View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8310_low_1 (Length: 345)

Name: NF8310_low_1
Description: NF8310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8310_low_1
NF8310_low_1
[»] chr4 (13 HSPs)
chr4 (16-240)||(35222354-35222578)
chr4 (242-315)||(29318452-29318530)
chr4 (239-283)||(21629866-21629910)
chr4 (240-275)||(2501884-2501919)
chr4 (240-275)||(46096471-46096506)
chr4 (240-275)||(53827249-53827284)
chr4 (240-274)||(31557607-31557641)
chr4 (16-60)||(11213082-11213126)
chr4 (239-282)||(10118896-10118939)
chr4 (239-277)||(26392648-26392686)
chr4 (239-277)||(46122201-46122239)
chr4 (240-272)||(5414583-5414615)
chr4 (240-272)||(20040359-20040391)
[»] chr7 (7 HSPs)
chr7 (240-337)||(17034899-17034996)
chr7 (239-283)||(41202970-41203014)
chr7 (240-275)||(25416434-25416469)
chr7 (240-275)||(47230767-47230802)
chr7 (243-277)||(39067185-39067219)
chr7 (240-277)||(39060513-39060550)
chr7 (239-275)||(5434547-5434583)
[»] chr8 (5 HSPs)
chr8 (239-337)||(21560321-21560419)
chr8 (239-282)||(4141322-4141365)
chr8 (242-286)||(32211705-32211749)
chr8 (240-275)||(28846186-28846221)
chr8 (240-282)||(10189400-10189442)
[»] chr3 (8 HSPs)
chr3 (239-337)||(43264379-43264477)
chr3 (240-275)||(52352974-52353009)
chr3 (240-278)||(10138141-10138179)
chr3 (240-274)||(34212141-34212175)
chr3 (239-272)||(35873530-35873563)
chr3 (240-287)||(10176771-10176818)
chr3 (240-277)||(18744290-18744327)
chr3 (240-277)||(50513068-50513105)
[»] chr2 (10 HSPs)
chr2 (242-337)||(37900558-37900653)
chr2 (240-287)||(22985460-22985507)
chr2 (242-286)||(37781375-37781419)
chr2 (240-275)||(7570950-7570985)
chr2 (240-275)||(16665545-16665580)
chr2 (243-275)||(29458476-29458508)
chr2 (242-277)||(40648509-40648544)
chr2 (240-283)||(43567794-43567837)
chr2 (240-278)||(284476-284514)
chr2 (242-309)||(5965871-5965942)
[»] chr1 (3 HSPs)
chr1 (239-275)||(13789477-13789513)
chr1 (240-275)||(25804630-25804665)
chr1 (240-275)||(39626518-39626553)
[»] chr5 (4 HSPs)
chr5 (240-275)||(37010436-37010471)
chr5 (239-277)||(10186479-10186517)
chr5 (240-277)||(11397082-11397119)
chr5 (240-277)||(38923055-38923092)
[»] scaffold0564 (1 HSPs)
scaffold0564 (240-274)||(4122-4156)
[»] scaffold0316 (1 HSPs)
scaffold0316 (240-274)||(3173-3207)
[»] chr6 (6 HSPs)
chr6 (240-278)||(20820291-20820329)
chr6 (240-274)||(32547836-32547870)
chr6 (240-277)||(18880804-18880841)
chr6 (240-275)||(10792372-10792407)
chr6 (239-282)||(14211778-14211821)
chr6 (240-282)||(16855880-16855922)
[»] scaffold0047 (1 HSPs)
scaffold0047 (249-282)||(49523-49556)
[»] scaffold1295 (1 HSPs)
scaffold1295 (239-275)||(1147-1183)
[»] scaffold0084 (1 HSPs)
scaffold0084 (239-275)||(14793-14829)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 35222578 - 35222354
Alignment:
Q  16 aattctatttcacaattccatatcatgtcgaatatttgggttgctgtgttggaccaaaacttatgttggttgatgctattaccttcatgtatcaagtcag 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||||||| |||||||| ||||    
T  35222578 aattctatttcacaattccatatcatgtcaaatatttgggttgctgtgttggattaaaacttatgttggttgatgttattaccttcgtgtatcaaatcag 35222479  T
Q  116 aacttgtggcatcattggcatgttgcgcatctgctaaactgtcagcttgcatcgtgagcttctcattggttatggacgaaacaatagaaacttaagcaac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35222478 aacttgtggcatcattggcatgttgcgcatctgctaaactgtcagcttgcatcgtgagcttctcattggttatggacgaaacaatagaaacttaagcaac 35222379  T
Q  216 ttgtgagaggtagaaatattaggaa 240  Q
    |||||||||||||||||||||||||    
T  35222378 ttgtgagaggtagaaatattaggaa 35222354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 29318530 - 29318452
Alignment:
Q  242 taggtatataacccgtgcgttgcacgggtttgattagaatacata----aaata-tgtttataaatgagaaaaataata 315  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    ||||| | |||| |||||||||||||||||    
T  29318530 taggtatataatccgtgcgttgtacgggtttgattagaatacatacttaaaataatttttacaaatgagaaaaataata 29318452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 21629866 - 21629910
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgattagaatac 283  Q
    |||||||||||||||||||||||||||| |||||||||| |||||    
T  21629866 aactaggtatataacccgtgcgttgcacaggtttgattaaaatac 21629910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 2501884 - 2501919
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  2501884 actaggtatataacccgtgcgttgcacgggtttgat 2501919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 46096506 - 46096471
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  46096506 actaggtatataacccgtgcgttgcacgggtttgat 46096471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 53827249 - 53827284
