View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8308_high_4 (Length: 282)
Name: NF8308_high_4
Description: NF8308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8308_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 2602973 - 2602722
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
2602973 |
aattcccccgaggaatccacatgaagaagtcagtataggaacggaattcactggcattattgatggaataattcctggtggatacttgctttcaattaca |
2602874 |
T |
|
| Q |
119 |
aaaggaaacggtgttacgttgcgtttgcggggttccatgttgacctcagatcaagcttcactatttcaaggcgatgttaatatgaatgtccctttggtac |
218 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2602873 |
aaaggaaatggtgtttctttgcgtttgcggggttccatgttgacctctgatcaagcttcactatttcaaggcgatgttaatatgaatgtccctttggtac |
2602774 |
T |
|
| Q |
219 |
caacaaatgtcaatcttcgaaactcagaagcatgtattaatctgaacaccaa |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
2602773 |
caacaaatgtcaatcttcgaaactcagaagcatgtatcaatttgaacaccaa |
2602722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 2616490 - 2616244
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattaca |
118 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||| ||| |||||||| |||||| | |
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| T |
2616490 |
aattctcccgacgaatccacatgaagaagtcagtgtaggaa-----ttcactggtgttattgatggaataattcctgttggatacttgctaacaattaaa |
2616396 |
T |
|
| Q |
119 |
aaaggaaacggtgttacgttgcgtttgcggggttccatgttgacctcagatcaagcttcactatttcaaggcgatgttaatatgaatgtccctttggtac |
218 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| ||||||||||||||||| |||||| |||||||| | |||| ||||||||||||||||||| |||||||| |
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|
| T |
2616395 |
aaagaaaatggtgttactttgcgtttgcgaggttccatgttgacctctgatcaaccttcactaactgaaggtgatgttaatatgaatgtccatttggtac |
2616296 |
T |
|
| Q |
219 |
caacaaatgtcaatcttcgaaactcagaagcatgtattaatctgaacaccaa |
270 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
2616295 |
cagcaaatgtcaatctttgaaactcagaagcatgtatcaatctgaacaccaa |
2616244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 10304137 - 10304259
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattaca |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| |||||| | ||||||| || ||||| |||||||||||| ||||||| ||||| || |||||| | |
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|
| T |
10304137 |
aattcccccgaggaatccacgtgaagaaatcaggttaggaatgaaattcactggtgttatcgatggaataattcctggtggatactttctcacaattaga |
10304236 |
T |
|
| Q |
119 |
aaaggaaacggtgttacgttgcg |
141 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
10304237 |
aaaggaaatggtgttactttgcg |
10304259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 2594016 - 2594139
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatgg-aataatttctggtgggtacttgctttcaattac |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||| ||||||||| || ||||| ||||| ||||||||||||||| ||||| || |||||| |
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|
| T |
2594016 |
aattcccccgaggaatccacgtgaagaaatcacgctaggaatggaattcactggtgttatcgatggaaataatttctggtggatactttctcacaattag |
2594115 |
T |
|
| Q |
118 |
aaaaggaaacggtgttacgttgcg |
141 |
Q |
| |
|
||||||||| |||||||| ||||| |
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|
| T |
2594116 |
aaaaggaaatggtgttactttgcg |
2594139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 2593790 - 2593668
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattaca |
118 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||| |||||| |||| |||| | ||||| ||| |||||||| ||||||| |||||||| |||||||| |
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|
| T |
2593790 |
aattcccctcaggaatccacgtgaagaaatcaggctaggaatggaaatcacttgtgttatcgattgaataattcctggtggatacttgctcacaattaca |
2593691 |
T |
|
| Q |
119 |
aaaggaaacggtgttacgttgcg |
141 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
2593690 |
aaaggaaatggtgttactttgcg |
2593668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 27170865 - 27171068
Alignment:
| Q |
23 |
cccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattacaaaag |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| |||| |||| || ||||| ||||||||| |||||||||| |||||||| ||||| | | |
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|
| T |
27170865 |
cccccgaggaatccacatgaagaaatcagggtaggagaggaaatcactggtgttatcgatggaatattttctggtggatacttgctcacaattcgactgg |
27170964 |
T |
|
| Q |
123 |
gaaacggtgttacgttgcgtttgcggggttccatgttgacctcagatcaagcttcactatttcaaggcgatgttaatatgaatgtccctttggtaccaac |
222 |
Q |
| |
|
|||| |||||||| |||| |||||||||||| ||||| ||||| ||||| | ||||||| ||||||||| | ||||| |||||||||||||| |
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|
| T |
27170965 |
gaaatggtgttac------attgcagggttccatgttaacctctaatcaaccttcagtgattcaaggtgatgttaatgtaaatgttcctttggtaccaac |
27171058 |
T |
|
| Q |
223 |
aaatgtcaat |
232 |
Q |
| |
|
||||||||| |
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|
| T |
27171059 |
caatgtcaat |
27171068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 27170449 - 27170239
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattaca |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||||||| ||||||||| | ||||| ||||||||| || | |||| |||||||| ||||| | |
|
|
| T |
27170449 |
aattcccccgaagaatccacatgaagaaatcgaggtaggaaaggaattcactagtgttatcgatggaatatttcatagtggatacttgctcacaattcga |
27170350 |
T |
|
| Q |
119 |
aaaggaaacggtgttacgttgcgtttgcggggttccatgttgacctcagatcaagcttcactatttcaaggcgatgttaatatgaatgtccctttggtac |
218 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||| || || ||||||| ||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
27170349 |
gtgggaaatggtgttac------tttgcggggttccatgttaacctcttataaaccttcactgattcaaggtgatgttaatgtgaatgtttctttggtac |
27170256 |
T |
|
| Q |
219 |
caacaaatgtcaatctt |
235 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
27170255 |
caaccaatgtcaatctt |
27170239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 22192984 - 22193100
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattaca |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||| ||||||||| || |||| |||||||||||| ||| ||| |||||||| |||| | | |
|
|
| T |
22192984 |
aattcccccgaggaatccacgtgaagaaatcaagataggaatggaattcactggtattatcgatggaataattcctgctggatacttgctcacaatgaaa |
22193083 |
T |
|
| Q |
119 |
aaaggaaacggtgttac |
135 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
22193084 |
aaaggaaatggtgttac |
22193100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 22230581 - 22230697
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattaca |
118 |
Q |
| |
|
||||||||| || ||||||| |||| || |||| |||||| ||||||||| | ||||| |||||||||||| ||||||| |||||||| |||||| | |
|
|
| T |
22230581 |
aattcccccaagcaatccacgtgaaaaaatcaggctaggaatggaattcactagtgttatcgatggaataattcctggtggatacttgctcacaattaga |
22230680 |
T |
|
| Q |
119 |
aaaggaaacggtgttac |
135 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
22230681 |
aaaggaaatggtgttac |
22230697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 22230355 - 22230234
Alignment:
| Q |
19 |
aattcccccgaggaatccacatgaagaagtcagtgtaggaacggaattcaccggcgttattgatggaataatttctggtgggtacttgctttcaattaca |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| |||||| | || |||| | ||||| ||| |||||||| ||||||| |||||||| |||||| | |
|
|
| T |
22230355 |
aattcccccgaggaatccacttgaagaaatcaggctaggaatgaaaatcacttgtgttatcgattgaataattcctggtggatacttgctcacaattaga |
22230256 |
T |
|
| Q |
119 |
aaaggaaacggtgttacgttgc |
140 |
Q |
| |
|
|||||||| ||| |||| |||| |
|
|
| T |
22230255 |
aaaggaaatggtattactttgc |
22230234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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