    
T  9828120 gacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcata 9828173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 2218297 - 2218346
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||| |||||||| |||||||||| |||||||| ||||||||    
T  2218297 cgtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcata 2218346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 6427540 - 6427593
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| ||||||| |||||||||  |||||||| ||||||||    
T  6427540 gacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcata 6427593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 16297270 - 16297223
Alignment:
Q  29 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    |||||||||||||||||||| |||||| ||| |||||||| |||||||    
T  16297270 gtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 40258927 - 40258873
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataa 78  Q
    ||||| ||||||||||||||||||| |||||| ||| |||||||  |||||||||    
T  40258927 gacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcataa 40258873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 5898260 - 5898211
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagctt 73  Q
    ||||||||||| ||||| |||||||||||||| ||| |||||||| ||||    
T  5898260 gacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctt 5898211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 18556439 - 18556386
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||| ||||||||  ||||||| |||||| |||||||||||| ||||||||    
T  18556439 gacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcata 18556386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 40917825 - 40917878
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| ||||||| |||||| ||| | |||||| ||||||||    
T  40917825 gacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcata 40917878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 1486698 - 1486646
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    ||||||||||||||||| ||||||| |||||| ||| |||||| | |||||||    
T  1486698 gacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 10233326 - 10233374
Alignment:
Q  29 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||||||  |||||| ||| |||||||| ||||||||    
T  10233326 gtgtccgacaccaggacacacctaatcagaggagtgtccgtgcttcata 10233374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 17778618 - 17778670
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    ||||||||||||||||| ||||| | |||||| ||||||||| || |||||||    
T  17778618 gacacgtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 22652052 - 22652105
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||| |||||||||||| |||||||||||||| ||| |||||||| ||||||||    
T  22652052 gacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcata 22652105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 12570491 - 12570458
Alignment:
Q  25 acacgtgtccgacaccaggacacgtctaatctga 58  Q
    |||||||||||||||||||||||| |||||||||    
T  12570491 acacgtgtccgacaccaggacacgcctaatctga 12570458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 12570717 - 12570684
Alignment:
Q  25 acacgtgtccgacaccaggacacgtctaatctga 58  Q
    |||||||||||||||||||||||| |||||||||    
T  12570717 acacgtgtccgacaccaggacacgcctaatctga 12570684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 15816104 - 15816059
Alignment:
Q  32 tccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  15816104 tccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 15816059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 24413549 - 24413500
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||| ||| | |||||||||||||| |||||||||||| ||||||||    
T  24413549 cgtgtccaacagcgggacacgtctaatccgagaagtgtccgtgcttcata 24413500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 29447520 - 29447573
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||| |||||||||||| ||||| |||||||| ||| |||||||| ||||||||    
T  29447520 gacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcata 29447573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 36450744 - 36450695
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||||||| |||||| ||| |||||| | ||||||||    
T  36450744 cgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcata 36450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 27213595 - 27213643
Alignment:
Q  29 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||| |||||| ||||||| |||||| |||||||||||| ||||||||    
T  27213595 gtgtcggacaccgggacacggctaatccgagaagtgtccgtgcttcata 27213643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 44067596 - 44067644
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    ||||||||||||||||||||| |||||  ||| |||||||| |||||||    
T  44067596 cgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 7378052 - 7378097
Alignment:
Q  32 tccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  7378052 tccgacaccgggacacggctaatctgagaagtgtccgtgcttcata 7378097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 9025495 - 9025448
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttca 75  Q
    ||||||||||||| ||||||| |||||| |||||||||||| ||||||    
T  9025495 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 18803543 - 18803501
Alignment:
Q  26 cacgtgtccgacaccaggacacgtctaatctgagaagtgtccg 68  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||    
T  18803543 cacgtatccgacatcaggacacgtctaatccgagaagtgtccg 18803501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 33340933 - 33340895
Alignment:
Q  29 gtgtccgacaccaggacacgtctaatctgagaagtgtcc 67  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  33340933 gtgtccgacactgggacacgtctaatctgagaagtgtcc 33340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 34172252 - 34172290
Alignment:
Q  23 ggacacgtgtccgacaccaggacacgtctaatctgagaa 61  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  34172252 ggacacgtgtccgacaccaggacacgcctaatccgagaa 34172290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 17435275 - 17435328
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||| ||||||  ||||||||||||||||| |||||||||  |||||||    