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  53827249 actaggtatataacccgtgcgttgcacgggtttgat 53827284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 31557641 - 31557607
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttga 274  Q
    |||||||||||||||||||||||||||||||||||    
T  31557641 actaggtatataacccgtgcgttgcacgggtttga 31557607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 11213126 - 11213082
Alignment:
Q  16 aattctatttcacaattccatatcatgtcgaatatttgggttgct 60  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||    
T  11213126 aattctattccacaattccatatcacgttgaatatttgggttgct 11213082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 10118939 - 10118896
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgattagaata 282  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||    
T  10118939 aactaggtatataacccgtgcgttgcacgagcttgattaaaata 10118896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 26392686 - 26392648
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  26392686 aactagggatacaacccgtgcgttgcacgggtttgatta 26392648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 46122201 - 46122239
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  46122201 aactagggatacaacccgtgcgttgcacgggtttgatta 46122239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 5414583 - 5414615
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggttt 272  Q
    ||||||||| |||||||||||||||||||||||    
T  5414583 actaggtatctaacccgtgcgttgcacgggttt 5414615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 20040391 - 20040359
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggttt 272  Q
    |||||||||||||||||||||||||||| ||||    
T  20040391 actaggtatataacccgtgcgttgcacgagttt 20040359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 17034996 - 17034899
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattagaatacataaaatatgtttataaatgagaaaaataatagttttggttaattagtataatc 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17034996 actaggtatataacccgtgcgttgcacgggtttgattagaatacataaaatatgtttataaatgagaaaaataatagttttggttaattagtataatc 17034899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 41202970 - 41203014
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgattagaatac 283  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  41202970 aactaggtatataacccgtgcgttgcacggatttgattataatac 41203014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 25416434 - 25416469
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  25416434 actaggtatataacccgtgcgttgcacgggtttgat 25416469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 47230767 - 47230802
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  47230767 actaggtatataacccgtgcgttgcacgggtttgat 47230802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 39067185 - 39067219
Alignment:
Q  243 aggtatataacccgtgcgttgcacgggtttgatta 277  Q
    |||||||||||||||||||||||||||||||||||    
T  39067185 aggtatataacccgtgcgttgcacgggtttgatta 39067219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 39060513 - 39060550
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    |||||||||||||||||||||||||||||| |||||||    
T  39060513 actaggtatataacccgtgcgttgcacgggcttgatta 39060550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 5434583 - 5434547
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgat 275  Q
    |||||||||||||||||||||||||||| ||||||||    
T  5434583 aactaggtatataacccgtgcgttgcactggtttgat 5434547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 239 - 337
Target Start/End: Original strand, 21560321 - 21560419
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgattagaatacataaaatatgtttataaatgagaaaaataatagttttggttaattagtataatc 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21560321 aactaggtatataacccgtgcgttgcacgggtttgattagaatacataaaatatgtttataaatgagaaaaataataattttggttaattagtataatc 21560419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 4141365 - 4141322
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgattagaata 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  4141365 aactaggtatataacccgtgcgttgcacgggtttgattaaaata 4141322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 32211749 - 32211705
Alignment:
Q  242 taggtatataacccgtgcgttgcacgggtttgattagaatacata 286  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  32211749 taggtatataacccgtgcgttgcacgggtttgattataatccata 32211705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 28846221 - 28846186
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  28846221 actaggtatataacccgtgcgttgcacgggtttgat 28846186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 10189442 - 10189400
