View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8310_low_2 (Length: 322)
Name: NF8310_low_2
Description: NF8310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8310_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 4698297 - 4698583
Alignment:
| Q |
18 |
tgatttgagttaggctaagaacttactagtatttgtcggtnnnnnnnctaataatttacagtaatatctacatttaacttgccaattacgaattctcaac |
117 |
Q |
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| T |
4698297 |
tgatttgagttaggctaagaacttattagcatttgtcattaaaaaaactaataatttacagtaatatctacatttaacttgccaattacgaattctcaac |
4698396 |
T |
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| Q |
118 |
taaaactcaagttaaagctagtgtgaccaaaataagttttaactcaacataaaacactcacattaatttaaacacccttcataagtaagtttgaatcnnn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4698397 |
taaaactcaagttaaagctagtgtgaccaaaataagttttaactcaacataaaacactcacattaatttaaacacccttcataagtaagtttgaatc-tt |
4698495 |
T |
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| Q |
218 |
nnnnnnnnaacaagataaataaatttgaatcttatcttaaaagttaactcaaacacttttatacatctaacaatttggggatttgaat |
305 |
Q |
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| T |
4698496 |
ttttttttaacaagataaataaatttgaatcttatcttaaaagttaactcaaacacttttatacatctaacaatttgaggatttgaat |
4698583 |
T |
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