T  17435275 gacacgtgttcgacactgggacacgtctaatctgaaaagtgtccgtacttcata 17435328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 24645546 - 24645599
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||||| ||||||||||||| ||  |||||| | ||||||||    
T  24645546 gacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcata 24645599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 7248439 - 7248487
Alignment:
Q  29 gtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||| ||||||||| |||| ||| |||||||| ||||||||    
T  7248439 gtgtccgacaccgggacacgtcaaatccgaggagtgtccgtgcttcata 7248487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 41961633 - 41961580
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||  ||||||| |||||| |||||||||||| ||||||||    
T  41961633 gacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcata 41961580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 11610578 - 11610627
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||| | ||||||| |||||||||| |||||||| ||||||||    
T  11610578 cgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcata 11610627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 25211604 - 25211649
Alignment:
Q  33 ccgacaccaggacacgtctaatctgagaagtgtccgagcttcataa 78  Q
    |||||||||||||||| ||||||||||||||||  | |||||||||    
T  25211604 ccgacaccaggacacgcctaatctgagaagtgtttgtgcttcataa 25211649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 27505316 - 27505369
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||| ||||| | |||||| ||| |||||||| ||||||||    
T  27505316 gacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcata 27505369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 29508522 - 29508567
Alignment:
Q  31 gtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    |||||||||| ||||||||||||||  ||||||||||| |||||||    
T  29508522 gtccgacaccgggacacgtctaatccaagaagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 34185106 - 34185053
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||| |||||||||||| ||||||| |||||| ||| |||||||| ||||||||    
T  34185106 gacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 34185053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 55401140 - 55401193
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||||  |||||| |||||| ||| |||||||| ||||||||    
T  55401140 gacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcata 55401193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 4987274 - 4987230
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccg 68  Q
    ||||||||||||||||| ||||||| |||||| ||| ||||||||    
T  4987274 gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccg 4987230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 24205031 - 24204983
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    ||||||||||||||||||||| |||||  ||| |||||||| |||||||    
T  24205031 cgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 25775576 - 25775624
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    ||||||||||||||||||||| |||||| ||| ||||| || |||||||    
T  25775576 cgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 21782798 - 21782745
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||| ||||| |||||||||||||||| | |||||||| ||||||||    
T  21782798 gacacgtgtccaacaccgggacacgtctaatctgtggagtgtccgtgcttcata 21782745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 26769587 - 26769640
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||  ||||||| |||||| ||| |||||||| ||||||||    
T  26769587 gacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcata 26769640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 37419823 - 37419872
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||| ||||||| |||||| ||| |||||||| ||||||||    
T  37419823 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 42511375 - 42511318
Alignment:
Q  25 acacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataacttt 82  Q
    |||||||||||||||  ||||||| |||||| ||| |||||||| |||||||| ||||    
T  42511375 acacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatagcttt 42511318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 2438713 - 2438661
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcat 76  Q
    ||||| ||||||||||| ||||||| |||||| ||| |||||||| |||||||    
T  2438713 gacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 38117152 - 38117100
Alignment:
Q  25 acacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||| ||||||| |||||| |||  ||||||| ||||||||    
T  38117152 acacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcata 38117100  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 8863 - 8916
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||||  |||||| |||||||||| ||| |||| ||||||||    
T  8863 gacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcata 8916  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 135313 - 135264
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    ||||||||||||||||||||| ||||||||||  |||| || ||||||||    
T  135313 cgtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcata 135264  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 452 - 400
Alignment:
Q  28 cgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcataact 80  Q
    ||||||||||||| ||||||  |||||| ||| |||||||| |||||||||||    
T  452 cgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataact 400  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 53256 - 53300
Alignment:
Q  24 gacacgtgtccgacaccaggacacgtctaatctgagaagtgtccg 68  Q
    ||||||||||||||||| |||||||| |||||  |||||||||||    
T  53256 gacacgtgtccgacaccgggacacgtttaatccaagaagtgtccg 53300  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 71802 - 71854
Alignment:
Q  25 acacgtgtccgacaccaggacacgtctaatctgagaagtgtccgagcttcata 77  Q
    |||||||||||||||| ||||||| |||||| ||| |||||| | ||||||||    
T  71802 acacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcata 71854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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