View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8308_low_3 (Length: 387)
Name: NF8308_low_3
Description: NF8308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8308_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 49636282 - 49635926
Alignment:
| Q |
16 |
atgaatgtcgccaaacgcatttgcttctagaagaatatgttgaagcaagatcttttactccttttacacatgtactcaatgaagttaatgggatctacta |
115 |
Q |
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| T |
49636282 |
atgaatgtcgccaaacgcatttgtttctagaagaatatgttgaagcaagatcttttactccttttacacatgtactcaatgaagttaatgggatctacta |
49636183 |
T |
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| Q |
116 |
ccacatgtaagtaagtttgggataatgtattcaaaaatgaacttcttaacaagtgcacagaatattctacataatcaaagcaccgaggatatcaaaggta |
215 |
Q |
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| T |
49636182 |
ccacatgtaagtaagtttgggataacatattcaaaaatgaacttcttaacaagtgcacaaaatattccacataatcaaagcaccgaggatatcaaaggta |
49636083 |
T |
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| Q |
216 |
gtgtaaaccatatgccattaagagatgaagactctcacgtccccttcttcacatatcccactcccccgatcacaatcatcccaaaactcacatggagaag |
315 |
Q |
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| T |
49636082 |
gtgtaaaccatatgccattaagagatgaagactctcacgtccccttcttcacatatcccactcccccgatcacaatcatcccaaaactcacatggagaag |
49635983 |
T |
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| Q |
316 |
ctagagtttgagcttcgatcacaatcggtcctttttgcaacaataataagtggtatt |
372 |
Q |
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| T |
49635982 |
ctagagtttgagcttcgatcacaatcggtcctttttgcaacaataataagtggtatt |
49635926 |
T |
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