View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8309_low_1 (Length: 377)
Name: NF8309_low_1
Description: NF8309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8309_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 54025908 - 54026211
Alignment:
| Q |
20 |
taatattctaagacacttaaagtttttattttattttaaggaagacacttaaagttaaaagtattaattacgagtatatttgaaggnnnnnnnnn-tcta |
118 |
Q |
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| T |
54025908 |
taatattctaagacacttaaagtttttttttt----taaggaagacacttaaaattaaaagtattaattacgagtatatttgaaggaaaaaaaaaatcta |
54026003 |
T |
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| Q |
119 |
ataatttgaacttgagttgttctatttgaaactgatttttgtcaaacttagaagttgtcaaacctcaaacatgttatgtaaccnnnnnnnnncctcaaca |
218 |
Q |
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| T |
54026004 |
ataatttgaacttgagttgttctatttggaactgatttttgtcaaacttaaaagttgtcaaacctcaaaaatgttatgtaaccaaaaaaaaacctcaaca |
54026103 |
T |
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| Q |
219 |
tgttagcggtgctcttaatgaataaccagaatatatcatcatgaacttcaatcttttggtagagataatacataatatatataaagttggagttcaaacc |
318 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54026104 |
tgttagtggtgctcttaatgaataaccagaatatatcatcatgaacttaaatcttttggtagagataatacataatatatataaagttggggttcaaacc |
54026203 |
T |
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| Q |
319 |
tcaaccac |
326 |
Q |
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|||||||| |
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| T |
54026204 |
tcaaccac |
54026211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 29228745 - 29228797
Alignment:
| Q |
274 |
ttggtagagataatacataatatatataaagttggagttcaaacctcaaccac |
326 |
Q |
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| T |
29228745 |
ttggtagggacaatccataatatatgtaaagtttgggttcaaacctcaaccac |
29228797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 41113191 - 41113219
Alignment:
| Q |
274 |
ttggtagagataatacataatatatataa |
302 |
Q |
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| T |
41113191 |
ttggtagagataatacataatatatataa |
41113219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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