View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8309_low_7 (Length: 203)
Name: NF8309_low_7
Description: NF8309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8309_low_7 |
 | |
|
| [»] scaffold0248 (1 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0081 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0248 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 16280 - 16085
Alignment:
| Q |
8 |
tattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagt |
107 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16280 |
tattattttcttcacaggtgtgttctttacatggcaatgtaggtcctatttataggatacaaaagttgtaacttacaattacatgaagagccatgagagt |
16181 |
T |
|
| Q |
108 |
aaatatcaatatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16180 |
aaatatcaatatgaataaataaagtcatttagtcatagtagttaaagaatatagaaggtatagagacaatgtacatccacatcatattttcattta |
16085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 28663655 - 28663836
Alignment:
| Q |
22 |
caagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaatatga |
121 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| || |
|
|
| T |
28663655 |
caagtgtgttctttacatgacaatgtagatcctatttataggatacaaaagttgtaacttataattacatgaagagccatgagactaaatatcaatagga |
28663754 |
T |
|
| Q |
122 |
ataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
||||||||||||||||| ||| | | ||||| ||||||||||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
28663755 |
ataaataaagtcatttagtcacaatagttaaggaatatagaaggtctggggacaatggacatccaaatcatattttcattta |
28663836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 19699538 - 19699352
Alignment:
| Q |
21 |
acaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagag----ccatgagagtaaatatcaa |
116 |
Q |
| |
|
||||||||||| |||||||| ||||||| || ||| ||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
19699538 |
acaagtgtgttctttacatgacaatgtatgtcatatttataggatacaaaagttgtaacttacagttacatgaagagtcagccatgagactaaatatcaa |
19699439 |
T |
|
| Q |
117 |
tatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
|| |||||||||||| |||||||||||||| ||||| | ||||| ||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
19699438 |
taggaataaataaaggcatttaatcatagtagttaagggatatataaggtctagggacaatggtcatccacatcatatttgcattta |
19699352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 17935524 - 17935469
Alignment:
| Q |
148 |
gttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
17935524 |
gttaaggaatatagaaggtctagaaacaatggacatccgcatcatattttcattta |
17935469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 24228304 - 24228356
Alignment:
| Q |
17 |
cttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaa |
69 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
24228304 |
cttcacaagtgtgtactttacattacaatatagatcctatttataggatacaa |
24228356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 26023575 - 26023381
Alignment:
| Q |
8 |
tattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagt |
107 |
Q |
| |
|
||||||||||||| || || ||| ||| ||||| |||||||| | |||| ||||||||||||||| ||||||||||||||| |||||||||||||||| | |
|
|
| T |
26023575 |
tattattctcttctcatgtatgtcttt-acatgacaatgtaggttctatttataggatacaaaagttgtaacttacaattatatgaagagccatgagact |
26023477 |
T |
|
| Q |
108 |
aaatatcaatatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
26023476 |
aaatatcaataggaataaataaagtcatttagtcatagtagttaaggaatatagaaggtctagagacaatggacatccacatcatattttcattta |
26023381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 26028809 - 26028698
Alignment:
| Q |
92 |
gaagagccatgagagtaaatatcaatatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatca |
191 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26028809 |
gaagagccatgagactaaatatcaataggaataaataaagtcatttagtcataatagttaaggaatatagaaggtctagggacaatggacatccacatca |
26028710 |
T |
|
| Q |
192 |
tattttcattta |
203 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26028709 |
tattttcattta |
26028698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 18188308 - 18188359
Alignment:
| Q |
148 |
gttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
18188308 |
gttaaggaatatagaaggtctagggacaatg----tccccatcatattttcattta |
18188359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 11312239 - 11312057
Alignment:
| Q |
22 |
caagtgtgttttttacatggcaa-tgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaatatg |
120 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
11312239 |
caagtgtgttctttacatgacaaatgtagatcctatttataggatacaaaagttgtaccttacaattacatgaagagccatgagactaaatgtcaatagg |
11312140 |
T |
|
| Q |
121 |
aataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
|||||||||||| ||| | ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11312139 |
aataaataaagttattaagtcatagtagttaagggatatagaaggtctagggacaatgtacatccacatcatattttcattta |
11312057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 7395724 - 7395884
Alignment:
| Q |
33 |
tttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaatatgaataaataaagt |
132 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||| || ||| ||||||||||||||| |||||| |||||||||||| |||| |
|
|
| T |
7395724 |
tttacatgacaatgtaggtcctatttataggatacaaaagttgcgtcttctaattacatgaagagctatgagactaaatatcaata----------aagt |
7395813 |
T |
|
| Q |
133 |
catttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7395814 |
catttaatcatagtagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcattta |
7395884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 7384839 - 7384988
Alignment:
| Q |
33 |
tttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaatatgaataaataaagt |
132 |
Q |
| |
|
|||| |||| ||||||| |||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
7384839 |
tttatatggtaatgtaggtcctatttatagaatacaaaagttgtaactttcaattacatgaagagccatgagactaaatatc----------aataaagt |
7384928 |
T |
|
| Q |
133 |
catttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcat |
192 |
Q |
| |
|
|||||| ||||| | ||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7384929 |
catttagtcatattagttaagaaatatagaaggtctagggacaatggacatccacatcat |
7384988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 23453671 - 23453561
Alignment:
| Q |
26 |
tgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaatatgaataa |
125 |
Q |
| |
|
|||||| |||| |||||||| || |||||| ||||||| | |||| |||||||||||| |||||||| || ||| || ||||| |||||| ||| | |
|
|
| T |
23453671 |
tgtgttatttatatggcaatatatgtcctatttataggacagaaaatttgtaacttacaagtacatgaatagtcataaggctaaatgtcaataacaatga |
23453572 |
T |
|
| Q |
126 |
ataaagtcatt |
136 |
Q |
| |
|
||||||||||| |
|
|
| T |
23453571 |
ataaagtcatt |
23453561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 23599966 - 23600164
Alignment:
| Q |
8 |
tattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagt |
107 |
Q |
| |
|
|||||||||||||| |||||| | ||||||| | ||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
23599966 |
tattattctcttcataagtgtatactttacatagtaatgtaggtcctatttataggatataaaagttgtaacttacaattacatgaagagtcatgagagt |
23600065 |
T |
|
| Q |
108 |
a---aatatcaatatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
| |||||||||| ||||||| ||||||||||| ||||||| ||||| | ||||||||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
23600066 |
actaaatatcaataggaataaacaaagtcatttagtcatagtagttaagggatatagaaggtttagggacaatggacatctacatcatattttcattta |
23600164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 17190824 - 17190645
Alignment:
| Q |
16 |
tcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatca |
115 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |||||||| |||||| |||||||||||| || |||||||| |||| || ||||||||| |
|
|
| T |
17190824 |
tcttctcaagtgtgccctttacatggcaatgtagatcctatttataggatgcaaaagttgtaacttacaagtatatgaagagtcatgggattaaatatca |
17190725 |
T |
|
| Q |
116 |
atatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatatt |
195 |
Q |
| |
|
||| |||| |||||||||||||| ||||||| ||||| | |||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
17190724 |
ataagaatgaataaagtcatttagtcatagtagttaagggatatagaaagtctagggaaaatggacatccacatcatatt |
17190645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 17275116 - 17275237
Alignment:
| Q |
17 |
cttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaa |
116 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
17275116 |
cttctcaagtgtgttctttacatggcaatgtaggtcctatttatatgatacaaaagttgtaacttacaattacatgaagagtcatgagactaaatatcaa |
17275215 |
T |
|
| Q |
117 |
tatgaataaataaagtcattta |
138 |
Q |
| |
|
|| |||| |||||||||||||| |
|
|
| T |
17275216 |
taagaattaataaagtcattta |
17275237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 11302348 - 11302228
Alignment:
| Q |
6 |
tatattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgaga |
105 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| |||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| | |
|
|
| T |
11302348 |
tatattattctcttcacaaatatgttttttacatggtaatgtaagtcctatttataggatacaaaagttgtaatttacaattacatgaagagctatgaaa |
11302249 |
T |
|
| Q |
106 |
gtaaatatcaatatgaataaa |
126 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
11302248 |
taaaatatcaataagaataaa |
11302228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 17270181 - 17270316
Alignment:
| Q |
17 |
cttcacaagtgtgttttttacatggcaatgtagatcctatat------ataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaa |
110 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
17270181 |
cttctcaagtgtgttctttacatggcaatgtaggtcctatatctatttataggatacaaaagttgtaacttacaattacatgaagagtcataagactaaa |
17270280 |
T |
|
| Q |
111 |
tatcaatatgaataaataaagtcatttaatcatagt |
146 |
Q |
| |
|
| |||||| |||| ||||||| ||||| ||||||| |
|
|
| T |
17270281 |
tttcaataagaattaataaagccatttggtcatagt |
17270316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 10734128 - 10733945
Alignment:
| Q |
8 |
tattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagt |
