View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8310_low_11 (Length: 251)
Name: NF8310_low_11
Description: NF8310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8310_low_11 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 13413160 - 13413369
Alignment:
| Q |
42 |
aacaacatacactccctcagcaaatcatcctcccacacaaacagccccatacgcctcaccattaacctctcaacgtaaaaagtgcatctttgcaacattg |
141 |
Q |
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| T |
13413160 |
aacaacatacacttcctcagcaaatcatcctcccacacaaacagcctcatacgcctcaccattaacctctcaacctaaaaagtgcatctctgcaacattg |
13413259 |
T |
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| Q |
142 |
gttgatttattgtccgtcagctcaaaaagtctactcaaacaagcttttaaaatggatccatcaagccatcgtccttccaaaacaatgtagacatccatcc |
241 |
Q |
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| T |
13413260 |
gttgatttattgtccgtcagctcaaaaagtctactaaaacaagcttttaaaatggatccatcaagccaccgtccttccaaaacaatgtagacatccatcc |
13413359 |
T |
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| Q |
242 |
cccaccttcc |
251 |
Q |
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|||||||||| |
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| T |
13413360 |
cccaccttcc |
13413369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 13412974 - 13413150
Alignment:
| Q |
42 |
aacaacatacactccctcagcaaatcatcctcccacacaaacagccccatacgcctcaccattaacctctcaacgtaaaaagtgcatctttgcaacattg |
141 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||| | |||| ||||||||||||| |||||| |||||||||||| | |||||||||| |
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| T |
13412974 |
aacaacatacactccctcaacaaatcatcctcccacgcaaacagcctcctacgtctcaccattaacccctcaacctaaaaagtgcatatctgcaacattg |
13413073 |
T |
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| Q |
142 |
gttgatttattgtccgtcagctcaaaaagtctactcaaacaagcttttaaaatggatccatcaagccatcgtccttc |
218 |
Q |
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| T |
13413074 |
gttgatttattgtccatcagctcaaaaagtctactaaaacaagcttctaaaatggatccatcaagccaccgtccttc |
13413150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 39222962 - 39223105
Alignment:
| Q |
95 |
cctcaccattaacctctcaacgtaaaaagtgcatctttgcaacattggttgatttattgtccgtcagctcaaaaagtctactcaaacaagcttttaaaat |
194 |
Q |
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| T |
39222962 |
cctcaccgataacctcccaacctaaaaagtgtatctctgcaacggtgattaatttattgtctaccaactcaaaaagcctaattaaacaagcttctaaagt |
39223061 |
T |
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| Q |
195 |
ggatccatcaagccatc-gtccttccaaaacaatgtagacatcc |
237 |
Q |
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| T |
39223062 |
ggatctatcaagccacgagttcttccaaaacaacgtagacatcc |
39223105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 12961115 - 12961014
Alignment:
| Q |
146 |
atttattgtccgtcagctcaaaaagtctactcaaacaagcttttaaaatggatccatcaagcca-tcgtccttccaaaacaatgtagacat-ccatcccc |
243 |
Q |
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|||||||||| | || |||||||| ||||| |||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||| |||||||| |
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| T |
12961115 |
atttattgtcagacaactcaaaaaacctactaaaacaagcttataaagtggatccatcaagtcacatgtccttccaaaacaacctagacatcccatcccc |
12961016 |
T |
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| Q |
244 |
ca |
245 |
Q |
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|| |
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| T |
12961015 |
ca |
12961014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 33318228 - 33318345
Alignment:
| Q |
92 |
acgcctcaccattaacctctcaacgtaaaaagtgcatctttgcaacattggttgatttattgtccgtcagctcaaaaagtctactcaaacaagcttttaa |
191 |
Q |
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|||||||||||||||||| | ||| |||||| ||||||| ||||||| | | |||||||||| || ||||||||||||||| |||||| ||| ||| |
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| T |
33318228 |
acgcctcaccattaacctttaaacctaaaaattgcatctctgcaacaatttctaatttattgtcaaccaactcaaaaagtctactaaaacaaacttctaa |
33318327 |
T |
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| Q |
192 |
aatggatccatcaagcca |
209 |
Q |
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| T |
33318328 |
agtagatccatcaagcca |
33318345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 33317643 - 33317774
Alignment:
| Q |
94 |
gcctcaccattaacctctcaacgtaaaaagtgcatctttgcaacattggttgatttattgtccgtcagctcaaaaagtctactcaaacaagcttttaaaa |
193 |
Q |
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|||||||||||||||| |||| |||||||||||||| ||||| | | | |||||||||| || ||||||||| ||||| ||||||||||||||| |
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| T |
33317643 |
gcctcaccattaaccttccaacctaaaaagtgcatct--gcaactgttgctaatttattgtcatccaactcaaaaagcctactaaaacaagcttttaaag |
33317740 |
T |
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| Q |
194 |
tggatccatcaagcca-tcgtccttccaaaacaa |
226 |
Q |
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| T |
33317741 |
tagattcatcaagccacgggtccttccaaaacaa |
33317774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 5479097 - 5479139
Alignment:
| Q |
6 |
ttcgacaacttcaaaatggtgtccattgtcatttgcaacaaca |
48 |
Q |
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|||||| |||||||| ||| ||||||||||||||||||||||| |
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| T |
5479097 |
ttcgacgacttcaaagtggggtccattgtcatttgcaacaaca |
5479139 |
T |
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