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattagaata 282  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  10189442 actaggtatataacccgtgcgttgcacgagtttgattaaaata 10189400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 239 - 337
Target Start/End: Original strand, 43264379 - 43264477
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgattagaatacataaaatatgtttataaatgagaaaaataatagttttggttaattagtataatc 337  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43264379 aactaggtatataacccgtgggttgcacgggtttgattagaatacataaaatatgtttataaatgagaaaaataatagttttggttaattagtataatc 43264477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 52353009 - 52352974
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  52353009 actaggtatataacccgtgcgttgcacgggtttgat 52352974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 10138141 - 10138179
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattag 278  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  10138141 actaggtatataacccgtgcgttgcacgggttttattag 10138179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 34212175 - 34212141
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttga 274  Q
    |||||||||||||||||||||||||||||||||||    
T  34212175 actaggtatataacccgtgcgttgcacgggtttga 34212141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 35873563 - 35873530
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggttt 272  Q
    ||||||||||||||||||||||||||||||||||    
T  35873563 aactaggtatataacccgtgcgttgcacgggttt 35873530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 10176771 - 10176818
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattagaatacataa 287  Q
    ||||||| |||||||||||||||||||||||||  |||||||| ||||    
T  10176771 actaggtttataacccgtgcgttgcacgggtttatttagaatatataa 10176818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 18744327 - 18744290
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  18744327 actaggtatataaaccgttcgttgcacgggtttgatta 18744290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 50513068 - 50513105
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    |||||||||||||||||||||||||||  |||||||||    
T  50513068 actaggtatataacccgtgcgttgcacaagtttgatta 50513105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 37900558 - 37900653
Alignment:
Q  242 taggtatataacccgtgcgttgcacgggtttgattagaatacataaaatatgtttataaatgagaaaaataatagttttggttaattagtataatc 337  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37900558 taggtatatattccgtgcgttgcacggatttgattagaatacataaaatatgtttataaatgagaaaattaatagttttggttaattagtataatc 37900653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 22985460 - 22985507
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattagaatacataa 287  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  22985460 actaggtatataacccgtgcgttgcacgggtttgattagaatccataa 22985507  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 37781419 - 37781375
Alignment:
Q  242 taggtatataacccgtgcgttgcacgggtttgattagaatacata 286  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  37781419 taggtatataacccgtgcgttgcacgggtttgattagaattcata 37781375  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 7570950 - 7570985
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  7570950 actaggtatataacccgtgcgttgcacgggtttgat 7570985  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 16665545 - 16665580
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  16665545 actaggtatataacccgtgcgttgcacgggtttgat 16665580  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 29458508 - 29458476
Alignment:
Q  243 aggtatataacccgtgcgttgcacgggtttgat 275  Q
    |||||||||||||||||||||||||||||||||    
T  29458508 aggtatataacccgtgcgttgcacgggtttgat 29458476  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 40648509 - 40648544
Alignment:
Q  242 taggtatataacccgtgcgttgcacgggtttgatta 277  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40648509 taggtatataacccgtgcgttgcacggatttgatta 40648544  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 43567837 - 43567794
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattagaatac 283  Q
    |||| |||||||||| |||||||||||||||||||||| |||||    
T  43567837 actaagtatataaccagtgcgttgcacgggtttgattaaaatac 43567794  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 284514 - 284476
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattag 278  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  284514 actaggtatataacccttgcgttgcacgggttttattag 284476  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 5965871 - 5965942
Alignment:
Q  242 taggtatataacccgtgcgttgcacgggtttgattagaataca----taaaatatgtttataaatgagaaaa 309  Q
