View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8307_low_4 (Length: 418)
Name: NF8307_low_4
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8307_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 43181247 - 43181628
Alignment:
| Q |
18 |
ttaactaacatggtgagtattttgtagatatcaaaaacatgttttacgcaataacgcaaataaaaatagtatgtgattacttaatcaacaagtaagcact |
117 |
Q |
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| T |
43181247 |
ttaactaacatggtgagtattttgtagatatcaaaaacatgttttacgcaa--------atataaatagtatgtgattacttaatcaacaagtaagcact |
43181338 |
T |
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| Q |
118 |
taccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaatcgaagaaggaacaccctccacattctcatacatgaacggccc |
217 |
Q |
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| T |
43181339 |
taccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaatcgaagaaggaacaccctccacattctcatacatgaacggccc |
43181438 |
T |
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| Q |
218 |
attgtcatgtgacatgccacggaacattctatggtgattaaccttagaatcagcatagatgctcctaaattcgtaattagtcatgtcagcaaacttattc |
317 |
Q |
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| T |
43181439 |
attgtcatgtgacatgccacggaacattctatggtgattaaccttagaatcagcatagatgctcctaaattcgtaattagtcatgtcagcaaacttattc |
43181538 |
T |
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| Q |
318 |
aacttaagcttataaggtttatctaatttattggtattatgaacatgcataacattggctttgaacacgttaaaacgattattcttctca |
407 |
Q |
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| T |
43181539 |
aacttaagcttataaggtttatctaatttattggtattatgaacatgcataacattggctttgaacacgttaaaacgattattcttctca |
43181628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 391
Target Start/End: Original strand, 34312492 - 34312767
Alignment:
| Q |
116 |
cttaccgcattggccttgatcctttacaccagtgacagcacctatcttcctccaatcaatcgaagaaggaacaccctccacattctcatacatgaacggc |
215 |
Q |
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| T |
34312492 |
cttaccacattggccttgatccttgacatcagtgacagcacctttctttctccaatcaacagaagcaggagctttggtaaaattctcatacatgaatgtt |
34312591 |
T |
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| Q |
216 |
ccattgtcatgtgacatgccacggaacattctatggtgattaaccttagaatcagcatagatgctcctaaattcgtaattagtcatgtcagcaaacttat |
315 |
Q |
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| T |
34312592 |
ccacttacacgtggcgtgcctcggaacattctgtggtgattaacctttgatccagcataggtagtcttaaattcatggttggtcatgtcggcaaacttgt |
34312691 |
T |
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| Q |
316 |
tcaacttaagcttataaggtttatctaatttattggtattatgaacatgcataacattggctttgaacacgttaaa |
391 |
Q |
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| T |
34312692 |
taagtttcaacttgtaaggcttatccattttgttagtgttgtggacatgcatcacatttgatttgaacacgttaaa |
34312767 |
T |
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