107 |
Q |
| |
|
||||||||||||||||||| | | ||| ||||| |||||||| |||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| | |
|
|
| T |
10734128 |
tattattctcttcacaagtatatcttt-acatgacaatgtaggtcctatttataggatacaaa-gttgtaacttacaattacatgaagagtcatgagatt |
10734031 |
T |
|
| Q |
108 |
aaatatcaatatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10734030 |
aaatatcaata----------aagtcatttagtcatagtagttaaagaatatagaaggtctagggacaatggacatccacatcatattttcattta |
10733945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 10739164 - 10738977
Alignment:
| Q |
8 |
tattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatatag---gatacaaaagctgtaacttacaattacatgaagagccatgag |
104 |
Q |
| |
|
||||||||||||||||||| | | ||| |||||||||||||| |||||| ||||| |||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
10739164 |
tattattctcttcacaagtatatcttt-acatggcaatgtaggtcctatttatagtaggatacaaaagttgtaacttacatttacatgaagagtcatgag |
10739066 |
T |
|
| Q |
105 |
agtaaatatcaatatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
10739065 |
actaaatatcaata----------aagtcatttagtcatagtagttaaagaatatagaaggtctagggacaatggacatccacataatattttcattta |
10738977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 17909950 - 17909755
Alignment:
| Q |
8 |
tattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagt |
107 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| | || || |||||| ||||||| ||| | | |||| |||||| ||||||||||||||| || | |
|
|
| T |
17909950 |
tattattctcttctcaagtgtgttctttacattgagatataagtcctatttataggacacacatgtggtaagttacaagtacatgaagagccataggact |
17909851 |
T |
|
| Q |
108 |
aaatatcaatatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
|| | ||| || || |||| || |||| | ||| | | |||| ||| |||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17909850 |
aagtgtcattaactatgaatataggcattcactcagaaatattaaggaaaatagaagggctagggacaatggacatccacatcatattttcattta |
17909755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 17703098 - 17702998
Alignment:
| Q |
17 |
cttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaa |
116 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||| |||||| ||||||||||||||| | |||||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
17703098 |
cttcactagtgtgtgctttacatgacaatgtatgtcctatttataggatacaaaagttttaacttacaagtaccctcagagccatgagactaaatatcaa |
17702999 |
T |
|
| Q |
117 |
t |
117 |
Q |
| |
|
| |
|
|
| T |
17702998 |
t |
17702998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 28874280 - 28874105
Alignment:
| Q |
17 |
cttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaa |
116 |
Q |
| |
|
|||||||||||||| ||| | ||| || ||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
28874280 |
cttcacaagtgtgtcttt-atatgacagtgtaggtcctatttataggatacaaaagttgtaacttacaattacatgaagaaccatgagactaaatatc-- |
28874184 |
T |
|
| Q |
117 |
tatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatattttcattta |
203 |
Q |
| |
|
|||||||||||||| ||||| | ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
28874183 |
--------aataaagtcatttagtcataatagttaagaaatatagaaggtctagggataatggacatccacatcatattttcattta |
28874105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 7117140 - 7117295
Alignment:
| Q |
40 |
ggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaatatgaataaataaagtcatttaa |
139 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||| |||| ||||||| |||||| |
|
|
| T |
7117140 |
ggcaatgttggtcctatttataggatacaaaagttgtaacttacaagtacatgaagaatcatgagactaaatatcaataagaatgaataaagacatttag |
7117239 |
T |
|
| Q |
140 |
tcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatatt |
195 |
Q |
| |
|
|||||| |||| | ||||| |||||||||||| |||| |||||||||||||||| |
|
|
| T |
7117240 |
tcatagaaattaagggatataaaaggtctagggaaaatggacatccacatcatatt |
7117295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 38419936 - 38419851
Alignment:
| Q |
33 |
tttacatggcaatgtagatcctatatataggatacaaaagctgtaacttacaattacatgaagagccatgagagtaaatatcaata |
118 |
Q |
| |
|
|||||||| ||||||| |||||| |||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
38419936 |
tttacatgacaatgtaactcctatttatacgatacaaaagttgtaacttacaattacatgaagaaccatgagactaaatatcaata |
38419851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 7868 - 7780
Alignment:
| Q |
107 |
taaatatcaatatgaataaataaagtcatttaatcatagttgttaaagaatatagaaggtctagggacaatgtacatccacatcatatt |
195 |
Q |
| |
|
||||||| |||| |||||||||||| |||||| |||||| ||||| | |||||||| ||||||||| |||| ||||| |||| ||||| |
|
|
| T |
7868 |
taaatattaataagaataaataaagccatttactcataggagttaagggatatagaaagtctagggaaaatggacatctacataatatt |
7780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 35338990 - 35339041
Alignment:
| Q |
18 |
ttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaa |
69 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
35338990 |
ttcacaagtgtattctttacatgacaatgtagatcctatttataggatacaa |
35339041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University