View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8310_low_12 (Length: 242)
Name: NF8310_low_12
Description: NF8310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8310_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 5479097 - 5479307
Alignment:
| Q |
19 |
ttcgacaacttcaaaatggggtccattgtcatttgcaacaacaacaaaatcaacacattcaaactcatctctaccgtcggatctctgccggagcttctcc |
118 |
Q |
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| T |
5479097 |
ttcgacgacttcaaagtggggtccattgtcatttgcaacaacaacaaaatcaacaaattcaaacacatctctaccatcggatctctgccggagcttctcc |
5479196 |
T |
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| Q |
119 |
ctcctagagatccgtgccgccacaaacaacttcgatgaactcttcatcgtcggagttggaggattcggccatgtgtacaaaggctacattgacaatggtt |
218 |
Q |
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| T |
5479197 |
cttctagagattcgtgctgccacaaacaacttcgacgaactcttcattgtcggagttggaggattcggccatgtgtacaaaggctacattgacaatggtt |
5479296 |
T |
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| Q |
219 |
caacacaggtt |
229 |
Q |
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| T |
5479297 |
caacacaggtt |
5479307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 4712671 - 4712747
Alignment:
| Q |
134 |
gccgccacaaacaacttcgatgaactcttcatcgtcggagttggaggattcggccatgtgtacaaaggctacattga |
210 |
Q |
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| T |
4712671 |
gccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattga |
4712747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 4653028 - 4652964
Alignment:
| Q |
137 |
gccacaaacaacttcgatgaactcttcatcgtcggagttggaggattcggccatgtgtacaaagg |
201 |
Q |
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| T |
4653028 |
gccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtacaaagg |
4652964 |
T |
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