View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8307_low_8 (Length: 352)
Name: NF8307_low_8
Description: NF8307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8307_low_8 |
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| [»] scaffold0693 (2 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 162 - 350
Target Start/End: Original strand, 3931 - 4128
Alignment:
| Q |
162 |
cgtgtgcaagcaagagggataggtacacatagctggttgcatttattgtcggttcctaatattgtttgaatttgtctcttctcctccnnnnnnnnnnnnn |
261 |
Q |
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| T |
3931 |
cgtgtgcaagcaagagggataggtacacatagctagttgcatttattgtcggttcctaatattgtttgaatttgtctcttctcctccttttttatttttt |
4030 |
T |
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| Q |
262 |
naatttgtacaaaagtattatttgaacattc---------aatgcaagttttgtttcctctgttgaataaaaacaagagaactgctcctctccttaga |
350 |
Q |
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| T |
4031 |
taatttgtacaaaagtattatttgaatattcaatttaattaatgcaagttttgtttcctctgttgaataaaaacaagagaactgctcctctccttaga |
4128 |
T |
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Target: scaffold0693; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 3724 - 3829
Alignment:
| Q |
18 |
atattatgctgctatatagcatccattttaatggctatgatatcaactatctcagcttacaaagtattaagaatgtactctccaaagaggttcctgcgtt |
117 |
Q |
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| T |
3724 |
atattatgctgctatatagcatccattttaatggctatgatatcaactatctcagcttacaaagtattaagaatgtactctccaaagaggttcctgcgtt |
3823 |
T |
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| Q |
118 |
tgaagg |
123 |
Q |
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| T |
3824 |
tgaagg |
3829 |
T |
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