    |||||||||||| |||||||||| || ||||||||| ||||||    |||||||| |||| |||||||||||    
T  5965871 taggtatataacacgtgcgttgctcgagtttgattataatacatacttaaaatatttttacaaatgagaaaa 5965942  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 13789513 - 13789477
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgat 275  Q
    |||||||||||||||||||||||||||||||||||||    
T  13789513 aactaggtatataacccgtgcgttgcacgggtttgat 13789477  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 25804630 - 25804665
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  25804630 actaggtatataacccgtgcgttgcacgggtttgat 25804665  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 39626553 - 39626518
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    |||||||||||||||||||||||||||||| |||||    
T  39626553 actaggtatataacccgtgcgttgcacgggattgat 39626518  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 37010471 - 37010436
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  37010471 actaggtatataacccgtgcgttgcacgggtttgat 37010436  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 10186517 - 10186479
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  10186517 aactaggtatataacccgtgcgttgcacgggcttgatta 10186479  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 11397119 - 11397082
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  11397119 actagggatacaacccgtgcgttgcacgggtttgatta 11397082  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 38923055 - 38923092
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  38923055 actaggtatataacccgtgtgttgcacggatttgatta 38923092  T

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Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 4156 - 4122
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttga 274  Q
    |||||||||||||||||||||||||||||||||||    
T  4156 actaggtatataacccgtgcgttgcacgggtttga 4122  T

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Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 3173 - 3207
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttga 274  Q
    |||||||||||||||||||||||||||||||||||    
T  3173 actaggtatataacccgtgcgttgcacgggtttga 3207  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 20820329 - 20820291
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattag 278  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  20820329 actaggtatataacccgtgcgttgcacgggttttattag 20820291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 32547870 - 32547836
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttga 274  Q
    |||||||||||||||||||||||||||||||||||    
T  32547870 actaggtatataacccgtgcgttgcacgggtttga 32547836  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 18880841 - 18880804
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgatta 277  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18880841 actaggtatataacccgtgcgttgcacgggcttgatta 18880804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 10792407 - 10792372
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgat 275  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10792407 actaggtatataacccgtgcgttgcaccggtttgat 10792372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 14211778 - 14211821
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgattagaata 282  Q
    ||||| ||||||||||||||||||||||| ||||||||| ||||    
T  14211778 aactatgtatataacccgtgcgttgcacgagtttgattaaaata 14211821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 16855922 - 16855880
Alignment:
Q  240 actaggtatataacccgtgcgttgcacgggtttgattagaata 282  Q
    ||||||| |||||||||||||||||||||||||  ||||||||    
T  16855922 actaggtttataacccgtgcgttgcacgggtttatttagaata 16855880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 49556 - 49523
Alignment:
Q  249 ataacccgtgcgttgcacgggtttgattagaata 282  Q
    ||||||||||||||||||||||||||||||||||    
T  49556 ataacccgtgcgttgcacgggtttgattagaata 49523  T

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Target: scaffold1295 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1295
Description:

Target: scaffold1295; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 1147 - 1183
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgat 275  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  1147 aactaggtatataacctgtgcgttgcgcgggtttgat 1183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 14829 - 14793
Alignment:
Q  239 aactaggtatataacccgtgcgttgcacgggtttgat 275  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  14829 aactaggtatataacctgtgcgctgcacgggtttgat 14793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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