View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8307_low_6 (Length: 353)
Name: NF8307_low_6
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8307_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 17953373 - 17953033
Alignment:
| Q |
1 |
actctggagtacatcgtatgaagttgtagggatgtcagaaaaaccgaactgaactcaaataacagttttgatgaactgaaccgaactattttaagtttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17953373 |
actctggagtacatcgtatgaagttgtagggatgtcagaaaaaccgaactgaactcaaataacagttttgatgaactgaaccgaactattttaagtttag |
17953274 |
T |
|
| Q |
101 |
aaccaaatgaaagtgattttgaggttcaatgcattgctgaattggaatttaagaacctaactgaagcaatgtgtccagcatatgtatctctaagtttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17953273 |
aaccaaatgaaagtgattttgaggttcaatgcattgctgaattggaatttaagaacctaactgaagcaatgtgtccagcatatgtatctctaagttgaat |
17953174 |
T |
|
| Q |
201 |
ttacaggactacatagtctttcttttatttatttttcggcttgacttccttctatgatgttccatcaatgctaaaaccccgactaattgaagaaaaagtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17953173 |
ttacaggactacatagtctttcttttatttatttttcggcttgacttccttctatgatgttccatcaatgctaaaaccccgactaattgaagaaaaagtc |
17953074 |
T |
|
| Q |
301 |
aaaaactaccccgcagccttaaaaaatactatgttcttctc |
341 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17953073 |
aaaaactaccccgtagccttaaaaaatactatgttcttctc |
17953033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 17721900 - 17722003
Alignment:
| Q |
59 |
ataacagttttgatgaactgaaccgaactattttaagtttagaa---ccaaatgaaagtgattttgaggttcaatgcattgctgaattggaatttaagaa |
155 |
Q |
| |
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|||||||||| |||||||| |||| | |||||||||||||||| ||||| ||| |||||||||| || ||||||||||||||||| |||||||||| |
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| T |
17721900 |
ataacagtttcgatgaactcgaccggaatattttaagtttagaagaaccaaactaaattgattttgagatttaatgcattgctgaattgaaatttaagaa |
17721999 |
T |
|
| Q |
156 |
ccta |
159 |
Q |
| |
|
|||| |
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|
| T |
17722000 |
ccta |
17722003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 19023129 - 19023232
Alignment:
| Q |
59 |
ataacagttttgatgaactgaaccgaactattttaagtttagaa---ccaaatgaaagtgattttgaggttcaatgcattgctgaattggaatttaagaa |
155 |
Q |
| |
|
|||||||||| |||||||| |||| | |||||||||||||||| ||||| ||| |||||||||| || ||||||||||||||||| |||||||||| |
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| T |
19023129 |
ataacagtttcgatgaactcgaccggaatattttaagtttagaagaaccaaactaaattgattttgagatttaatgcattgctgaattgaaatttaagaa |
19023228 |
T |
|
| Q |
156 |
ccta |
159 |
Q |
| |
|
|||| |
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|
| T |
19023229 |
ccta |
19023232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 17722048 - 17722088
Alignment:
| Q |
221 |
tcttttatttatttttcggcttgacttccttctatgatgtt |
261 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
17722048 |
tcttttatttacctttcggtttgacttccttctatgatgtt |
17722088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 19023277 - 19023317
Alignment:
| Q |
221 |
tcttttatttatttttcggcttgacttccttctatgatgtt |
261 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
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| T |
19023277 |
tcttttatttacctttcggtttgacttccttctatgatgtt |
19023317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 33608225 - 33608110
Alignment:
| Q |
47 |
aactgaactcaaataacagttttgatgaactgaaccgaactattttaagttta---gaaccaaatgaaagtgattttgaggttcaatgcattgctgaatt |
143 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| ||||||||| ||| ||||||| ||||||| |||||||||||| | |
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| T |
33608225 |
aactgaactcaaataacaattttgatgaactgaaccaaactagtttaaatttacaagaaccaaattaaactgattttcaggttcagtgcattgctgaact |
33608126 |
T |
|
| Q |
144 |
ggaatttaagaaccta |
159 |
Q |
| |
|
|||||||||||||||| |
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| T |
33608125 |
ggaatttaagaaccta |
33608110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 15342903 - 15342844
Alignment:
| Q |
221 |
tcttttatttattttt--cggcttgacttccttctatgatgttccatcaatgctaaaaccc |
279 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||||||| | |||||||||| |
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| T |
15342903 |
tcttttatttatttttttcagcttgacttccttctatgatgttccatcga-gctaaaaccc |
15342844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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